Clostridium lacusfryxellense (DSM 14205, ATCC BAA-580, C/C-an/B1)

Name: Clostridium lacusfryxellense (DSM 14205, ATCC BAA-580, C/C-an/B1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2823

Type strain

Strain Designation C/C-an/B1, H10

Culture col. no. DSM 14205 ATCC BAA-580 C/C-an/B1 H10

NCBI tax ID(s) 205328

Special Collections DSMZ

History DSMZ <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; C/C-an/B1 <- H. Hippe {1999}

Links

Clostridium lacusfryxellense C/C-an/B1 is an anaerobe bacterium that was isolated from microbial mat sample.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 87997

DSM 14205,ATCC BAA-580

@ref 20215

Last LPSN update 2026-05-29 08:25:33

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium lacusfryxellense

Full scientific name Clostridium lacusfryxellense Spring et al. 2003

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5248	WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5248	positive	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5248	anaerobe
125439	facultative anaerobe	97.226

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Microbial community	#Microbial mat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5248	microbial mat sample	McMurdo Dry Valley Region, Lake Fryxell	Antarctica	ATA	Australia and Oceania

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5248	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1886173v1 assembly for Clostridium lacusfryxellense DSM 14205	contig	GCA_018861735	205328.3	3005859930	205328	40.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5248	Clostridium lacusfryxellense 16S rRNA gene, type strain DSM 14205	AJ506118	1418		205328

GC content

@ref	GC-content (mol%)	Method
5248	32.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1886173v1 assembly for Clostridium lacusfryxellense DSM 14205
NCBI: GCA_018861735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.23	no
125439	gram_stain	BacteriaNetⓘ	variable	49.08	no
125439	motility	BacteriaNetⓘ	yes	78.26	no
125439	spore_formation	BacteriaNetⓘ	yes	77.32	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium lacusfryxellense strain DSM 14205
PATRIC: 205328.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.07	no
125438	anaerobic	anaerobicⓘ	yes	87.23	yes
125438	spore-forming	spore-formingⓘ	yes	76.47	no
125438	aerobic	aerobicⓘ	no	97.93	yes
125438	thermophilic	thermophileⓘ	no	94.64	yes
125438	flagellated	motile2+ⓘ	yes	80.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Unraveling the Genotypic and Phenotypic Diversity of the Psychrophilic Clostridium estertheticum Complex, a Meat Spoilage Agent.	Wambui J, Stevens MJA, Cernela N, Stephan R.	Front Microbiol	10.3389/fmicb.2022.856810	2022
Phylogeny	Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.	Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02554-0	2003

References

#5248	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14205
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium lacusfryxellense (DSM 14205, ATCC BAA-580, C/C-an/B1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018861735

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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