Name: Comamonas terrigena DSM 7099
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2927

Type strain:

Species: Comamonas terrigena

Culture col. no.: DSM 7099, ATCC 8461, CCUG 15327, CIP 63.44, LMG 5929, NCIB 8193, NCTC 1937, NRRL B-1055, JCM 6230, BCRC 10911, CCM 2409, CCUG 2185, IAM 12052, IAM 12421, IFO 12685, IFO 13299, IMET 10768, LMG 1253, NBRC 12685, NBRC 13299, NCIMB 8193, NRRL B-781

Strain history: CIP <- 1963, NCTC, Vibrio percolans <- 1925, S. Mudd, Harvard, UK

NCBI tax ID(s): 1219032 (strain), 32013 (species)

SI-ID 2018

LMG 1253, ATCC 8461, CCM 1631, CCM 2409, CCUG 15327, CCUG 2185, IAM 12052, IFO 13299, IMET 10768, LMG 5929, NCIB 8193, NCTC 1937, NRRL B-1055, NRRL B-781, DSM 7099, JCM 6230, CCRC 10911, IAM 12421, NCIMB 8193, IFO 12685, CIP 63.44, LMD 89.134, KCTC 2989, NBRC 12685, NBRC 13299, NCCB 89134, BCRC 10911, ICMP 13634, NRRL B-788, CNCTC 6264, VTT E-981067

Special Collections

Other strains from Comamonas terrigena

Section

When using BacDive for research please cite our paper

Comamonas terrigena DSM 7099 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hay-infusion filtrate.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Comamonas*
	Species	**Comamonas terrigena**
	Full Scientific Name (LPSN)	Comamonas terrigena (ex Hugh 1962) De Vos et al. 1985

	Synonym	"Comamonas* terrigena"*
	Synonym	"Comamonas* percolans"*

Information on morphological and physiological properties Morphology

[Ref.: #23079]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %95.944
[Ref.: #125439]	Gram stain	negative Confidence in %99.4

[Ref.: #23079]	Cell shape	rod-shaped

[Ref.: #23079]	Motility	yes

[Ref.: #23079]	Flagellum arrangement	lophotrichous

[Ref.: #23079]	Colony size	1.0 mm
[Ref.: #23079]	Incubation period	1 day
[Ref.: #23079]	Cultivation medium used	blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2985]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2985]

Culture medium growth

[Ref.: #2985]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2985]

Culture medium composition

expand / minimize

[Ref.: #23079]

Culture medium

blood agar

[Ref.: #23079]

Culture medium growth

[Ref.: #23079]

Culture medium

tryptic soy agar and broth

[Ref.: #23079]

Culture medium growth

[Ref.: #37574]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37574]

Culture medium growth

[Ref.: #37574]

Culture medium composition

expand / minimize

[Ref.: #123475]

Culture medium

CIP Medium 3

[Ref.: #123475]

Culture medium growth

[Ref.: #123475]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2985]		growth	30 °C
[Ref.: #23079]		growth	30.0 °C
[Ref.: #23079]		growth	35.0 °C
[Ref.: #23079]	no	growth	40.0 °C
[Ref.: #23079]	no	growth	42.0 °C
[Ref.: #23079]	no	growth	44.0 °C
[Ref.: #37574]		growth	30 °C
[Ref.: #67770]		growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23079]

Oxygen tolerance

aerobe

[Ref.: #125439]

Ability of spore formation

no Confidence in %97.9

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23079]	3-hydroxybenzoate ChEBI	-	growth
[Ref.: #23079]	3-hydroxybutyrate ChEBI	+	growth
[Ref.: #23079]	4-hydroxybenzoate ChEBI	-	growth
[Ref.: #23079]	acetate ChEBI	+	growth
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #23079]	ammonium ChEBI	+	nitrogen source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23079]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23079]	decanoate ChEBI	+/-	growth
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23079]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23079]	ethylene glycol ChEBI	-	builds acid from
[Ref.: #23079]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #23079]	itaconate ChEBI	+/-	growth
[Ref.: #23079]	L-alanine ChEBI	+	growth
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23079]	L-proline ChEBI	+	growth
[Ref.: #23079]	lactate ChEBI	+	growth
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #23079]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #23079]	nitrite ChEBI	-	reduction
[Ref.: #23079]	propionate ChEBI	+	growth
[Ref.: #23079]	suberic acid ChEBI	+	growth
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #23079]	tyrosine ChEBI	+	hydrolysis
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23079]	valerate ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity
[Ref.: #23079]		colistin ChEBI	yes
[Ref.: #23079]		desferrioxamine ChEBI	yes

	Metabolite	Production
[Ref.: #23079]	hydrogen sulfide ChEBI	no
[Ref.: #23079]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test	Citrate test
[Ref.: #23079]		citrate ChEBI		+
[Ref.: #68369]		indole ChEBI	-		* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #23079]	alkaline phosphatase	-	3.1.3.1
[Ref.: #23079]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #23079]	benzoyl-D-arginine arylamidase	-	3.5.1.72
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #23079]	catalase	+	1.11.1.6
[Ref.: #23079]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #23079]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23079]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #23079]	pyrrolidonyl arylamidase	+	3.4.19.3
[Ref.: #23079]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2985]	26038	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	vitamin B12 metabolism	79.41	27 of 34
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	tryptophan metabolism	76.32	29 of 38
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	lysine metabolism	73.81	31 of 42
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	pyrimidine metabolism	62.22	28 of 45
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	degradation of sugar alcohols	50	8 of 16
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	23.53	4 of 17
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2985]	Sample type/isolated from	hay-infusion filtrate

