Name: Acidovorax avenae DSM 7227
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2891

Type strain:

Species: Acidovorax avenae

Culture col. no.: DSM 7227, ATCC 19860, ICMP 3183, ICPB PA117, NCPPB 1011, CCUG 15838, LMG 2117, CIP 106500, JCM 20985, CFBP 2425, IAM 13658

Strain history: CIP <- 2000, CCUG <- K. Kersters, LMG, Gent, Belgium <- NCPPB <- ICPB <- A. Ullstrup

NCBI tax ID(s): 80867 (species)

SI-ID 97

LMG 2117, ATCC 19860, CCUG 15838, ICMP 3183, NCPPB 1011, PDDCC 3183, CIP 106500, DSM 7227, BCRC 12852, CCRC 12852, IAM 13658, CFBP 2425, KACC 10162, JCM 20985, CGMCC 1.1726

Special Collections

Other strains from Acidovorax avenae

Section

Acidovorax avenae DSM 7227 is an obligate aerobe, Gram-negative plant pathogen that was isolated from Zea mays.

Gram-negative
obligate aerobe
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Species	**Acidovorax avenae**
	Full Scientific Name (LPSN)	Acidovorax avenae (Manns 1909) Willems et al. 1992

	Synonym	"Phytomonas* rubrilineans"*
	Synonym	Paracidovorax avenae
	Synonym	Pseudomonas avenae
	Synonym	Pseudomonas rubrilineans

Information on morphological and physiological properties Morphology

[Ref.: #116660]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98

[Ref.: #116660]	Cell shape	rod-shaped

[Ref.: #116660]	Motility	yes

[Ref.: #116660]	Pigment production	no
[Ref.: #116660]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3062]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #3062]

Culture medium growth

[Ref.: #3062]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3062]

Culture medium composition

expand / minimize

[Ref.: #39547]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39547]

Culture medium growth

[Ref.: #39547]

Culture medium composition

expand / minimize

[Ref.: #116660]

Culture medium

CIP Medium 3

[Ref.: #116660]

Culture medium growth

[Ref.: #116660]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3062]		growth	25 °C
[Ref.: #39547]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #116660]		growth	25-41 °C
[Ref.: #116660]	no	growth	5 °C
[Ref.: #116660]	no	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116660]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %97

	Salt	Tested relation		Salt conc.
[Ref.: #116660]	NaCl		growth	0-2	%
[Ref.: #116660]	NaCl	no	growth	4	%
[Ref.: #116660]	NaCl	no	growth	6	%
[Ref.: #116660]	NaCl	no	growth	8	%
[Ref.: #116660]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #116660]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #116660]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #116660]	nitrate ChEBI	+	reduction
[Ref.: #116660]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #116660]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116660]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #116660]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116660]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116660]	amylase	+
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #116660]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116660]	caseinase	+	3.4.21.50
[Ref.: #116660]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #116660]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116660]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #116660]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116660]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #116660]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116660]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116660]	oxidase	+
[Ref.: #116660]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116660]	tryptophan deaminase	-
[Ref.: #116660]	tween esterase	+
[Ref.: #116660]	urease	+	3.5.1.5
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #3062]	23359	+	-	-	-	+	-	-	-	+	+	-	+	-	-	+	+	+	+	-	-	+
[Ref.: #3062]	23335	+	-	-	-	+	-	-	-	+	+	-	+	-	-	+	+	+	+	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116660]	1722	not determinedn.d.	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+	+	-	+	+	+	+	-	+	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116660]	9559	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3062]	Sample type/isolated from	Zea mays
[Ref.: #3062]	Host species	Zea mays
[Ref.: #3062]	Country	USA
[Ref.: #3062]	Country ISO 3 Code	USA
[Ref.: #3062]	Continent	North America

[Ref.: #46359]	Sample type/isolated from	Zea mays
[Ref.: #46359]	Sampling date	1958
[Ref.: #46359]	Country	USA
[Ref.: #46359]	Country ISO 3 Code	USA
[Ref.: #46359]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Zea mays
[Ref.: #67770]	Host species	Zea mays
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #116660]	Sample type/isolated from	Zea mays
[Ref.: #116660]	Country	United States of America
[Ref.: #116660]	Country ISO 3 Code	USA
[Ref.: #116660]	Continent	North America
[Ref.: #116660]	Isolation date	1958
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ743862 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	12286
Soil Samples	16355
Animal Samples	6685
Plant Samples	10427
Total Samples	45753

