Comamonas granuli (DSM 18411, KCTC 12199, NBRC 101663)

Name: Comamonas granuli (DSM 18411, KCTC 12199, NBRC 101663)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2935

Type strain

Strain Designation Ko03

Culture col. no. DSM 18411 KCTC 12199 NBRC 101663 Ko03

NCBI tax ID(s) 1223521 290309

Special Collections DSMZ KCTC

Links

Comamonas granuli Ko03 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from granular sludge in industrial wastewater treatment plant.

Gram-negative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 138341

KCTC 12199,NBRC 101663,DSM 18411

@ref 20215

Last LPSN update 2025-12-16 09:47:25

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Comamonas

Species Comamonas granuli

Full scientific name Comamonas granuli Kim et al. 2011

Morphology

Cell morphology

@ref	Gram stain
67771	negative
125438	negative
125439	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7544	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7544	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
67771	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99

Observation

67771

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7544	granular sludge in industrial wastewater treatment plant	Kongju	Republic of Korea	KOR	Asia
67771	From granule sludge		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB681516 (>99% sequence identity) for Comamonas granuli subclade from Microbeatlas

Aquatic Samples	3461
Soil Samples	627
Animal Samples	861
Plant Samples	311
Total Samples	5260

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7544	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM73999v1 assembly for Comamonas granuli NBRC 101663	contig	GCA_000739995	1223521.5	2600255078	1223521	68.66

Genome browser: GCA_000739995

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Comamonas granuli gene for 16S rRNA, partial sequence, strain: NBRC 101663	AB681516	1454		1223521
7544	Comamonas granuli gene for 16S rRNA, partial sequence, strain: Ko03	AB187586	1443		1223521

GC content

@ref	GC-content (mol%)	Method
7544	68.4	high performance liquid chromatography (HPLC)
67771	68.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Comamonas granuli NBRC 101663
NCBI: GCA_000739995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	motility	BacteriaNetⓘ	yes	85.10	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Comamonas granuli NBRC 101663
PATRIC: 1223521.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.99	yes
125438	anaerobic	anaerobicⓘ	no	90.67	yes
125438	spore-forming	spore-formingⓘ	no	89.75	no
125438	aerobic	aerobicⓘ	yes	70.76	yes
125438	thermophilic	thermophileⓘ	no	92.57	no
125438	flagellated	motile2+ⓘ	yes	87.28	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia, and Genomic Insights into 4-Aminobenzenesulfonate, p-Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga.	Gan HM, Lee YP, Austin CM.	Front Microbiol	10.3389/fmicb.2017.01880	2017
Phylogeny	Comamonas granuli sp. nov., isolated from granules used in a wastewater treatment plant.	Kim KH, Ten LN, Liu QM, Im WT, Lee ST	J Microbiol	10.1007/s12275-008-0019-0	2008

References

#7544	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18411
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Comamonas granuli (DSM 18411, KCTC 12199, NBRC 101663)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000739995

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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