Colwellia aestuarii (DSM 17314, KCTC 12480, SMK 10)

Name: Colwellia aestuarii (DSM 17314, KCTC 12480, SMK 10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2877

Type strain

Strain Designation SMK-10

Culture col. no. DSM 17314 KCTC 12480 SMK 10 SMK-10

NCBI tax ID(s) 329993

Special Collections DSMZ KCTC Literature strains

History <- J.-H. Yoon; SMK10 <- S.-Y. Jung <- JH Yoon, KRIBB

Links

Colwellia aestuarii SMK-10 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from Saemankum tidal flat.

Gram-negative motile rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 289857

DSM 17314,KCTC 12480

@ref 20215

Last LPSN update 2026-02-09 11:18:22

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Colwelliaceae

Genus Colwellia

Species Colwellia aestuarii

Full scientific name Colwellia aestuarii Jung et al. 2006

Synonyms (1)

Cognaticolwellia aestuarii

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31623	negative	1.8-3.1 µm	0.4-0.5 µm	rod-shaped
67771	negative
125439	negative				99.7
125438	negative				100

Pigmentation

31623

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6892	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6892	positive	growth	25-28	mesophilic
31623	positive	growth	04-32
31623	positive	optimum	25-30	mesophilic
67771	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH
31623	positive	optimum	07-08
31623	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31623	anaerobe
67771	aerobe
125439	obligate aerobe	99.2

Spore formation

@ref	Spore formation	Confidence
31623
125439		99.7
125438		92.399

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31623	NaCl	positive	growth	02-06 %
31623	NaCl	positive	optimum	02-03 %

Observation

31623

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31623	17814 ChEBI	salicin	+	carbon source
31623	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31623	alkaline phosphatase	+	3.1.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6892	Saemankum tidal flat	Pyunsan, Saemankum	Republic of Korea	KOR	Asia
67771	From gaetbul		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ055844 (>99% sequence identity) for Colwellia aestuarii from Microbeatlas

Aquatic Samples	335
Soil Samples	6
Animal Samples	17
Plant Samples	2
Total Samples	360

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6892	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM200002v1 assembly for Cognaticolwellia aestuarii KCTC 12480	scaffold	GCA_002000025	329993.3	329993	64.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6892	Colwellia aestuarii strain SMK-10 16S ribosomal RNA gene, partial sequence	DQ055844	1496		329993

GC content

31623

GC-content (mol%)39.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cognaticolwellia aestuarii KCTC 12480
NCBI: GCA_002000025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	73.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cognaticolwellia aestuarii KCTC 12480
NCBI: GCA_002000025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	94.92	no
125438	aerobic	aerobicⓘ	yes	73.86	no
125438	spore-forming	spore-formingⓘ	no	92.40	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	yes	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Cultivating the uncultured: Harnessing the "sandwich agar plate" approach to isolate heme-dependent bacteria from marine sediment.	Zhang J, Liang QY, Mu DS, Lian F, Gong Y, Ye M, Chen GJ, Ye Y, Du ZJ.	mLife	10.1002/mlf2.12093	2024
Phylogeny	Whole genome analysis calls for a taxonomic rearrangement of the genus Colwellia.	Liu A, Zhang YJ, Cheng P, Peng YJ, Blom J, Xue QJ.	Antonie Van Leeuwenhoek	10.1007/s10482-020-01405-6	2020
	Microbial community response and migration of petroleum compounds during a sea-ice oil spill experiment in Svalbard.	Boccadoro C, Krolicka A, Receveur J, Aeppli C, Le Floch S.	Mar Environ Res	10.1016/j.marenvres.2018.09.007	2018
Pathogenicity	Shell Disease Syndrome Is Associated with Reduced and Shifted Epibacterial Diversity on the Carapace of the Crustacean Cancer pagurus.	Bergen N, Kramer P, Romberg J, Wichels A, Gerlach G, Brinkhoff T.	Microbiol Spectr	10.1128/spectrum.03419-22	2022
Enzymology	Diversity and enzyme properties of protease-producing bacteria isolated from sub-Antarctic sediments of Isla de Los Estados, Argentina.	Olivera NL, Sequeiros C, Nievas ML.	Extremophiles	10.1007/s00792-007-0064-3	2007
	Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary Probiotics.	Gupta S, Feckaninova A, Lokesh J, Koscova J, Sorensen M, Fernandes J, Kiron V.	Front Microbiol	10.3389/fmicb.2018.03247	2018
Enzymology	Evaluation of a new high-throughput method for identifying quorum quenching bacteria.	Tang K, Zhang Y, Yu M, Shi X, Coenye T, Bossier P, Zhang XH.	Sci Rep	10.1038/srep02935	2013
	Molecular analysis of bacterial communities and detection of potential pathogens in a recirculating aquaculture system for Scophthalmus maximus and Solea senegalensis.	Martins P, Martins P, Cleary DF, Pires AC, Rodrigues AM, Quintino V, Calado R, Gomes NC.	PLoS One	10.1371/journal.pone.0080847	2013
Phylogeny	Colwellia mytili sp. nov., isolated from mussel Mytilus edulis.	Kim YO, Park IS, Park S, Nam BH, Jung YT, Kim DG, Yoon JH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001564	2017
Phylogeny	Colwellia sediminilitoris sp. nov., isolated from a tidal flat.	Park S, Jung YT, Yoon JH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001183	2016
Phylogeny	Colwellia meonggei sp. nov., a novel gammaproteobacterium isolated from sea squirt Halocynthia roretzi.	Kim YO, Park S, Nam BH, Jung YT, Kim DG, Yoon JH.	Antonie Van Leeuwenhoek	10.1007/s10482-013-0022-2	2013
Phylogeny	Colwellia polaris sp. nov., a psychrotolerant bacterium isolated from Arctic sea ice.	Zhang DC, Yu Y, Xin YH, Liu HC, Zhou PJ, Zhou YG.	Int J Syst Evol Microbiol	10.1099/ijs.0.65596-0	2008
Phylogeny	Colwellia agarivorans sp. nov., an agar-digesting marine bacterium isolated from coastal seawater.	Xu ZX, Zhang HX, Han JR, Dunlap CA, Rooney AP, Mu DS, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001897	2017
Phylogeny	Colwellia aquaemaris sp. nov., isolated from the Cynoglossus semilaevis culture tank in a recirculating mariculture system.	Liu Y, Liu LZ, Zhong ZP, Zhou YG, Liu Y, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.063305-0	2014
Phylogeny	Colwellia chukchiensis sp. nov., a psychrotolerant bacterium isolated from the Arctic Ocean.	Yu Y, Li HR, Zeng YX	Int J Syst Evol Microbiol	10.1099/ijs.0.022111-0	2010
Phylogeny	Colwellia aestuarii sp. nov., isolated from a tidal flat sediment in Korea.	Jung SY, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.63920-0	2006

References

#6892	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17314
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27909	IJSEM 33 2006 ( DOI 10.1099/ijs.0.63920-0 , PubMed 16403863 )
#31623	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27909
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Colwellia aestuarii (DSM 17314, KCTC 12480, SMK 10)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002000025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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