Acidovorax avenae (DSM 7227, ATCC 19860, ICMP 3183)

Name: Acidovorax avenae (DSM 7227, ATCC 19860, ICMP 3183)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2891

Type strain

Culture col. no. DSM 7227 ATCC 19860 ICMP 3183 ICPB PA117 NCPPB 1011 6 more

NCBI tax ID(s) 80867

Special Collections DSMZ CCUG JCM CIP

History <- NCPPB <- ICPB <- A.J. Ullstrup IAM 13658 <-- NCPPB 1011 ("Pseudomonas alboprecipitans") <-- M. Starr PA 117 <-- A. J. Ullstrup. CIP <- 2000, CCUG <- K. Kersters, LMG, Gent, Belgium <- NCPPB <- ICPB <- A. Ullstrup

Links

Acidovorax avenae DSM 7227 is an obligate aerobe, Gram-negative, motile plant pathogen that was isolated from Zea mays.

Gram-negative motile rod-shaped obligate aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 97

LMG 2117,ATCC 19860,CCUG 15838,ICMP 3183,NCPPB 1011,PDDCC 3183,CIP 106500,DSM 7227,BCRC 12852,CCRC 12852,IAM 13658,CFBP 2425,KACC 10162,JCM 20985,CGMCC 1.1726

@ref 20215

Last LPSN update 2026-02-09 11:18:22

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Acidovorax

Species Acidovorax avenae

Full scientific name Acidovorax avenae (Manns 1909) Willems et al. 1992

Synonyms (4)

"Phytomonas rubrilineans"
Paracidovorax avenae
Pseudomonas avenae
Pseudomonas rubrilineans

BacDive ID	Other strains from **Acidovorax avenae** (13)	Type strain
134564	A. avenae B 385, CIP 106434, CCUG 15837, ATCC 19307, ...
143388	A. avenae CCUG 18836, CCM 2761, LMG 5703
143389	A. avenae CCUG 18837, CCM 2762, LMG 5704
157271	A. avenae IMI 359864
157272	A. avenae IMI 359866
157273	A. avenae IMI 360760
157274	A. avenae IMI 363620
157275	A. avenae IMI 369134
157276	A. avenae IMI 369135
157277	A. avenae IMI 369136
157278	A. avenae IMI 369137
157279	A. avenae IMI 369138
157280	A. avenae IMI 369139

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116660	negative	rod-shaped
125439	negative		94.1
125438	negative		98

Pigmentation

@ref	Production	Name
116660		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3062	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39547	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116660	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3062	positive	growth	25
39547	positive	growth	30
67770	positive	growth	25
116660	positive	growth	25-41
116660	negative	growth	5
116660	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116660	obligate aerobe
125439	obligate aerobe	92.4

Spore formation

@ref	Spore formation	Confidence
125439		96.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116660	NaCl	positive	growth	0-2 %
116660	NaCl		growth	4 %
116660	NaCl		growth	6 %
116660	NaCl		growth	8 %
116660	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
116660	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
116660	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
116660	17632 ChEBI	nitrate	+	reduction
116660	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
116660	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116660	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
116660	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116660	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116660	amylase	+
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
116660	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116660	caseinase	+	3.4.21.50
116660	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
116660	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116660	gelatinase	-
68369	gelatinase	-		from API 20NE
116660	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
116660	lipase	-
68382	lipase (C 14)	+		from API zym
116660	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116660	ornithine decarboxylase	-	4.1.1.17
116660	oxidase	+
116660	protease	+
68382	trypsin	-	3.4.21.4	from API zym
116660	tryptophan deaminase	-
116660	tween esterase	+
116660	urease	+	3.5.1.5
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116660	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
3062	+	-	-	-	+	-	-	-	+	+	-	+	-	-	+	+	+	+	-	-	+
3062	+	-	-	-	+	-	-	-	+	+	-	+	-	-	+	+	+	+	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116660	not determinedn.d.	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+	+	-	+	+	+	+	-	+	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date	Isolation date
3062	Zea mays	Zea mays	USA	USA	North America
46359	Zea mays		USA	USA	North America	1958
67770	Zea mays	Zea mays	USA	USA	North America
116660	Zea mays		United States of America	USA	North America		1958

Taxonmaps

69479

Global distribution of 16S sequence JQ743862 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	12286
Soil Samples	16355
Animal Samples	6685
Plant Samples	10427
Total Samples	45753

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
3062		1	Risk group (German classification) According to TRBA 466
116660		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM17685v2 assembly for Paracidovorax avenae ATCC 19860	complete	GCA_000176855	643561.4	650716004	643561	99

