Name: Acidovorax facilis DSM 649
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2888

Type strain:

Species: Acidovorax facilis

Culture col. no.: DSM 649, ATCC 11228, CCUG 2113, LMG 6221, LMG 2193, CCM 4561

Strain history: <- ATCC <- A. Schatz (Hydrogenomonas facilis)

NCBI tax ID(s): 12917 (species)

Other strains from Acidovorax facilis

A. facilis 332, DSM 550, ATCC 17695, CCUG ...
A. facilis Delft, CCUG 15920, LMG 6599, DSM ...
A. facilis DSM 41
A. facilis IMI 359868
A. facilis IMI 366393
A. facilis IMI 366394

Section

Acidovorax facilis DSM 649 is a mesophilic bacterium of the family Comamonadaceae.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Species	**Acidovorax facilis**
	Full Scientific Name (PNU)	Acidovorax facilis (Schatz and Bovell 1952) Willems et al. 1990

	Synonym	Pseudomonas facilis
	Synonym	"Hydrogenomonas* facilis"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #347]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)

[Ref.: #347]

Culture medium growth

[Ref.: #347]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #347]

Culture medium composition

expand / minimize

[Ref.: #347]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #347]

Culture medium growth

[Ref.: #347]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #347]

Culture medium composition

expand / minimize

[Ref.: #40593]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40593]

Culture medium growth

[Ref.: #40593]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #347]	growth	30 °C
[Ref.: #40593]	growth	25 °C
[Ref.: #44487]	growth	30 °C

[Ref.: #347]	Temperature range	mesophilic
[Ref.: #40593]	Temperature range	mesophilic
[Ref.: #44487]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44487]

Fatty acid	Percentage	ECL
C16:1 ω7c	44.5	15.819
C16:0	27.3	16
C18:1 ω7c /12t/9t	12.4	17.824
C14:0	4.9	14
C12:0	4.7	12
C10:0 3OH	4	11.423
C18:2 ω6,9c/C18:0 ANTE	1.3	17.724
C8:0 3OH	0.9	9.385

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #44487]	7385	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #44487]	3728	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44487]	Sample type/isolated from	Lawn soil
[Ref.: #44487]	Country	USA
[Ref.: #44487]	Country ISO 3 Code	USA
[Ref.: #44487]	Continent	North America

[Ref.: #40593]	Country	USA
[Ref.: #40593]	Country ISO 3 Code	USA
[Ref.: #40593]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden
#Engineered	#Built environment	-
#Environmental	#Terrestrial	#Grassland

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF078765 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	364
Soil Samples	254
Animal Samples	150
Plant Samples	508
Total Samples	1276

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #347]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Acidovorax facilis strain FC-208 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	DQ360425	622	ENA	12917 tax ID	*
[Ref.: #20218]	Acidovorax facilis 16S ribosomal RNA gene, partial sequence	AF078765	1511	ENA	12917 tax ID	*
[Ref.: #20218]	Acidovorax facilis 16S rRNA gene, strain DSM 649	AJ420324	1311	ENA	12917 tax ID	*
[Ref.: #20218]	P.facilis 16S rRNA	X59169	158	ENA	12917 tax ID	*
[Ref.: #20218]	Acidovorax facilis strain LMG 2193 16S ribosomal RNA gene, partial sequence	EU024133	1318	ENA	12917 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidovorax facilis DSM 649	GCA_023913775	scaffold	GenBank	12917 tax ID	*
[Ref.: #66792]	Saccharothrix syringae NRRL B-16468	GCA_009498035	complete	PATRIC	103733 tax ID	*

Availability in culture collections External links

[Ref.: #347]

Culture collection no.

DSM 649, ATCC 11228, CCUG 2113, LMG 6221, LMG 2193, CCM 4561

[Ref.: #20218]

Associated Passport(s) in StrainInfo

899, 896

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov.	Willems A, Falsen E, Pot B, Jantzen E, Hoste B, Vandamme P, Gillis M, Kersters K, De Ley J	Int J Syst Bacteriol	10.1099/00207713-40-4-384	1990	*

References

#347	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 649

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40593 ; Curators of the CIP;
#44487 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2113

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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