Name: Anaerotignum lactatifermentans G17
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2806

Type strain:

Species: Anaerotignum lactatifermentans

Strain Designation: G17

Culture col. no.: DSM 14214, LMG 20954

Strain history: <- P. W. J. J. van der Wielen; G17 <- G. Rovers and P. W. J. J. van der Wielen {1998}

NCBI tax ID(s): 1121323 (strain), 160404 (species)

SI-ID 84993

LMG 20954, DSM 14214

Special Collections

Other strains from Anaerotignum lactatifermentans

Section

Anaerotignum lactatifermentans G17 is an anaerobe, chemoorganotroph, mesophilic bacterium that was isolated from caeca of broiler chicken.

Gram-positive
rod-shaped
anaerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Anaerotignum*
	Species	**Anaerotignum lactatifermentans**
	Full Scientific Name (LPSN)	Anaerotignum lactatifermentans (van der Wielen et al. 2002) Ueki et al. 2017

Synonym

Clostridium lactatifermentans

Information on morphological and physiological properties Morphology

[Ref.: #43524]	Gram stain	positive

[Ref.: #43524]	Cell length	2.8-7.5 µm

[Ref.: #43524]	Cell width	0.6-1.3 µm

[Ref.: #43524]	Cell shape	rod-shaped

[Ref.: #43524]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5253]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #5253]

Culture medium growth

[Ref.: #5253]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5253]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5253]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5253]	Oxygen tolerance	anaerobe
[Ref.: #43524]	Oxygen tolerance	obligate anaerobe

[Ref.: #43524]

Nutrition type

chemoorganotroph

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43524]	ethanol ChEBI	-	assimilation
[Ref.: #43524]	glucose ChEBI	+/-	assimilation
[Ref.: #43524]	L-alanine ChEBI	+	assimilation
[Ref.: #43524]	L-isoleucine ChEBI	+/-	assimilation
[Ref.: #43524]	L-leucine ChEBI	+/-	assimilation
[Ref.: #43524]	L-serine ChEBI	+	assimilation
[Ref.: #43524]	L-threonine ChEBI	+	assimilation
[Ref.: #43524]	L-valine ChEBI	+/-	assimilation
[Ref.: #43524]	xylose ChEBI	+	assimilation

	Metabolite	Production
[Ref.: #43524]	acetate ChEBI	yes
[Ref.: #43524]	butyrate ChEBI	yes
[Ref.: #43524]	isobutyrate ChEBI	yes
[Ref.: #43524]	isovalerate ChEBI	yes
[Ref.: #43524]	propionate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5253]	Sample type/isolated from	caeca of broiler chicken
[Ref.: #5253]	Geographic location (country and/or sea, region)	Leusden
[Ref.: #5253]	Country	Netherlands
[Ref.: #5253]	Country ISO 3 Code	NLD
[Ref.: #5253]	Continent	Europe

[Ref.: #43524]	Sample type/isolated from	chicken caeca
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5253]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5253]	Clostridium lactatifermentans 16S ribosomal RNA gene, partial sequence	AY033434	1497	GenBank ENA	160404 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerotignum lactatifermentans DSM 14214	GCA_900142265	scaffold	GenBank ENA	1121323 tax ID	*
[Ref.: #66792]	[Clostridium] lactatifermentans DSM 14214	1121323.3	wgs	PATRIC	1121323 tax ID	*
[Ref.: #66792]	Anaerotignum lactatifermentans DSM 14214	2585428190	draft	JGI IMG/M	1121323 tax ID	*

[Ref.: #43524]	GC-content	46 mol%	high performance liquid chromatography (HPLC)
[Ref.: #5253]	GC-content	44.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerotignum lactatifermentans DSM 14214 DSM 14214 NCBI: GCA_900142265.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerotignum lactatifermentans DSM 14214 DSM 14214 NCBI: GCA_900142265.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.319	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.716	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.388	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	52.837	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.295	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.113	yes

Availability in culture collections External links

[Ref.: #5253]

Culture collection no.

DSM 14214, LMG 20954

[Ref.: #72332]

SI-ID 84993

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum.	Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002268	2017	*

References

#5253

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14214

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43524

Atsuko Ueki, Kazushi Goto, Yoshimi Ohtaki, Nobuo Kaku, Katsuji Ueki: Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum. IJSEM 67: 4146 - 4153 2017 ( DOI 10.1099/ijsem.0.002268 , PubMed 28905695 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72332

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID84993.1 )

* These data were automatically processed and therefore are not curated

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Anaerotignum lactatifermentans DSM 14214 DSM 14214

Anaerotignum lactatifermentans DSM 14214 DSM 14214

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