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Acidovorax avenae subsp. avenae 16S ribosomal RNA gene, partial sequence	AF078759	1513	643561
20218	Acidovorax avenae subsp. avenae strain ATCC19860 16S-23S internal transcribed spacer, complete sequence	AY080997	619	643561
20218	Acidovorax avenae subsp. avenae strain FC-320 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU368726	615	643561
20218	Acidovorax avenae subsp. avenae strain CIP 106500 16S ribosomal RNA gene, partial sequence	EU024134	1314	80870
20218	Acidovorax avenae subsp. avenae 16S ribosomal RNA gene, partial sequence	AF137505	1481	80870
20218	Acidovorax avenae strain ICMP 3183 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	GU339096	898	80867
20218	Acidovorax avenae subsp. avenae strain BC523 16S ribosomal RNA gene, partial sequence	JQ743862	1426	80870
20218	Acidovorax avenae subsp. avenae strain BC523 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	JQ743875	673	80870
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743864	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743865	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743866	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743867	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743868	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743869	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743870	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743871	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743872	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743873	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743874	1426	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743877	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743878	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743879	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743880	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743881	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743882	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743883	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743884	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743885	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743886	673	80867
124043	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743887	673	80867

GC content

3062

GC-content (mol%)69.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidovorax avenae subsp. avenae ATCC 19860
PATRIC: 643561.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.10	no
125439	motility	BacteriaNetⓘ	yes	78.60	no
125439	gram_stain	BacteriaNetⓘ	negative	94.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidovorax avenae subsp. avenae ATCC 19860 ATCC 19860
NCBI: GCA_000176855.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	97.28	yes
125438	aerobic	aerobicⓘ	yes	89.84	yes
125438	spore-forming	spore-formingⓘ	no	86.10	no
125438	thermophilic	thermophileⓘ	no	94.27	no
125438	flagellated	motile2+ⓘ	yes	83.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
Genetics	Complete genome sequence of Paracidovorax avenae causing red stripe in sugarcane.	Duan HH, Zhao JY, Liu WT, Xie Q, Zheng CY, Gao SJ.	BMC Genom Data	10.1186/s12863-024-01271-5	2024
	Genetic and morphological variants of Acidovorax avenae subsp. avenae cause red stripe of sugarcane in China.	Zhao JY, Chen J, Hu ZT, Li J, Fu HY, Rott PC, Gao SJ.	Front Plant Sci	10.3389/fpls.2023.1127928	2023
	The phytopathogen Xanthomonas campestris senses and effluxes salicylic acid via a sensor HepR and an RND family efflux pump to promote virulence in host plants.	Song K, Li R, Cui Y, Chen B, Zhou L, Han W, Jiang BL, He YW.	mLife	10.1002/mlf2.12140	2024
Genetics	Discovery of Antimicrobial Phosphonopeptide Natural Products from Bacillus velezensis by Genome Mining.	Wilson J, Cui J, Nakao T, Kwok H, Zhang Y, Kayrouz CM, Pham TM, Roodhouse H, Ju KS.	Appl Environ Microbiol	10.1128/aem.00338-23	2023
Genetics	Role of the Genes of Type VI Secretion System in Virulence of Rice Bacterial Brown Stripe Pathogen Acidovorax avenae subsp. avenae Strain RS-2.	Masum MMI, Yang Y, Li B, Olaitan OS, Chen J, Zhang Y, Fang Y, Qiu W, Wang Y, Sun G.	Int J Mol Sci	10.3390/ijms18102024	2017
