Name: Butyricicoccus pullicaecorum 25-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2871

Type strain:

Species: Butyricicoccus pullicaecorum

Strain Designation: 25-3

Culture col. no.: DSM 23266, CCUG 55265, LMG 24109

Strain history: <- E. Moore, CCUG <- V. Eeckhaut, Lab. Microbiology, Ghent Univ., Belgium {2006}

NCBI tax ID(s): 1121128 (strain), 501571 (species)

Section

Butyricicoccus pullicaecorum 25-3 is an anaerobe, mesophilic, gram-positive bacterium that was isolated from cecal content .

coccus-shaped
gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Clostridia
	Order	Eubacteriales
	Family	Oscillospiraceae
	Genus	Butyricicoccus
	Species	Butyricicoccus pullicaecorum
	Full Scientific Name (PNU)	Butyricicoccus pullicaecorum Eeckhaut et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32584]	Gram stain	positive
[Ref.: #32584]	Cell length	1.2-1.5 µm
[Ref.: #32584]	Cell shape	coccus-shaped
[Ref.: #32584]	Motility	no

[Ref.: #60513]

Incubation period

2 days

[Ref.: #32584]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16766]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110), anaerobic

[Ref.: #16766]

Culture medium growth

[Ref.: #16766]

Culture medium link

Medium recipe at BacMedia

[Ref.: #16766]

Culture medium composition

expand / minimize

[Ref.: #16766]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #16766]

Culture medium growth

[Ref.: #16766]

Culture medium link

Medium recipe at BacMedia

[Ref.: #16766]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16766]	growth	37 °C
[Ref.: #32584]	growth	42 °C
[Ref.: #32584]	optimum	42 °C
[Ref.: #60513]	growth	37 °C

[Ref.: #16766]	Temperature range	mesophilic
[Ref.: #32584]	Temperature range	thermophilic
[Ref.: #60513]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16766]	Oxygen tolerance	anaerobe
[Ref.: #32584]	Oxygen tolerance	anaerobe
[Ref.: #60513]	Oxygen tolerance	anaerobe

[Ref.: #32584]

Ability of spore formation

[Ref.: #32584]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32584]	cellobiose ChEBI	+	carbon source
[Ref.: #32584]	esculin ChEBI	+	hydrolysis
[Ref.: #32584]	glucose ChEBI	+	carbon source
[Ref.: #32584]	maltose ChEBI	+	carbon source
[Ref.: #32584]	mannose ChEBI	+	carbon source
[Ref.: #32584]	salicin ChEBI	+	carbon source
[Ref.: #32584]	sucrose ChEBI	+	carbon source
[Ref.: #32584]	trehalose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16766]	Sample type/isolated from	cecal content (4-week-old broiler chicken)
[Ref.: #16766]	Geographic location (country and/or sea, region)	Maldegem
[Ref.: #16766]	Country	Belgium
[Ref.: #16766]	Country ISO 3 Code	BEL
[Ref.: #16766]	Continent	Europe

[Ref.: #60513]	Sample type/isolated from	Chicken feces,4-week old broiler
[Ref.: #60513]	Sampling date	2006-11-24
[Ref.: #60513]	Geographic location (country and/or sea, region)	Gent
[Ref.: #60513]	Country	Belgium
[Ref.: #60513]	Country ISO 3 Code	BEL
[Ref.: #60513]	Continent	Europe

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16766]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16766]	Butyricicoccus pullicaecorum strain 25-3 16S ribosomal RNA gene, partial sequence	EU410376	1482	ENA	501571 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Butyricicoccus pullicaecorum DSM 23266	GCA_900167005	scaffold	GenBank	1121128 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum MGYG-HGUT-01434	GCA_902374965	scaffold	GenBank	501571 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum Butyricicoccus pullicaecorum_25.3(T)	GCA_900143195	scaffold	GenBank	501571 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum An180	GCA_002160355	contig	GenBank	501571 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum An179	GCA_002160385	contig	GenBank	501571 tax ID	*
[Ref.: #66792]	Butyricicoccus pullicaecorum DSM 23266 strain DSM 23266	1121128.3	wgs	PATRIC	1121128 tax ID	*

[Ref.: #16766]	GC-content	54.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32584]	GC-content	54.5 mol%

Availability in culture collections External links

[Ref.: #16766]

Culture collection no.

DSM 23266, CCUG 55265, LMG 24109

[Ref.: #20218]

Associated Passport(s) in StrainInfo

836228, 822750

References

#16766

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23266

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32584

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28799 (see below)

#60513 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55265

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28799

IJSEM 2799 2008 ( DOI 10.1099/ijs.0.65730-0 )

* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Butyricicoccus pullicaecorum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF