Comamonas kerstersii (CIP 107987, DSM 16026, CCUG 15333)

Name: Comamonas kerstersii (CIP 107987, DSM 16026, CCUG 15333)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2930

Type strain

Strain Designation AFG1

Culture col. no. CIP 107987 DSM 16026 CCUG 15333 LMG 3475 AFG1

NCBI tax ID(s) 225992

Special Collections DSMZ CCUG CIP Literature strains

History <- M. Vaneechoutte; AFG1 <- Torry Research Station (including NCBI), United Kingdom (Alcaligenes sp.) <- Caselitz CIP <- 2003, CCUG, <- 1984, K. Kersters, LMG, Gent, Belgium <- J. Shewan

Links

Comamonas kerstersii AFG1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from human sample.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 2020

LMG 3475,CCUG 15333,CIP 107987,DSM 16026

@ref 20215

Last LPSN update 2026-02-09 11:18:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Comamonas

Species Comamonas kerstersii

Full scientific name Comamonas kerstersii Wauters et al. 2003

BacDive ID	Other strains from **Comamonas kerstersii** (13)	Type strain
141327	C. kerstersii CCUG 883, NCTC 1347, LMG 5936
141527	C. kerstersii CCUG 2601, LMG 5323
141574	C. kerstersii CCUG 3279, NCTC 2902, LMG 6013
141729	C. kerstersii CCUG 5531, LMG 6014
142156	C. kerstersii CCUG 11225, LMG 5324
144433	C. kerstersii CCUG 24953, LMG 9082
152635	C. kerstersii CCUG 47244
152636	C. kerstersii CCUG 47245
155173	C. kerstersii CCUG 56759
155476	C. kerstersii CCUG 57828
155717	C. kerstersii CCUG 59130
173108	C. kerstersii CIMB 04-7811, CRBIP17.51
173109	C. kerstersii CIMB 04-6170, CRBIP17.52

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Flagellum arrangement	Confidence
23079	negative	rod-shaped	lophotrichous
120408	negative	rod-shaped
125438	negative			97.5
125439	negative			99.9
125439				93.2

Colony morphology

@ref	Colony size	Incubation period	Medium used
23079	1.5-2.0 mm	1 day	blood agar

Pigmentation

@ref	Production	Name
120408		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6164	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
23079	blood agar
23079	tryptic soy agar and broth
36672	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120408	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6164	positive	growth	37	mesophilic
23079	positive	optimum	35.0-40.0
23079	positive	growth	44.0	thermophilic
23079	positive	growth	42.0	thermophilic
23079	positive	growth	35.0	mesophilic
23079	positive	growth	30.0	mesophilic
36672	positive	growth	30	mesophilic
46224	positive	growth	30-37	mesophilic
120408	positive	growth	10-41
120408	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23079	aerobe
46224	aerobe
120408	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.898
125439		99.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120408	NaCl	positive	growth	0-4 %
120408	NaCl		growth	6 %
120408	NaCl		growth	8 %
120408	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23079	16193 ChEBI	3-hydroxybenzoate	-	growth
23079	37054 ChEBI	3-hydroxybutyrate	+	growth
23079	16724 ChEBI	4-hydroxybutyrate	+	growth
23079	30089 ChEBI	acetate	+	growth
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
23079	16947 ChEBI	citrate	+/-	carbon source
120408	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
23079	27689 ChEBI	decanoate	+/-	growth
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
23079	4853 ChEBI	esculin	-	hydrolysis
120408	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
23079	30742 ChEBI	ethylene glycol	-	builds acid from
23079	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
23079	17240 ChEBI	itaconate	+	growth
23079	16977 ChEBI	L-alanine	-	growth
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
23079	17203 ChEBI	L-proline	+	growth
23079	24996 ChEBI	lactate	+	growth
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
23079	17632 ChEBI	nitrate	+	reduction
120408	17632 ChEBI	nitrate	+	reduction
120408	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
23079	16301 ChEBI	nitrite	-	reduction
120408	16301 ChEBI	nitrite	-	reduction
23079	9300 ChEBI	suberic acid	+	growth
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
23079	18186 ChEBI	tyrosine	+	hydrolysis
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
23079	31011 ChEBI	valerate	+	growth

Antibiotic resistance

@ref	Metabolite	ChEBI
120408	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
23079	colistin	37943
23079	desferrioxamine	50453