[Ref.: #123475]	Sample type/isolated from	Environment, Hay-infusion filtrate
[Ref.: #123475]	Country	United Kingdom
[Ref.: #123475]	Country ISO 3 Code	GBR
[Ref.: #123475]	Continent	Europe
[Ref.: #123475]	Isolation date	1921
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ430342 (>99% sequence identity) for Comamonas terrigena subclade from Microbeatlas

Aquatic Samples	451
Soil Samples	34
Animal Samples	190
Plant Samples	22
Total Samples	697

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2985]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123475]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23079]	Comamonas terrigena partial 16S rRNA gene, type strain LMG 1253T	AJ430342	1377	GenBank ENA	32013 tax ID
[Ref.: #124043]	Comamonas terrigena NBRC 12685 gene for 16S rRNA, partial sequence.	LC752389	586	GenBank ENA	32013 tax ID	*
[Ref.: #20218]	Comamonas terrigena 16S rRNA gene, strain DSM 7099	AJ420326	1498	GenBank ENA	32013 tax ID	*
[Ref.: #20218]	Comamonas terrigena gene for 16S rRNA, strain: IAM 12052	AB021418	1520	GenBank ENA	32013 tax ID	*
[Ref.: #20218]	Comamonas terrigena gene for 16S rRNA, partial sequence, strain: NBRC 12685	AB680315	1456	GenBank ENA	32013 tax ID	*
[Ref.: #20218]	Comamonas terrigena gene for 16S rRNA, partial sequence, strain: NBRC 13299	AB680400	1456	GenBank ENA	32013 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Comamonas terrigena NBRC 13299	GCA_006740045	complete	GenBank ENA	1219032 tax ID
[Ref.: #67770]	Comamonas terrigena NCTC1937	GCA_900461435	contig	GenBank ENA	32013 tax ID
[Ref.: #66792]	Comamonas terrigena NBRC 13299	1219032.4	wgs	PATRIC	1219032 tax ID	*
[Ref.: #66792]	Comamonas terrigena strain NCTC1937	32013.6	wgs	PATRIC	32013 tax ID	*
[Ref.: #66792]	Comamonas terrigena NBRC 13299	2731957557	draft	JGI IMG/M	1219032 tax ID	*
[Ref.: #66792]	Comamonas terrigena NCTC 1937	2808606720	draft	JGI IMG/M	32013 tax ID	*

[Ref.: #23079]	GC-content	64.0 mol%
[Ref.: #67770]	GC-content	64 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	65.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Comamonas terrigena NBRC 13299 PATRIC: 1219032.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	95.944	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.236	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.559	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	84.118	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	75.456	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Comamonas terrigena NCTC1937 NCBI: GCA_900461435
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	84.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	88.9
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.9

Availability in culture collections External links

[Ref.: #2985]

Culture collection no.

DSM 7099, ATCC 8461, CCUG 15327, CIP 63.44, LMG 5929, NCIB 8193, NCTC 1937, NRRL B-1055, JCM 6230, BCRC 10911, CCM 2409, CCUG 2185, IAM 12052, IAM 12421, IFO 12685, IFO 13299, IMET 10768, LMG 1253, NBRC 12685, NBRC 13299, NCIMB 8193, NRRL B-781

[Ref.: #72450]

SI-ID 2018

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comamonas humi sp. nov., isolated from soil.	Hatayama K	Int J Syst Evol Microbiol	10.1099/ijs.0.067439-0	2014	*
Phylogeny	Comamonas jiangduensis sp. nov., a biosurfactant-producing bacterium isolated from agricultural soil.	Sun LN, Zhang J, Chen Q, He J, Li QF, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.045716-0	2012	*
Phylogeny	Comamonas composti sp. nov., isolated from food waste compost.	Young CC, Chou JH, Arun AB, Yen WS, Sheu SY, Shen FT, Lai WA, Rekha PD, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65277-0	2008	*
Phylogeny	Comamonas odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus.	Chou JH, Sheu SY, Lin KY, Chen WM, Arun AB, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.64551-0	2007	*
Enzymology	Production of catalases by Comamonas spp. and resistance to oxidative stress.	Godocikova J, Bohacova V, Zamocky M, Polek B	Folia Microbiol (Praha)	10.1007/BF02931458	2005	*

References

#2985

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7099

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23079

Georges Wauters,Thierry De Baere,Anne Willems,Enevold Falsen,Mario Vaneechoutte: Description of Comamonas aquatica comb. nov. and Comamonas kerstersii sp. nov. for two subgroups of Comamonas terrigena and emended description of Comamonas terrigena. IJSEM 53: 859 - 862 2003 ( DOI 10.1099/ijs.0.02450-0 , PubMed 12807213 )

#37574 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72450

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2018.1 )

#123475 Collection of Institut Pasteur ; Curators of the CIP; CIP 63.44

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Comamonas terrigena in external resources:
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BRENDA
PANGAEA
GBIF

Comamonas terrigena NBRC 13299

Comamonas terrigena NCTC1937

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Change proposal