Clostridium psychrophilum (DSM 14207, ATCC BAA-582, A-1/C-an/I)

Name: Clostridium psychrophilum (DSM 14207, ATCC BAA-582, A-1/C-an/I)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2825

Type strain

Strain Designation A-1/C-an/I, H12

Culture col. no. DSM 14207 ATCC BAA-582 A-1/C-an/I H12

NCBI tax ID(s) 132926

Special Collections DSMZ

History <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/I <- H. Hippe; {1999}

Links

Clostridium psychrophilum A-1/C-an/I is an anaerobe, psychrophilic prokaryote that was isolated from microbial mat sample.

anaerobe psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 97654

DSM 14207,ATCC BAA-582

@ref 20215

Last LPSN update 2025-12-16 09:47:24

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium psychrophilum

Full scientific name Clostridium psychrophilum Spring et al. 2003

Morphology

Colony morphology

5250

Incubation period>14 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5250	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5250	positive	growth	4	psychrophilic

Physiology and metabolism

Oxygen tolerance

5250

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Microbial community	#Microbial mat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
5250	microbial mat sample	McMurdo Dry Valley Region, Lake Fryxell	Antarctica	ATA	Australia and Oceania	-77.6	163.1 -77.6/163.1

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5250	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1886170v1 assembly for Clostridium psychrophilum DSM 14207	contig	GCA_018861705	132926.3	8072515979	132926	18.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5250	Clostridium aff. estertheticum A-1/C-an/I partial 16S rRNA gene	AJ297443	1433		132926

GC content

@ref	GC-content (mol%)	Method
5250	31.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium psychrophilum DSM 14207
NCBI: GCA_018861705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.70	no
125439	motility	BacteriaNetⓘ	yes	75.90	no
125439	gram_stain	BacteriaNetⓘ	positive	69.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	83.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium psychrophilum strain DSM 14207
PATRIC: 132926.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.67	no
125438	anaerobic	anaerobicⓘ	yes	87.72	yes
125438	spore-forming	spore-formingⓘ	yes	77.62	no
125438	aerobic	aerobicⓘ	no	96.69	yes
125438	thermophilic	thermophileⓘ	no	85.13	yes
125438	flagellated	motile2+ⓘ	yes	76.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The polar lipids of Clostridium psychrophilum, an anaerobic psychrophile.	Guan Z, Tian B, Perfumo A, Goldfine H.	Biochim Biophys Acta	10.1016/j.bbalip.2013.02.004	2013
Phylogeny	Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.	Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02554-0	2003

References

#5250	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14207
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium psychrophilum (DSM 14207, ATCC BAA-582, A-1/C-an/I)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018861705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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