Metabolite production

@ref	Chebi-ID	Metabolite
23079	16136 ChEBI	hydrogen sulfide
23079	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE
120408	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Citrate test
23079	16947 ChEBI	citrate		+/-
68369	35581 ChEBI	indole	-		from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
120408	alcohol dehydrogenase	-	1.1.1.1
23079	alkaline phosphatase	-	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120408	amylase	-
23079	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
23079	benzoyl-D-arginine arylamidase	-	3.5.1.72
68382	beta-galactosidase	-	3.2.1.23	from API zym
120408	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120408	caseinase	-	3.4.21.50
23079	catalase	+	1.11.1.6
120408	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23079	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
120408	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120408	gelatinase	-
68369	gelatinase	-		from API 20NE
120408	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
120408	lipase	-
68382	lipase (C 14)	-		from API zym
23079	lysine decarboxylase	-	4.1.1.18
120408	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
23079	ornithine decarboxylase	-	4.1.1.17
120408	ornithine decarboxylase	-	4.1.1.17
120408	oxidase	-
120408	protease	-
23079	pyrrolidonyl arylamidase	-	3.4.19.3
68382	trypsin	-	3.4.21.4	from API zym
120408	tryptophan deaminase	-
120408	tween esterase	+
23079	urease	-	3.5.1.5
120408	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	quinate degradation	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	ribulose monophosphate pathway	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	gallate degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	95.45	21 of 22
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	proline metabolism	81.82	9 of 11
66794	propionate fermentation	80	8 of 10
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	methylglyoxal degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	citric acid cycle	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	leucine metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	heme metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	flavin biosynthesis	66.67	10 of 15
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	lipid metabolism	64.52	20 of 31
66794	glutathione metabolism	64.29	9 of 14
66794	tyrosine metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	pyrimidine metabolism	62.22	28 of 45
66794	oxidative phosphorylation	61.54	56 of 91
66794	non-pathway related	60.53	23 of 38
66794	tryptophan metabolism	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	methionine metabolism	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	allantoin degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	pentose phosphate pathway	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	vitamin E metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	phenol degradation	50	10 of 20
66794	sulfate reduction	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	nitrate assimilation	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	propanol degradation	42.86	3 of 7
66794	factor 420 biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	vitamin B12 metabolism	35.29	12 of 34
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	Entner Doudoroff pathway	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	degradation of pentoses	28.57	8 of 28
66794	arachidonic acid metabolism	27.78	5 of 18
66794	degradation of hexoses	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	carotenoid biosynthesis	27.27	6 of 22
66794	degradation of sugar alcohols	25	4 of 16
66794	carnitine metabolism	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Fatty acid profile

Metadata FA analysis

@ref

46224

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	29.9	17.824
C16:1 ω7c	27.4	15.819
C16:0	25	16
C10:0 3OH	5.3	11.423
C14:0	3.5	14
C12:0	3.2	12
C17:0 CYCLO	2.1	16.888
C15:0	2	15
C17:0	0.9	17
C18:0	0.3	18
C13:0	0.3	13
C18:2 ω6,9c/C18:0 ANTE	0.2	17.724

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120408	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6164	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120408	not determinedn.d.	+	+	-	+	-	-	-	+	-	+	+	-	-	-	-	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	+	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	+	-	-	-	-	-	+	+	+	+	+	-	-	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

@ref	Sample type
6164	human sample
46224	Human material
120408	Human, Material

Taxonmaps

69479

Global distribution of 16S sequence AJ430347 (>99% sequence identity) for Comamonas from Microbeatlas

Aquatic Samples	471
Soil Samples	72
Animal Samples	363
Plant Samples	27
Total Samples	933

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6164	2	Risk group (German classification) According to TRBA 466
120408	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM880193v1 assembly for Comamonas kerstersii CCUG 15333	contig	GCA_008801935	225992.15	8115753106	225992	69.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Comamonas kerstersii strain CIP 107987 16S ribosomal RNA gene, partial sequence	EU024144	1316		225992
23079	Comamonas kersterii partial 16S rRNA gene, type strain LMG 3475T	AJ430347	1345		225992

GC content

23079

GC-content (mol%)61.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Comamonas kerstersii CCUG 15333
NCBI: GCA_008801935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	93.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	87.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Comamonas kerstersii strain CCUG 15333
PATRIC: 225992.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	94.81	yes
125438	spore-forming	spore-formingⓘ	no	90.90	no
125438	aerobic	aerobicⓘ	yes	81.73	yes
125438	thermophilic	thermophileⓘ	no	95.18	no
125438	flagellated	motile2+ⓘ	yes	85.11	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Intra-abdominal infections due to Comamonas kerstersii.	Almuzara MN, Cittadini R, Vera Ocampo C, Bakai R, Traglia G, Ramirez MS, del Castillo M, Vay CA.	J Clin Microbiol	10.1128/jcm.00659-13	2013
Phylogeny	Comamonas halotolerans sp. nov., isolated from the faecal sample of a zoo animal, Naemorhedus caudatus.	Park Y, Kim B, Min J, Park W.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006665	2025
Phylogeny	Comamonas jiangduensis sp. nov., a biosurfactant-producing bacterium isolated from agricultural soil.	Sun LN, Zhang J, Chen Q, He J, Li QF, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.045716-0	2012

References

#6164	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16026
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23079	Georges Wauters,Thierry De Baere,Anne Willems,Enevold Falsen,Mario Vaneechoutte: Description of Comamonas aquatica comb. nov. and Comamonas kerstersii sp. nov. for two subgroups of Comamonas terrigena and emended description of Comamonas terrigena. IJSEM 53: 859 - 862 2003 ( DOI 10.1099/ijs.0.02450-0 , PubMed 12807213 )
#36672	; Curators of the CIP;
#46224	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15333
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120408	Collection of Institut Pasteur ; Curators of the CIP; CIP 107987
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Comamonas kerstersii (CIP 107987, DSM 16026, CCUG 15333)

Name and taxonomic classification

Morphology

Cell morphology

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Physiology and metabolism

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