Thalassotalea agarivorans (DSM 19706, BCRC 17492, JCM 13379)

Name: Thalassotalea agarivorans (DSM 19706, BCRC 17492, JCM 13379)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2883

Type strain

Culture col. no. DSM 19706 BCRC 17492 JCM 13379 TMA 1

NCBI tax ID(s) 349064

Special Collections DSMZ JCM Literature strains

Links

Thalassotalea agarivorans DSM 19706 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from shallow coastel water.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297356

BCRC 17492,JCM 13379,CCRC 17492,DSM 19706

@ref 20215

Last LPSN update 2025-12-16 09:47:25

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Colwelliaceae

Genus Thalassotalea

Species Thalassotalea agarivorans

Full scientific name Thalassotalea agarivorans (Jean et al. 2006) Zhang et al. 2014

Synonyms (1)

Thalassomonas agarivorans

BacDive ID	Other strains from **Thalassotalea agarivorans** (1)	Type strain
132923	T. agarivorans JAMB-A33, DSM 17297, JCM xxxxx

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31726	negative	1.4-2.2 µm	0.4-0.7 µm	rod-shaped
125438	negative				100
125439	negative				99

Pigmentation

31726

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8257	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8257	positive	growth	28	mesophilic
31726	positive	growth	15-37
31726	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31726	positive	optimum	07-09
31726	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31726	aerobe
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
31726
125438		93.464
125439		95.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31726	NaCl	positive	growth	01-05 %
31726	NaCl	positive	optimum	3 %

Observation

31726

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31726	4853 ChEBI	esculin	+	hydrolysis
31726	17632 ChEBI	nitrate	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31726	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
31726	catalase	+	1.11.1.6
31726	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	methylglyoxal degradation	100	5 of 5
66794	teichoic acid biosynthesis	100	1 of 1
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	Entner Doudoroff pathway	100	10 of 10
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	octane oxidation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	photosynthesis	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	proline metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	flavin biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	starch degradation	70	7 of 10
66794	pyrimidine metabolism	68.89	31 of 45
66794	acetoin degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	tyrosine metabolism	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	factor 420 biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	tryptophan metabolism	57.89	22 of 38
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	lysine metabolism	54.76	23 of 42
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	urea cycle	53.85	7 of 13
66794	ribulose monophosphate pathway	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	kanosamine biosynthesis II	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	cyclohexanol degradation	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	lactate fermentation	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	degradation of pentoses	46.43	13 of 28
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	D-cycloserine biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	degradation of sugar acids	40	10 of 25
66794	arachidonate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	oxidative phosphorylation	37.36	34 of 91
66794	metabolism of disaccharids	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	phenol degradation	35	7 of 20
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	sulfate reduction	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	vitamin E metabolism	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8257	shallow coastel water	south-west coast, Tainan, An-Ping Harbour	Taiwan, Province of China	TWN	Asia
67770	Seawater sample collected in a shallow-water region of An-Ping Harbour		Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ212914 (>99% sequence identity) for Thalassotalea agarivorans subclade from Microbeatlas

Aquatic Samples	546
Soil Samples	5
Animal Samples	27
Plant Samples	5
Total Samples	583

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8257	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3029595v1 assembly for Thalassotalea agarivorans JCM 13379	complete	GCA_030295955	349064.7	8087076027	349064	89.38
67770	IMG-taxon 2599185215 annotated assembly for Thalassotalea agarivorans DSM 19706	scaffold	GCA_900111755	349064.5	2599185215	349064	63.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8257	Thalassomonas agarivorans strain TMA1 16S ribosomal RNA gene, partial sequence	DQ212914	1465		349064

GC content

@ref	GC-content (mol%)	Method
8257	41.0
31726	41
67770	41	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thalassotalea agarivorans DSM 19706
NCBI: GCA_900111755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.30	no
125439	motility	BacteriaNetⓘ	yes	55.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thalassotalea agarivorans strain DSM 19706
PATRIC: 349064.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.23	yes
125438	spore-forming	spore-formingⓘ	no	93.46	yes
125438	aerobic	aerobicⓘ	yes	77.26	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	74.24	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomics Reveals the Metabolic Potential and Functions in the Redistribution of Dissolved Organic Matter in Marine Environments of the Genus Thalassotalea.	Kim M, Cha IT, Lee KE, Lee EY, Park SJ.	Microorganisms	10.3390/microorganisms8091412	2020
	Biochemical characterization of Fsa16295Glu from "Fervidibacter sacchari," the first hyperthermophilic GH50 with beta-1,3-endoglucanase activity and founding member of the subfamily GH50_3.	Covington JK, Torosian N, Cook AM, Palmer M, Bryan SG, Nou NO, Mewalal R, Harmon-Smith M, Blaby IK, Cheng JF, Hess M, Brumm PJ, Singh NK, Venkateswaran K, Hedlund BP.	Front Microbiol	10.3389/fmicb.2024.1355444	2024
Enzymology	Characterization and overexpression of a novel beta-agarase from Thalassomonas agarivorans.	Liang SS, Chen YP, Chen YH, Chiu SH, Liaw LL	J Appl Microbiol	10.1111/jam.12389	2013
	Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae.	Yamano R, Yu J, Haditomo AHC, Jiang C, Mino S, Romalde JL, Kang K, Sakai Y, Sawabe T.	PLoS One	10.1371/journal.pone.0286693	2023
Phylogeny	Description of Thalassotalea piscium gen. nov., sp. nov., isolated from flounder (Paralichthys olivaceus), reclassification of four species of the genus Thalassomonas as members of the genus Thalassotalea gen. nov. and emended description of the genus Thalassomonas.	Zhang Y, Tang K, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.055913-0	2014
Phylogeny	Thalassomonas agariperforans sp. nov., an agarolytic bacterium isolated from marine sand.	Park S, Choi WC, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.027821-0	2010
Phylogeny	Thalassomonas agarivorans sp. nov., a marine agarolytic bacterium isolated from shallow coastal water of An-Ping Harbour, Taiwan, and emended description of the genus Thalassomonas.	Jean WD, Shieh WY, Liu TY	Int J Syst Evol Microbiol	10.1099/ijs.0.64130-0	2006

References

#8257	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19706
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31726	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28002 (see below)
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Thalassotalea agarivorans (DSM 19706, BCRC 17492, JCM 13379)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030295955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media