Clostridiisalibacter paucivorans (DSM 22131, CCUG 53849, JCM 14354)

Name: Clostridiisalibacter paucivorans (DSM 22131, CCUG 53849, JCM 14354)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2869

Type strain

Strain Designation 37HS60

Culture col. no. DSM 22131 CCUG 53849 JCM 14354 37HS60

NCBI tax ID(s) 1121289 408753

Special Collections DSMZ CCUG JCM Literature strains

History <- T. Itoh, JCM/RIKEN <- P. P. Liebgott, Microbiologie et Biotechnologie des Environnements Chauds, IRD, Marseille, France; 37HS60 P.-P. Liebgott 37HS60.

Links

Clostridiisalibacter paucivorans 37HS60 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from mud of olive mill wastewater evaporation pond.

spore-forming Gram-positive motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402963

JCM 14354,DSM 22131,CCUG 53849

@ref 20215

Last LPSN update 2026-02-09 11:18:22

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Thermohalobacteraceae

Genus Clostridiisalibacter

Species Clostridiisalibacter paucivorans

Full scientific name Clostridiisalibacter paucivorans Liebgott et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32243	positive	5.5 µm	0.5 µm	rod-shaped

Colony morphology

60034

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16150	MARINITOGA MEDIUM (DSMZ Medium 904)		Medium recipe at MediaDive	Name: MARINITOGA MEDIUM (DSMZ Medium 904) Composition: Sea Salt 30.0 g/l PIPES 6.0 g/l D-Glucose 2.5 g/l Tryptone 1.0 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16150	positive	growth	40
32243	positive	growth	20-50
32243	positive	optimum	42
60034	positive	growth	37
67770	positive	growth	40

Culture pH

@ref	Ability	Type	PH	PH range
32243	positive	optimum	6.8
32243	positive	growth	5.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16150	anaerobe
32243	anaerobe
60034	anaerobe
125439	anaerobe	100

Spore formation

32243

Spore formationyes

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32243	15361 ChEBI	pyruvate	+	carbon source
32243	30031 ChEBI	succinate	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Industrial wastewater
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Pond (small)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16150	mud of olive mill wastewater evaporation pond		Marrakesh	Morocco	MAR	Africa
60034	Wastewater,olive mill	2005-03-15	Marrakesh	Morocco	MAR	Africa
67770	Olive mill wastewater evaporation pond located in Marrakesh			Morocco	MAR	Africa

Taxonmaps

69479

Global distribution of 16S sequence EF026082 (>99% sequence identity) for Clostridiisalibacter paucivorans subclade from Microbeatlas

Aquatic Samples	135
Soil Samples	45
Animal Samples	107
Plant Samples	16
Total Samples	303

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16150	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM62012v1 assembly for Clostridiisalibacter paucivorans DSM 22131	scaffold	GCA_000620125	1121289.3	2556921093	1121289	58.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16150	Clostridiisalibacter paucivorans strain 37HS60 16S ribosomal RNA gene, partial sequence	EF026082	1434		408753

GC content

@ref	GC-content (mol%)	Method
16150	33.0
32243	33
67770	33	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridiisalibacter paucivorans DSM 22131
NCBI: GCA_000620125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	85.60	no
125439	motility	BacteriaNetⓘ	yes	78.50	no
125439	gram_stain	BacteriaNetⓘ	variable	70.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	100.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridiisalibacter paucivorans DSM 22131
PATRIC: 1121289.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	56.27	no
125438	anaerobic	anaerobicⓘ	yes	89.81	yes
125438	spore-forming	spore-formingⓘ	yes	66.77	no
125438	aerobic	aerobicⓘ	no	96.46	no
125438	thermophilic	thermophileⓘ	no	69.00	no
125438	flagellated	motile2+ⓘ	yes	80.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Phylogeny, Metabolic Potentials, and Environmental Adaptation of an Anaerobe, Abyssisolibacter sp. M8S5, Isolated from Cold Seep Sediments of the South China Sea.	Liu Y, Chen S, Wang J, Shao B, Fang J, Cao J.	Microorganisms	10.3390/microorganisms11092156	2023
Genetics	Detailed description of Senegalia massiliensis strain SIT17^T , a bacterium isolated from the human gut.	Traore SI, Ngom II, Lo CI, Di Pinto F, Sokhna C, Fournier PE, Raoult D, Fenollar F.	New Microbes New Infect	10.1016/j.nmni.2020.100700	2020
	A new family of the order Alteromonadales, Aegicerorhabdaceae fam. nov. with description of two novel species Aegicerorhabdus qinzhovensis gen. nov., sp. nov., and Gallaecimonas aegicerasi sp. nov.	Li M, Li W, Gao M, Lan J, Gao C, Yi X.	Antonie Van Leeuwenhoek	10.1007/s10482-025-02184-8	2025
Phylogeny	Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater.	Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ, Wu M, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijs.0.034660-0	2012
Phylogeny	Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil.	Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat M	Int J Syst Evol Microbiol	10.1099/ijs.0.017715-0	2010
Phylogeny	Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater.	Liebgott PP, Joseph M, Fardeau ML, Cayol JL, Falsen E, Chamkh F, Qatibi AI, Labat M	Int J Syst Evol Microbiol	10.1099/ijs.0.65182-0	2008

References

#16150	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22131
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28484	IJSEM 61 2008 ( DOI 10.1099/ijs.0.65182-0 , PubMed 18175684 )
#32243	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28484
#60034	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53849
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridiisalibacter paucivorans (DSM 22131, CCUG 53849, JCM 14354)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000620125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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