Name: Clostridiisalibacter paucivorans 37HS60
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2869

Type strain:

Species: Clostridiisalibacter paucivorans

Strain Designation: 37HS60

Culture col. no.: DSM 22131, CCUG 53849, JCM 14354

Strain history: P.-P. Liebgott 37HS60.

NCBI tax ID(s): 1121289 (strain), 408753 (species)

SI-ID 402963

DSM 22131, CCUG 53849

Section

Clostridiisalibacter paucivorans 37HS60 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from mud of olive mill wastewater evaporation pond.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridiisalibacter*
	Species	**Clostridiisalibacter paucivorans**
	Full Scientific Name (LPSN)	Clostridiisalibacter paucivorans Liebgott et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32243]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32243]	Cell length	5.5 µm

[Ref.: #32243]	Cell width	0.5 µm

[Ref.: #32243]	Cell shape	rod-shaped

[Ref.: #32243]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.822

[Ref.: #60034]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16150]

Culture medium

MARINITOGA MEDIUM (DSMZ Medium 904)

[Ref.: #16150]

Culture medium growth

[Ref.: #16150]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16150]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16150]	growth	40 °C
[Ref.: #32243]	growth	20-50 °C
[Ref.: #32243]	optimum	42 °C
[Ref.: #60034]	growth	37 °C
[Ref.: #67770]	growth	40 °C

[Ref.: #16150]	Temperature range	thermophilic
[Ref.: #32243]	Temperature range	thermophilic
[Ref.: #60034]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #32243]			optimum	6.8
[Ref.: #32243]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16150]	Oxygen tolerance	anaerobe
[Ref.: #32243]	Oxygen tolerance	anaerobe
[Ref.: #60034]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #32243]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.506

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32243]		pyruvate ChEBI	+	carbon source
[Ref.: #32243]		succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16150]	Sample type/isolated from	mud of olive mill wastewater evaporation pond
[Ref.: #16150]	Geographic location (country and/or sea, region)	Marrakesh
[Ref.: #16150]	Country	Morocco
[Ref.: #16150]	Country ISO 3 Code	MAR
[Ref.: #16150]	Continent	Africa

[Ref.: #60034]	Sample type/isolated from	Wastewater,olive mill
[Ref.: #60034]	Sampling date	2005-03-15
[Ref.: #60034]	Geographic location (country and/or sea, region)	Marrakesh
[Ref.: #60034]	Country	Morocco
[Ref.: #60034]	Country ISO 3 Code	MAR
[Ref.: #60034]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Olive mill wastewater evaporation pond located in Marrakesh
[Ref.: #67770]	Country	Morocco
[Ref.: #67770]	Country ISO 3 Code	MAR
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Industrial wastewater
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF026082 (>99% sequence identity) for Clostridiisalibacter paucivorans subclade from Microbeatlas

Aquatic Samples	135
Soil Samples	45
Animal Samples	107
Plant Samples	16
Total Samples	303

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16150]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16150]	Clostridiisalibacter paucivorans strain 37HS60 16S ribosomal RNA gene, partial sequence	EF026082	1434	ENA	408753 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridiisalibacter paucivorans DSM 22131	GCA_000620125	scaffold	GenBank	1121289 tax ID
[Ref.: #66792]	Clostridiisalibacter paucivorans DSM 22131	1121289.3	wgs	PATRIC	1121289 tax ID	*
[Ref.: #66792]	Clostridiisalibacter paucivorans DSM 22131	2556921093	draft	JGI IMG/M	1121289 tax ID	*

[Ref.: #16150]	GC-content	33.0 mol%
[Ref.: #32243]	GC-content	33 mol%
[Ref.: #67770]	GC-content	33 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridiisalibacter paucivorans DSM 22131 DSM 22131 NCBI: GCA_000620125.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridiisalibacter paucivorans DSM 22131 PATRIC: 1121289.3
[Ref.: #69480]	motile	yes	88.623	yes
[Ref.: #69480]	flagellated	no	73.543	no
[Ref.: #69480]	gram-positive	yes	78.287	yes
[Ref.: #69480]	anaerobic	yes	99.251	no
[Ref.: #69480]	aerobic	no	97.398	yes
[Ref.: #69480]	halophile	no	78.669	no
[Ref.: #69480]	spore-forming	yes	94.551	no
[Ref.: #69480]	thermophile	no	75.312	no
[Ref.: #69480]	glucose-util	yes	83.238	no
[Ref.: #69480]	glucose-ferment	no	53.668	no

Availability in culture collections External links

[Ref.: #16150]

Culture collection no.

DSM 22131, CCUG 53849, JCM 14354

[Ref.: #72393]

SI-ID 402963

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater.	Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ, Wu M, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijs.0.034660-0	2012	*
Phylogeny	Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil.	Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat M	Int J Syst Evol Microbiol	10.1099/ijs.0.017715-0	2010	*
Phylogeny	Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater.	Liebgott PP, Joseph M, Fardeau ML, Cayol JL, Falsen E, Chamkh F, Qatibi AI, Labat M	Int J Syst Evol Microbiol	10.1099/ijs.0.65182-0	2008	*

References

#16150

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22131

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32243

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28484 (see below)

#60034 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53849

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72393

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402963.1 )

#28484

IJSEM 61 2008 ( DOI 10.1099/ijs.0.65182-0 , PubMed 18175684 )

* These data were automatically processed and therefore are not curated

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Clostridiisalibacter paucivorans DSM 22131 DSM 22131

Clostridiisalibacter paucivorans DSM 22131

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