Name: Butyricicoccus pullicaecorum 25-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2871

Type strain:

Species: Butyricicoccus pullicaecorum

Strain Designation: 25-3

Culture col. no.: DSM 23266, CCUG 55265, LMG 24109

Strain history: <- E. Moore, CCUG <- V. Eeckhaut, Lab. Microbiology, Ghent Univ., Belgium {2006}

NCBI tax ID(s): 1121128 (strain), 501571 (species)

Section

Butyricicoccus pullicaecorum 25-3 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from cecal content .

coccus-shaped
Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Butyricicoccus*
	Species	**Butyricicoccus pullicaecorum**
	Full Scientific Name (PNU)	Butyricicoccus pullicaecorum Eeckhaut et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32584]	Gram stain	positive
[Ref.: #32584]	Cell length	1.2-1.5 µm
[Ref.: #32584]	Cell shape	coccus-shaped
[Ref.: #32584]	Motility	no

[Ref.: #60513]

Incubation period

2 days

[Ref.: #32584]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16766]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #16766]

Culture medium growth

[Ref.: #16766]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16766]

Culture medium composition

expand / minimize

[Ref.: #16766]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #16766]

Culture medium growth

[Ref.: #16766]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16766]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16766]	growth	37 °C
[Ref.: #32584]	growth	42 °C
[Ref.: #32584]	optimum	42 °C
[Ref.: #60513]	growth	37 °C

[Ref.: #16766]	Temperature range	mesophilic
[Ref.: #32584]	Temperature range	thermophilic
[Ref.: #60513]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16766]	Oxygen tolerance	anaerobe
[Ref.: #32584]	Oxygen tolerance	anaerobe
[Ref.: #60513]	Oxygen tolerance	anaerobe

[Ref.: #32584]

Ability of spore formation

[Ref.: #32584]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32584]	cellobiose ChEBI	+	carbon source
[Ref.: #32584]	esculin ChEBI	+	hydrolysis
[Ref.: #32584]	glucose ChEBI	+	carbon source
[Ref.: #32584]	maltose ChEBI	+	carbon source
[Ref.: #32584]	mannose ChEBI	+	carbon source
[Ref.: #32584]	salicin ChEBI	+	carbon source
[Ref.: #32584]	sucrose ChEBI	+	carbon source
[Ref.: #32584]	trehalose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16766]	Sample type/isolated from	cecal content (4-week-old broiler chicken)
[Ref.: #16766]	Geographic location (country and/or sea, region)	Maldegem
[Ref.: #16766]	Country	Belgium
[Ref.: #16766]	Country ISO 3 Code	BEL
[Ref.: #16766]	Continent	Europe

[Ref.: #60513]	Sample type/isolated from	Chicken feces,4-week old broiler
[Ref.: #60513]	Sampling date	2006-11-24
[Ref.: #60513]	Geographic location (country and/or sea, region)	Gent
[Ref.: #60513]	Country	Belgium
[Ref.: #60513]	Country ISO 3 Code	BEL
[Ref.: #60513]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU410376 (>99% sequence identity) for Butyricicoccus pullicaecorum subclade from Microbeatlas

Aquatic Samples	195
Soil Samples	391
Animal Samples	28431
Plant Samples	80
Total Samples	29097

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16766]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16766]	Butyricicoccus pullicaecorum strain 25-3 16S ribosomal RNA gene, partial sequence	EU410376	1482	ENA	501571 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Butyricicoccus pullicaecorum DSM 23266 DSM 23266	GCA_900167005	scaffold	GenBank	1121128 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum DSM 23266 strain DSM 23266	1121128.3	wgs	PATRIC	1121128 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum DSM 23266	2585428076	draft	JGI IMG/M	1121128 tax ID	*
[Ref.: #66792]	uncultured Mediterraneibacter sp. REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_G_21_1740.190	GCA_934309345	contig	PATRIC	2316024 tax ID	*

[Ref.: #16766]	GC-content	54.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32584]	GC-content	54.5 mol%

Availability in culture collections External links

[Ref.: #16766]

Culture collection no.

DSM 23266, CCUG 55265, LMG 24109

[Ref.: #20218]

Associated Passport(s) in StrainInfo

836228, 822750

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Butyricicoccus pullicaecorum gen. nov., sp. nov., an anaerobic, butyrate-producing bacterium isolated from the caecal content of a broiler chicken.	Eeckhaut V, Van Immerseel F, Teirlynck E, Pasmans F, Fievez V, Snauwaert C, Haesebrouck F, Ducatelle R, Louis P, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65730-0	2008	*
Genetics	Safety assessment of the butyrate-producing Butyricicoccus pullicaecorum strain 25-3(T), a potential probiotic for patients with inflammatory bowel disease, based on oral toxicity tests and whole genome sequencing.	Steppe M, Van Nieuwerburgh F, Vercauteren G, Boyen F, Eeckhaut V, Deforce D, Haesebrouck F, Ducatelle R, Van Immerseel F	Food Chem Toxicol	10.1016/j.fct.2014.06.024	2014	*
Metabolism	Interindividual differences in response to treatment with butyrate-producing Butyricicoccus pullicaecorum 25-3T studied in an in vitro gut model.	Geirnaert A, Wang J, Tinck M, Steyaert A, Van den Abbeele P, Eeckhaut V, Vilchez-Vargas R, Falony G, Laukens D, De Vos M, Van Immerseel F, Raes J, Boon N, Van de Wiele T	FEMS Microbiol Ecol	10.1093/femsec/fiv054	2015	*
Phylogeny	Agathobaculum butyriciproducens gen. nov. sp. nov., a strict anaerobic, butyrate-producing gut bacterium isolated from human faeces and reclassification of Eubacterium desmolans as Agathobaculum desmolans comb. nov.	Ahn S, Jin TE, Chang DH, Rhee MS, Kim HJ, Lee SJ, Park DS, Kim BC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001195	2016	*
Metabolism	Inulin-type fructan degradation capacity of Clostridium cluster IV and XIVa butyrate-producing colon bacteria and their associated metabolic outcomes.	Moens F, De Vuyst L	Benef Microbes	10.3920/BM2016.0142	2017	*
	The Probiotic Butyricicoccus pullicaecorum Reduces Feed Conversion and Protects from Potentially Harmful Intestinal Microorganisms and Necrotic Enteritis in Broilers.	Eeckhaut V, Wang J, Van Parys A, Haesebrouck F, Joossens M, Falony G, Raes J, Ducatelle R, Van Immerseel F	Front Microbiol	10.3389/fmicb.2016.01416	2016	*
	Butyrate Producers as Potential Next-Generation Probiotics: Safety Assessment of the Administration of Butyricicoccus pullicaecorum to Healthy Volunteers.	Boesmans L, Valles-Colomer M, Wang J, Eeckhaut V, Falony G, Ducatelle R, Van Immerseel F, Raes J, Verbeke K	mSystems	10.1128/mSystems.00094-18	2018	*

References

#16766

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23266

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32584

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28799 (see below)

#60513 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55265

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28799

IJSEM 2799 2008 ( DOI 10.1099/ijs.0.65730-0 , PubMed 19060061 )

* These data were automatically processed and therefore are not curated

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