Name: Colwellia aestuarii SMK-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2877

Type strain:

Species: Colwellia aestuarii

Strain Designation: SMK-10

Culture col. no.: DSM 17314, KCTC 12480, SMK 10

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 329993 (species)

SI-ID 289857

DSM 17314, KCTC 12480

Section

Colwellia aestuarii SMK-10 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Saemankum tidal flat.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Colwellia*
	Species	**Colwellia aestuarii**
	Full Scientific Name (LPSN)	Colwellia aestuarii Jung et al. 2006

Synonym

Cognaticolwellia aestuarii

Information on morphological and physiological properties Morphology

[Ref.: #31623]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31623]	Cell length	1.8-3.1 µm

[Ref.: #31623]	Cell width	0.4-0.5 µm

[Ref.: #31623]	Cell shape	rod-shaped

[Ref.: #31623]	Motility	yes

[Ref.: #31623]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6892]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6892]

Culture medium growth

[Ref.: #6892]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6892]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6892]	growth	25-28 °C
[Ref.: #31623]	growth	04-32 °C
[Ref.: #31623]	optimum	25-30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #6892]	Temperature range	mesophilic
[Ref.: #31623]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31623]			optimum	07-08
[Ref.: #31623]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31623]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31623]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31623]		NaCl		growth	02-06	%
[Ref.: #31623]		NaCl		optimum	02-03	%

[Ref.: #31623]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31623]		salicin ChEBI	+	carbon source
[Ref.: #31623]		xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31623]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6892]	Sample type/isolated from	Saemankum tidal flat
[Ref.: #6892]	Geographic location (country and/or sea, region)	Pyunsan, Saemankum
[Ref.: #6892]	Country	Republic of Korea
[Ref.: #6892]	Country ISO 3 Code	KOR
[Ref.: #6892]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From gaetbul
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ055844 (>99% sequence identity) for Colwellia aestuarii from Microbeatlas

Aquatic Samples	335
Soil Samples	6
Animal Samples	17
Plant Samples	2
Total Samples	360

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6892]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6892]	Colwellia aestuarii strain SMK-10 16S ribosomal RNA gene, partial sequence	DQ055844	1496	ENA	329993 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cognaticolwellia aestuarii KCTC 12480	GCA_002000025	scaffold	GenBank	329993 tax ID	*
[Ref.: #66792]	Colwellia aestuarii strain KCTC 12480	329993.3	wgs	PATRIC	329993 tax ID	*

[Ref.: #31623]

GC-content

39.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cognaticolwellia aestuarii KCTC 12480 NCBI: GCA_002000025.1
[Ref.: #69480]	flagellated	yes	90.615	no
[Ref.: #69480]	gram-positive	no	98.971	yes
[Ref.: #69480]	anaerobic	no	96.131	no
[Ref.: #69480]	aerobic	yes	79.401	no
[Ref.: #69480]	halophile	yes	63.807	no
[Ref.: #69480]	spore-forming	no	96.302	no
[Ref.: #69480]	glucose-util	yes	81.408	no
[Ref.: #69480]	thermophile	no	99.461	no
[Ref.: #69480]	glucose-ferment	no	80.909	no
[Ref.: #69480]	motile	yes	90.447	yes

Availability in culture collections External links

[Ref.: #6892]

Culture collection no.

DSM 17314, KCTC 12480, SMK 10

[Ref.: #72401]

SI-ID 289857

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Colwellia agarivorans sp. nov., an agar-digesting marine bacterium isolated from coastal seawater.	Xu ZX, Zhang HX, Han JR, Dunlap CA, Rooney AP, Mu DS, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001897	2017	*
Phylogeny	Colwellia aquaemaris sp. nov., isolated from the Cynoglossus semilaevis culture tank in a recirculating mariculture system.	Liu Y, Liu LZ, Zhong ZP, Zhou YG, Liu Y, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.063305-0	2014	*
Phylogeny	Colwellia chukchiensis sp. nov., a psychrotolerant bacterium isolated from the Arctic Ocean.	Yu Y, Li HR, Zeng YX	Int J Syst Evol Microbiol	10.1099/ijs.0.022111-0	2010	*
Phylogeny	Colwellia aestuarii sp. nov., isolated from a tidal flat sediment in Korea.	Jung SY, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.63920-0	2006	*

References

#6892

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17314

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31623

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27909 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72401

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289857.1 )

#27909

IJSEM 33 2006 ( DOI 10.1099/ijs.0.63920-0 , PubMed 16403863 )

* These data were automatically processed and therefore are not curated

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Cognaticolwellia aestuarii KCTC 12480

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