Name: Clostridium bowmanii A-1/C-an/C1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2824

Type strain:

Species: Clostridium bowmanii

Strain Designation: A-1/C-an/C1, H11

Culture col. no.: DSM 14206, ATCC BAA-581

Strain history: <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/C1 <- H. Hippe {1999}

NCBI tax ID(s): 132925 (species)

SI-ID 87994

DSM 14206, ATCC BAA-581

Section

Clostridium bowmanii A-1/C-an/C1 is an anaerobe, spore-forming, psychrophilic bacterium that was isolated from microbial mat sample.

motile
spore-forming
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium bowmanii**
	Full Scientific Name (LPSN)	Clostridium bowmanii Spring et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.443

[Ref.: #5249]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5249]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)

[Ref.: #5249]

Culture medium growth

[Ref.: #5249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5249]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5249]			growth	15 °C

[Ref.: #5249]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5249]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.808

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5249]	Sample type/isolated from	microbial mat sample
[Ref.: #5249]	Geographic location (country and/or sea, region)	McMurdo Dry Valley Region, Lake Fryxell
[Ref.: #5249]	Country	Antarctica
[Ref.: #5249]	Country ISO 3 Code	ATA
[Ref.: #5249]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Microbial community

#Microbial mat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5249]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5249]	Clostridium bowmanii 16S rRNA gene, type strain DSM 14206, clone 11	AJ506119	1477	ENA	132925 tax ID
[Ref.: #5249]	Clostridium bowmanii 16S rRNA gene, type strain DSM 14206, clone 16	AJ506120	1474	ENA	132925 tax ID
[Ref.: #20218]	Clostridium aff. estertheticum A-1/C-an/C1 partial 16S rRNA gene	AJ297442	1402	ENA	132925 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium bowmanii DSM 14206	GCA_018861315	contig	GenBank	132925 tax ID	*
[Ref.: #66792]	Clostridium bowmanii DSM 14206	GCA_020176155	contig	GenBank	132925 tax ID	*
[Ref.: #66792]	Clostridium bowmanii strain DSM 14206	132925.3	wgs	PATRIC	132925 tax ID	*

[Ref.: #5249]

GC-content

32 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium bowmanii strain DSM 14206 PATRIC: 132925.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium bowmanii strain DSM 14206 PATRIC: 132925.3
[Ref.: #69480]	motile	yes	83.966	no
[Ref.: #69480]	gram-positive	yes	67.566	no
[Ref.: #69480]	anaerobic	yes	98.104	yes
[Ref.: #69480]	halophile	no	91.113	no
[Ref.: #69480]	spore-forming	yes	95.824	no
[Ref.: #69480]	glucose-util	yes	91.625	no
[Ref.: #69480]	aerobic	no	96.93	no
[Ref.: #69480]	flagellated	yes	65.81	no
[Ref.: #69480]	thermophile	no	97.973	yes
[Ref.: #69480]	glucose-ferment	yes	62.212	no

Availability in culture collections External links

[Ref.: #5249]

Culture collection no.

DSM 14206, ATCC BAA-581

[Ref.: #72348]

SI-ID 87994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Clostridium bowmanii DSM 14206(T), Isolated from an Antarctic Microbial Mat.	Palevich FP, Palevich N, Maclean PH, Altermann E, Mills J, Brightwell G	Microbiol Resour Announc	10.1128/MRA.01035-21	2022	*
Phylogeny	Clostridium tagluense sp. nov., a psychrotolerant, anaerobic, spore-forming bacterium from permafrost.	Suetin SV, Shcherbakova VA, Chuvilskaya NA, Rivkina EM, Suzina NE, Lysenko AM, Gilichinsky DA	Int J Syst Evol Microbiol	10.1099/ijs.0.002295-0	2009	*
Phylogeny	Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.	Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02554-0	2003	*

References

#5249

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14206

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72348

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87994.1 )

* These data were automatically processed and therefore are not curated

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Clostridium bowmanii strain DSM 14206

Clostridium bowmanii strain DSM 14206

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