Enzymology	Two types of genetic carrier, the IncP genomic island and the novel IncP-1beta plasmid, for the aac(2')-IIa gene that confers kasugamycin resistance in Acidovorax avenae ssp. avenae.	Yoshii A, Omatsu T, Katayama Y, Koyama S, Mizutani T, Moriyama H, Fukuhara T.	Mol Plant Pathol	10.1111/mpp.12182	2015
Transcriptome	Genome sequence of the rice-pathogenic bacterium Acidovorax avenae subsp. avenae RS-1.	Xie GL, Zhang GQ, Liu H, Lou MM, Tian WX, Li B, Zhou XP, Zhu B, Jin GL.	J Bacteriol	10.1128/jb.05594-11	2011
Metabolism	Differential expression of in vivo and in vitro protein profile of outer membrane of Acidovorax avenae subsp. avenae.	Ibrahim M, Shi Y, Qiu H, Li B, Jabeen A, Li L, Liu H, Kube M, Xie G, Wang Y, Blondel C, Santiviago CA, Contreras I, Sun G.	PLoS One	10.1371/journal.pone.0049657	2012
Proteome	Regulatory role of tetR gene in a novel gene cluster of Acidovorax avenae subsp. avenae RS-1 under oxidative stress.	Liu H, Yang CL, Ge MY, Ibrahim M, Li B, Zhao WJ, Chen GY, Zhu B, Xie GL.	Front Microbiol	10.3389/fmicb.2014.00547	2014
Pathogenicity	New insights into virulence mechanisms of rice pathogen Acidovorax avenae subsp. avenae strain RS-1 following exposure to ß-lactam antibiotics.	Li B, Ge M, Zhang Y, Wang L, Ibrahim M, Wang Y, Sun G, Chen G.	Sci Rep	10.1038/srep22241	2016
Metabolism	Transcriptome analysis of Acidovorax avenae subsp. avenae cultivated in vivo and co-culture with Burkholderia seminalis.	Li B, Ibrahim M, Ge M, Cui Z, Sun G, Xu F, Kube M.	Sci Rep	10.1038/srep05698	2014
Enzymology	Implanted-port-catheter-related sepsis caused by Acidovorax avenae and methicillin-sensitive Staphylococcus aureus.	Malkan AD, Strollo W, Scholand SJ, Dudrick SJ.	J Clin Microbiol	10.1128/jcm.01093-09	2009
Metabolism	Nanopods: a new bacterial structure and mechanism for deployment of outer membrane vesicles.	Shetty A, Chen S, Tocheva EI, Jensen GJ, Hickey WJ.	PLoS One	10.1371/journal.pone.0020725	2011
Genetics	A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria.	Raymann K, Bobay LM, Doak TG, Lynch M, Gribaldo S.	G3 (Bethesda)	10.1534/g3.112.005231	2013
Metabolism	Novel non-phosphorylative pathway of pentose metabolism from bacteria.	Watanabe S, Fukumori F, Nishiwaki H, Sakurai Y, Tajima K, Watanabe Y.	Sci Rep	10.1038/s41598-018-36774-6	2019
Genetics	Mining of Microbial Genomes for the Novel Sources of Nitrilases.	Sharma N, Thakur N, Raj T, Savitri, Bhalla TC.	Biomed Res Int	10.1155/2017/7039245	2017
Metabolism	D-alanine modification of a protease-susceptible outer membrane component by the Bordetella pertussis dra locus promotes resistance to antimicrobial peptides and polymorphonuclear leukocyte-mediated killing.	Taneja NK, Ganguly T, Bakaletz LO, Nelson KJ, Dubey P, Poole LB, Deora R.	J Bacteriol	10.1128/jb.00510-13	2013
Metabolism	Type IV pilin is glycosylated in Pseudomonas syringae pv. tabaci 6605 and is required for surface motility and virulence.	Nguyen LC, Taguchi F, Tran QM, Naito K, Yamamoto M, Ohnishi-Kameyama M, Ono H, Yoshida M, Chiku K, Ishii T, Inagaki Y, Toyoda K, Shiraishi T, Ichinose Y.	Mol Plant Pathol	10.1111/j.1364-3703.2012.00789.x	2012
Metabolism	A LuxR-type regulator, AcrR, regulates flagellar assembly and contributes to virulence, motility, biofilm formation, and growth ability of Acidovorax citrulli.	Guan W, Wang T, Huang Q, Tian E, Liu B, Yang Y, Zhao T.	Mol Plant Pathol	10.1111/mpp.12910	2020
Metabolism	Heterologous expression and characterization of two 1-hydroxy-2-naphthoic acid dioxygenases from Arthrobacter phenanthrenivorans.	Vandera E, Kavakiotis K, Kallimanis A, Kyrpides NC, Drainas C, Koukkou AI.	Appl Environ Microbiol	10.1128/aem.07137-11	2012
	Redundancy and Specificity of Type VI Secretion vgrG Loci in Antibacterial Activity of Agrobacterium tumefaciens 1D1609 Strain.	Santos MNM, Cho ST, Wu CF, Chang CJ, Kuo CH, Lai EM.	Front Microbiol	10.3389/fmicb.2019.03004	2019
	Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8.	Shi Y, Chai L, Tang C, Yang Z, Zhang H, Chen R, Chen Y, Zheng Y.	Biotechnol Biofuels	10.1186/1754-6834-6-1	2013
Metabolism	Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes.	Voronina OL, Kunda MS, Ryzhova NN, Aksenova EI, Semenov AN, Romanova YM, Gintsburg AL.	Biomed Res Int	10.1155/2016/6560534	2016
	Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome.	Saha S, Hunter WB, Reese J, Morgan JK, Marutani-Hert M, Huang H, Lindeberg M.	PLoS One	10.1371/journal.pone.0050067	2012
Metabolism	Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography.	Ginige MP, Keller J, Blackall LL.	Appl Environ Microbiol	10.1128/aem.71.12.8683-8691.2005	2005
	Involvement of Type IV Pili in Pathogenicity of Plant Pathogenic Bacteria.	Burdman S, Bahar O, Parker JK, De La Fuente L.	Genes (Basel)	10.3390/genes2040706	2011
Genetics	Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging.	Zepeda Mendoza ML, Roggenbuck M, Manzano Vargas K, Hansen LH, Brunak S, Gilbert MTP, Sicheritz-Ponten T.	Acta Vet Scand	10.1186/s13028-018-0415-3	2018
Metabolism	The HopQ1 effector's nucleoside hydrolase-like domain is required for bacterial virulence in arabidopsis and tomato, but not host recognition in tobacco.	Li W, Chiang YH, Coaker G.	PLoS One	10.1371/journal.pone.0059684	2013
Metabolism	Characterization of a nitrilase and a nitrile hydratase from Pseudomonas sp. strain UW4 that converts indole-3-acetonitrile to indole-3-acetic acid.	Duca D, Rose DR, Glick BR.	Appl Environ Microbiol	10.1128/aem.00649-14	2014
Genetics	Inteins as indicators of gene flow in the halobacteria.	Soucy SM, Fullmer MS, Papke RT, Gogarten JP.	Front Microbiol	10.3389/fmicb.2014.00299	2014
Metabolism	Novel tripartite aromatic acid transporter essential for terephthalate uptake in Comamonas sp. strain E6.	Hosaka M, Kamimura N, Toribami S, Mori K, Kasai D, Fukuda M, Masai E.	Appl Environ Microbiol	10.1128/aem.01600-13	2013
Metabolism	Fha interaction with phosphothreonine of TssL activates type VI secretion in Agrobacterium tumefaciens.	Lin JS, Wu HH, Hsu PH, Ma LS, Pang YY, Tsai MD, Lai EM.	PLoS Pathog	10.1371/journal.ppat.1003991	2014
	Development of PCR and TaqMan PCR Assays to Detect Pseudomonas coronafaciens, a Causal Agent of Halo Blight of Oats.	An JH, Noh YH, Kim YE, Lee HI, Cha JS.	Plant Pathol J	10.5423/ppj.oa.09.2014.0096	2015
Metabolism	Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.	Watanabe Y, Watanabe S, Fukui Y, Nishiwaki H	Biochem Biophys Res Commun	10.1016/j.bbrc.2020.05.094	2020
Metabolism	Substrate and metabolic promiscuities of d-altronate dehydratase family proteins involved in non-phosphorylative d-arabinose, sugar acid, l-galactose and l-fucose pathways from bacteria.	Watanabe S, Fukumori F, Watanabe Y	Mol Microbiol	10.1111/mmi.14259	2019
	First Report of Corn Bacterial Leaf Stripe Caused by Acidovorax avenae in Guangdong Province, China.	Ji C, Ou J, Xu D, Pan R	Plant Dis	10.1094/PDIS-03-14-0334-PDN	2014
	First Report of Acidovorax avenae subsp. avenae Causing Sugarcane Red Stripe in Gabon.	Girard JC, Noell J, Larbre F, Roumagnac P, Rott P	Plant Dis	10.1094/PDIS-09-13-0914-PDN	2014
	First Report of Acidovorax avenae subsp. avenae Causing Bacterial Leaf Stripe of Strelitzia nicolai.	Seijo TE, Peres NA	Plant Dis	10.1094/PDIS-03-11-0160	2011
	First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327).	Ehsani E, Jauregui R, Geffers R, Jarek M, Boon N, Pieper DH, Vilchez-Vargas R.	Genome Announc	10.1128/genomea.01378-15	2015
Phylogeny	Acidovorax lacteus sp. nov., isolated from a culture of a bloom-forming cyanobacterium (Microcystis sp.).	Chun SJ, Cui Y, Ko SR, Lee HG, Srivastava A, Oh HM, Ahn CY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0892-9	2017
Phylogeny	Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae.	Vaneechoutte M, Janssens M, Avesani V, Delmee M, Deschaght P	Int J Syst Evol Microbiol	10.1099/ijs.0.046102-0	2012

References

#3062	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7227
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39547	; Curators of the CIP;
#46359	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15838
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116660	Collection of Institut Pasteur ; Curators of the CIP; CIP 106500
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Acidovorax avenae (DSM 7227, ATCC 19860, ICMP 3183)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000176855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media