Clostridium frigoris (DSM 14204, ATCC BAA-579, D-1/D-an/II)

Name: Clostridium frigoris (DSM 14204, ATCC BAA-579, D-1/D-an/II)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2822

Type strain

Strain Designation D-1/D-an/II, H8

Culture col. no. DSM 14204 ATCC BAA-579 D-1/D-an/II H8

NCBI tax ID(s) 205327

Special Collections DSMZ

History DSMZ <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; D-1/D-an/II <- H. Hippe; {1999}

Links

Clostridium frigoris D-1/D-an/II is an anaerobe bacterium that was isolated from microbial mat sample.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 87995

DSM 14204,ATCC BAA-579

@ref 20215

Last LPSN update 2026-05-29 08:25:33

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium frigoris

Full scientific name Clostridium frigoris Spring et al. 2003

Morphology

Colony morphology

5247

Incubation period8-14 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5247	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339; with strain-specific modifications) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l NaHCO3 2.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5247	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5247	anaerobe
125438	anaerobe	91.317
125439	facultative anaerobe	96.848

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Microbial community	#Microbial mat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5247	microbial mat sample	McMurdo Dry Valley Region, Lake Fryxell	Antarctica	ATA	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence AJ506117 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	5428
Soil Samples	9246
Animal Samples	1548
Plant Samples	2245
Total Samples	18467

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5247	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1886186v1 assembly for Clostridium frigoris DSM 14204	contig	GCA_018861865	205327.3	3005855750	205327	46.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5247	Clostridium frigoris 16S rRNA gene, type strain DSM 14204, clone 5	AJ506116	1477		205327
5247	Clostridium frigoris 16S rRNA gene, type strain DSM 14204, clone 10	AJ506117	1477		205327

GC content

@ref	GC-content (mol%)	Method
5247	31.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1886186v1 assembly for Clostridium frigoris DSM 14204
NCBI: GCA_018861865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.85	no
125439	gram_stain	BacteriaNetⓘ	positive	52.00	no
125439	motility	BacteriaNetⓘ	yes	75.27	no
125439	spore_formation	BacteriaNetⓘ	yes	78.03	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium frigoris strain DSM 14204
PATRIC: 205327.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.37	no
125438	anaerobic	anaerobicⓘ	yes	91.32	yes
125438	spore-forming	spore-formingⓘ	yes	80.61	no
125438	aerobic	aerobicⓘ	no	97.76	yes
125438	thermophilic	thermophileⓘ	no	90.35	no
125438	flagellated	motile2+ⓘ	yes	80.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.	Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02554-0	2003

References

#5247	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14204
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Clostridium frigoris (DSM 14204, ATCC BAA-579, D-1/D-an/II)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018861865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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