Name: Clostridium arbusti SL206
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2857

Type strain:

Species: Clostridium arbusti

Strain Designation: SL206

Culture col. no.: DSM 23575, JCM 14858, KCTC 5449

Strain history: <- YH Chang, KRIBB, SL206

NCBI tax ID(s): 1137848 (species)

SI-ID 400784

DSM 23575

Section

Clostridium arbusti SL206 is an anaerobe, mesophilic, motile bacterium that was isolated from pear orchard soil .

motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium arbusti**
	Full Scientific Name (LPSN)	Clostridium arbusti Jung et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #67771]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17228]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #17228]

Culture medium growth

[Ref.: #17228]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17228]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17228]	growth	35 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17228]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17228]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17228]	Sample type/isolated from	pear orchard soil (30 cm depth)
[Ref.: #17228]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #17228]	Country	Republic of Korea
[Ref.: #17228]	Country ISO 3 Code	KOR
[Ref.: #17228]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil sample from a pear orchard in Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil from a pear orchard
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Grove (Orchard)
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17228]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17228]	Clostridium arbusti SL206 16S ribosomal RNA gene, partial sequence	EU816420	1347	ENA	545243 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium arbusti SL206	GCA_000246895	contig	GenBank	545243 tax ID	*
[Ref.: #66792]	Clostridium arbusti SL206	545243.4	wgs	PATRIC	545243 tax ID	*
[Ref.: #66792]	Clostridium arbusti SL206	2551306534	draft	JGI IMG/M	545243 tax ID	*

[Ref.: #17228]	GC-content	31.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	31.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium arbusti SL206 PATRIC: 545243.4
[Ref.: #69480]	gram-positive	yes	80.14	yes
[Ref.: #69480]	anaerobic	yes	96.655	no
[Ref.: #69480]	halophile	no	98.291	no
[Ref.: #69480]	spore-forming	yes	95.618	no
[Ref.: #69480]	glucose-util	yes	87.948	no
[Ref.: #69480]	thermophile	no	95.994	yes
[Ref.: #69480]	aerobic	no	94.529	yes
[Ref.: #69480]	motile	yes	83.97	yes
[Ref.: #69480]	flagellated	no	50.722	no
[Ref.: #69480]	glucose-ferment	no	51.078	no

Availability in culture collections External links

[Ref.: #17228]

Culture collection no.

DSM 23575, JCM 14858, KCTC 5449

[Ref.: #72381]

SI-ID 400784

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Synthesis of raffinose by transfructosylation using recombinant levansucrase from Clostridium arbusti SL206.	Li W, Yu S, Zhang T, Jiang B, Mu W	J Sci Food Agric	10.1002/jsfa.7903	2016	*
Genetics	Genome sequence of the anaerobic bacterium Clostridium arbusti SL206(T).	Kim DS, Jung MY, Sin Y, Kim DW, Paek J, Kim RN, Park IS, Kook JK, Nam SH, Kim A, Kang A, Park HS, Choi SH, Chang YH	J Bacteriol	10.1128/JB.00368-12	2012	*
Phylogeny	Clostridium arbusti sp. nov., an anaerobic bacterium isolated from pear orchard soil.	Jung MY, Park IS, Kim W, Kim HL, Paek WK, Chang YH	Int J Syst Evol Microbiol	10.1099/ijs.0.013953-0	2009	*

References

#17228

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23575

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72381

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400784.1 )

* These data were automatically processed and therefore are not curated

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