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3062]	Pathogenicity (plant)	yes
[Ref.: #3062]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116660]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Acidovorax avenae subsp. avenae strain CIP 106500 16S ribosomal RNA gene, partial sequence	EU024134	1314	GenBank ENA	80870 tax ID	*
[Ref.: #20218]	Acidovorax avenae subsp. avenae 16S ribosomal RNA gene, partial sequence	AF137505	1481	GenBank ENA	80870 tax ID	*
[Ref.: #20218]	Acidovorax avenae strain ICMP 3183 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	GU339096	898	GenBank ENA	80867 tax ID	*
[Ref.: #20218]	Acidovorax avenae subsp. avenae strain BC523 16S ribosomal RNA gene, partial sequence	JQ743862	1426	GenBank ENA	80870 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743864	1426	GenBank ENA	80867 tax ID	*
[Ref.: #20218]	Acidovorax avenae subsp. avenae strain BC523 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	JQ743875	673	GenBank ENA	80870 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743865	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743866	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743867	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743868	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743869	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743870	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743871	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743872	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743873	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence.	JQ743874	1426	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743877	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743878	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743879	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743880	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743881	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743882	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743883	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743884	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743885	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743886	673	GenBank ENA	80867 tax ID	*
[Ref.: #124043]	Acidovorax avenae subsp. avenae strain BC3223 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	JQ743887	673	GenBank ENA	80867 tax ID	*
[Ref.: #20218]	Acidovorax avenae subsp. avenae 16S ribosomal RNA gene, partial sequence	AF078759	1513	GenBank ENA	643561 tax ID	*
[Ref.: #20218]	Acidovorax avenae subsp. avenae strain ATCC19860 16S-23S internal transcribed spacer, complete sequence	AY080997	619	GenBank ENA	643561 tax ID	*
[Ref.: #20218]	Acidovorax avenae subsp. avenae strain FC-320 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU368726	615	GenBank ENA	643561 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracidovorax avenae ATCC 19860	GCA_000176855	complete	GenBank ENA	643561 tax ID	*
[Ref.: #66792]	Acidovorax avenae subsp. avenae ATCC 19860	643561.4	complete	PATRIC	643561 tax ID	*
[Ref.: #66792]	Acidovorax avenae avenae ATCC 19860	650716004	complete	JGI IMG/M	643561 tax ID	*

[Ref.: #3062]

GC-content

69.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidovorax avenae subsp. avenae ATCC 19860 ATCC 19860 NCBI: GCA_000176855.2
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidovorax avenae subsp. avenae ATCC 19860 ATCC 19860 NCBI: GCA_000176855.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.275	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.843	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.1	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.273	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	83.603	no

Availability in culture collections External links

[Ref.: #3062]

Culture collection no.

DSM 7227, ATCC 19860, ICMP 3183, ICPB PA117, NCPPB 1011, CCUG 15838, LMG 2117, CIP 106500, JCM 20985, CFBP 2425, IAM 13658

[Ref.: #72414]

SI-ID 97

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.	Watanabe Y, Watanabe S, Fukui Y, Nishiwaki H	Biochem Biophys Res Commun	10.1016/j.bbrc.2020.05.094	2020	*
Metabolism	Substrate and metabolic promiscuities of d-altronate dehydratase family proteins involved in non-phosphorylative d-arabinose, sugar acid, l-galactose and l-fucose pathways from bacteria.	Watanabe S, Fukumori F, Watanabe Y	Mol Microbiol	10.1111/mmi.14259	2019	*
Phylogeny	Acidovorax lacteus sp. nov., isolated from a culture of a bloom-forming cyanobacterium (Microcystis sp.).	Chun SJ, Cui Y, Ko SR, Lee HG, Srivastava A, Oh HM, Ahn CY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0892-9	2017	*
Phylogeny	Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae.	Vaneechoutte M, Janssens M, Avesani V, Delmee M, Deschaght P	Int J Syst Evol Microbiol	10.1099/ijs.0.046102-0	2012	*
	First Report of Corn Bacterial Leaf Stripe Caused by Acidovorax avenae in Guangdong Province, China.	Ji C, Ou J, Xu D, Pan R	Plant Dis	10.1094/PDIS-03-14-0334-PDN	2014	*
	First Report of Acidovorax avenae subsp. avenae Causing Sugarcane Red Stripe in Gabon.	Girard JC, Noell J, Larbre F, Roumagnac P, Rott P	Plant Dis	10.1094/PDIS-09-13-0914-PDN	2014	*
	First Report of Acidovorax avenae subsp. avenae Causing Bacterial Leaf Stripe of Strelitzia nicolai.	Seijo TE, Peres NA	Plant Dis	10.1094/PDIS-03-11-0160	2011	*

References

#3062

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7227

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39547 ; Curators of the CIP;
#46359 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15838

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72414

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97.1 )

#116660 Collection of Institut Pasteur ; Curators of the CIP; CIP 106500

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Acidovorax avenae subsp. avenae ATCC 19860 ATCC 19860

Acidovorax avenae subsp. avenae ATCC 19860 ATCC 19860

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