Name: Clostridium psychrophilum A-1/C-an/I
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2825

Type strain:

Species: Clostridium psychrophilum

Strain Designation: A-1/C-an/I, H12

Culture col. no.: DSM 14207, ATCC BAA-582

Strain history: <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/I <- H. Hippe {1999}

NCBI tax ID(s): 132926 (species)

SI-ID 97654

DSM 14207, ATCC BAA-582

Section

Clostridium psychrophilum A-1/C-an/I is an anaerobe, spore-forming, psychrophilic bacterium that was isolated from microbial mat sample.

Gram-positive
spore-forming
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium psychrophilum**
	Full Scientific Name (LPSN)	Clostridium psychrophilum Spring et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #5250]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5250]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #5250]

Culture medium growth

[Ref.: #5250]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5250]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5250]			growth	4 °C

[Ref.: #5250]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5250]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.447

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5250]	Sample type/isolated from	microbial mat sample
[Ref.: #5250]	Geographic location (country and/or sea, region)	McMurdo Dry Valley Region, Lake Fryxell
[Ref.: #5250]	Country	Antarctica
[Ref.: #5250]	Country ISO 3 Code	ATA
[Ref.: #5250]	Continent	Australia and Oceania
[Ref.: #5250]	Geographic location	-77.6000°/163.1000°
* marker position based on {}

Isolation sources categories

#Environmental

#Microbial community

#Microbial mat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5250]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5250]	Clostridium aff. estertheticum A-1/C-an/I partial 16S rRNA gene	AJ297443	1433	ENA	132926 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium psychrophilum DSM 14207	GCA_018861705	contig	GenBank	132926 tax ID	*
[Ref.: #66792]	Clostridium psychrophilum strain DSM 14207	132926.3	wgs	PATRIC	132926 tax ID	*

[Ref.: #5250]

GC-content

31.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium psychrophilum strain DSM 14207 PATRIC: 132926.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium psychrophilum strain DSM 14207 PATRIC: 132926.3
[Ref.: #69480]	motile	yes	82.683	no
[Ref.: #69480]	gram-positive	yes	77.563	no
[Ref.: #69480]	anaerobic	yes	99.076	yes
[Ref.: #69480]	halophile	no	95.418	no
[Ref.: #69480]	spore-forming	yes	93.976	no
[Ref.: #69480]	glucose-util	yes	92.967	no
[Ref.: #69480]	aerobic	no	98.471	yes
[Ref.: #69480]	flagellated	yes	66.442	no
[Ref.: #69480]	thermophile	no	84.862	no
[Ref.: #69480]	glucose-ferment	yes	65.679	no

Availability in culture collections External links

[Ref.: #5250]

Culture collection no.

DSM 14207, ATCC BAA-582

[Ref.: #72349]

SI-ID 97654

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.	Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02554-0	2003	*

References

#5250

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14207

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72349

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97654.1 )

* These data were automatically processed and therefore are not curated

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Clostridium psychrophilum strain DSM 14207

Clostridium psychrophilum strain DSM 14207

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