Name: Enterocloster lavalensis CCRI-9842
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2849

Type strain:

Species: Enterocloster lavalensis

Strain Designation: CCRI-9842

Culture col. no.: DSM 19851, CCUG 54291, JCM 14986, NML 03-A-015, CIP 109511, KCTC 15153

Strain history: CIP <- 2007, CCUG <- CHUL Bergeron, Quebec, Canada: strain CCRI-9842

NCBI tax ID(s): 460384 (species)

SI-ID 361149

CCUG 54291, JCM 14986, DSM 19851, CIP 109511

Special Collections

Section

When using BacDive for research please cite our paper

Enterocloster lavalensis CCRI-9842 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from human faeces, rectal swab.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Enterocloster*
	Species	**Enterocloster lavalensis**
	Full Scientific Name (LPSN)	Enterocloster lavalensis (Domingo et al. 2009) Haas and Blanchard 2020

Synonym

Clostridium lavalense

Information on morphological and physiological properties Morphology

[Ref.: #28932]	Gram stain	positive
[Ref.: #120574]	Gram stain	positive

[Ref.: #28932]	Cell length	2.5-6.0 µm

[Ref.: #28932]	Cell width	0.8-1.5 µm

[Ref.: #28932]	Cell shape	rod-shaped
[Ref.: #120574]	Cell shape	rod-shaped

[Ref.: #28932]	Motility	yes
[Ref.: #120574]	Motility	no

[Ref.: #60125]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8290]

Culture medium

BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c)

[Ref.: #8290]

Culture medium growth

[Ref.: #8290]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8290]

Culture medium composition

expand / minimize

[Ref.: #37748]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #37748]

Culture medium growth

[Ref.: #37748]

Culture medium composition

expand / minimize

[Ref.: #120574]

Culture medium

CIP Medium 20

[Ref.: #120574]

Culture medium growth

[Ref.: #120574]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8290]	growth	35 °C
[Ref.: #28932]	growth	35-37 °C
[Ref.: #28932]	optimum	36 °C
[Ref.: #37748]	growth	37 °C
[Ref.: #60125]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8290]	Oxygen tolerance	anaerobe
[Ref.: #28932]	Oxygen tolerance	anaerobe
[Ref.: #60125]	Oxygen tolerance	anaerobe
[Ref.: #120574]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %99.3

[Ref.: #28932]

Ability of spore formation

yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28932]	arabinose ChEBI	+	carbon source
[Ref.: #28932]	fructose ChEBI	+	carbon source
[Ref.: #28932]	galactose ChEBI	+	carbon source
[Ref.: #28932]	glucose ChEBI	+	carbon source
[Ref.: #28932]	lactose ChEBI	+	carbon source
[Ref.: #28932]	maltose ChEBI	+	carbon source
[Ref.: #28932]	mannose ChEBI	+	carbon source
[Ref.: #28932]	nitrate ChEBI	+	reduction
[Ref.: #120574]	nitrate ChEBI	-	reduction
[Ref.: #120574]	nitrite ChEBI	-	reduction
[Ref.: #28932]	ribose ChEBI	+	carbon source
[Ref.: #28932]	salicin ChEBI	+	carbon source
[Ref.: #28932]	sorbitol ChEBI	+	carbon source
[Ref.: #28932]	sucrose ChEBI	+	carbon source
[Ref.: #28932]	trehalose ChEBI	+	carbon source
[Ref.: #28932]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #28932]		indole ChEBI	yes
[Ref.: #120574]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #28932]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120574]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120574]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120574]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120574]	11921	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8290]	Sample type/isolated from	human faeces, rectal swab
[Ref.: #8290]	Geographic location (country and/or sea, region)	Québec, Québec city
[Ref.: #8290]	Country	Canada
[Ref.: #8290]	Country ISO 3 Code	CAN
[Ref.: #8290]	Continent	North America

[Ref.: #60125]	Sample type/isolated from	Human feces
[Ref.: #60125]	Sampling date	2001-10-01
[Ref.: #60125]	Geographic location (country and/or sea, region)	Québec
[Ref.: #60125]	Country	Canada
[Ref.: #60125]	Country ISO 3 Code	CAN
[Ref.: #60125]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human feces
[Ref.: #67770]	Geographic location (country and/or sea, region)	Québec
[Ref.: #67770]	Country	Canada
[Ref.: #67770]	Country ISO 3 Code	CAN
[Ref.: #67770]	Continent	North America

[Ref.: #120574]	Sample type/isolated from	Human, Feces
[Ref.: #120574]	Geographic location (country and/or sea, region)	Quebec
[Ref.: #120574]	Country	Canada
[Ref.: #120574]	Country ISO 3 Code	CAN
[Ref.: #120574]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Rectum
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF564277 (>99% sequence identity) for Enterocloster from Microbeatlas

Aquatic Samples	422
Soil Samples	86
Animal Samples	43046
Plant Samples	93
Total Samples	43647

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8290]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120574]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8290]	Clostridium lavalense strain CCRI-9842 16S ribosomal RNA gene, partial sequence	EF564277	1454	GenBank ENA	460384 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Enterocloster lavalensis KCTC 15153	GCA_003024655	contig	GenBank ENA	460384 tax ID
[Ref.: #66792]	[Clostridium] lavalense strain KCTC 15153	460384.7	wgs	PATRIC	460384 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: [Clostridium] lavalense strain KCTC 15153 PATRIC: 460384.7
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	71.263	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	83.13	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	71.836	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	94.655	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.088	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	63.021	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterocloster lavalensis KCTC 15153 NCBI: GCA_003024655
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	72.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	74.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	69.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	99.3

Availability in culture collections External links

[Ref.: #8290]

Culture collection no.

DSM 19851, CCUG 54291, JCM 14986, NML 03-A-015, CIP 109511, KCTC 15153

[Ref.: #72373]

SI-ID 361149

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium lavalense sp. nov., a glycopeptide-resistant species isolated from human faeces.	Domingo MC, Huletsky A, Boissinot M, Helie MC, Bernal A, Bernard KA, Grayson ML, Picard FJ, Bergeron MG	Int J Syst Evol Microbiol	10.1099/ijs.0.001958-0	2009	*

References

#8290

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19851

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28932

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25371 (see below)

#37748 ; Curators of the CIP;
#60125 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54291

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72373

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID361149.1 )

#120574 Collection of Institut Pasteur ; Curators of the CIP; CIP 109511

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#25371

IJSEM 498 2009 ( DOI 10.1099/ijs.0.001958-0 , PubMed 19244429 )

* These data were automatically processed and therefore are not curated

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[Clostridium] lavalense strain KCTC 15153

Enterocloster lavalensis KCTC 15153

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