Name: Anaerotignum lactatifermentans G17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2806

Type strain:

Species: Anaerotignum lactatifermentans

Strain Designation: G17

Culture col. no.: DSM 14214, LMG 20954

Strain history: <- P. W. J. J. van der Wielen; G17 <- G. Rovers and P. W. J. J. van der Wielen {1998}

NCBI tax ID(s): 1121323 (strain), 160404 (species)

SI-ID 84993

LMG 20954, DSM 14214

Other strains from Anaerotignum lactatifermentans

A. lactatifermentans Cla-CZ-174, DSM 109233

Section

Anaerotignum lactatifermentans G17 is an anaerobe, chemoorganotroph, mesophilic bacterium that was isolated from caeca of broiler chicken.

Gram-negative
rod-shaped
anaerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Anaerotignum*
	Species	**Anaerotignum lactatifermentans**
	Full Scientific Name (LPSN)	Anaerotignum lactatifermentans (van der Wielen et al. 2002) Ueki et al. 2017

Synonym

Clostridium lactatifermentans

Information on morphological and physiological properties Morphology

[Ref.: #43524]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43524]	Cell length	2.8-7.5 µm

[Ref.: #43524]	Cell width	0.6-1.3 µm

[Ref.: #43524]	Cell shape	rod-shaped

[Ref.: #43524]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5253]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #5253]

Culture medium growth

[Ref.: #5253]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5253]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5253]			growth	37 °C

[Ref.: #5253]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5253]	Oxygen tolerance	anaerobe
[Ref.: #43524]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #43524]

Nutrition type

chemoorganotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %97.803

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43524]	ethanol ChEBI	-	assimilation
[Ref.: #43524]	glucose ChEBI	+/-	assimilation
[Ref.: #43524]	L-alanine ChEBI	+	assimilation
[Ref.: #43524]	L-isoleucine ChEBI	+/-	assimilation
[Ref.: #43524]	L-leucine ChEBI	+/-	assimilation
[Ref.: #43524]	L-serine ChEBI	+	assimilation
[Ref.: #43524]	L-threonine ChEBI	+	assimilation
[Ref.: #43524]	L-valine ChEBI	+/-	assimilation
[Ref.: #43524]	xylose ChEBI	+	assimilation

	Metabolite	Production
[Ref.: #43524]	acetate ChEBI	yes
[Ref.: #43524]	butyrate ChEBI	yes
[Ref.: #43524]	isobutyrate ChEBI	yes
[Ref.: #43524]	isovalerate ChEBI	yes
[Ref.: #43524]	propionate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5253]	Sample type/isolated from	caeca of broiler chicken
[Ref.: #5253]	Geographic location (country and/or sea, region)	Leusden
[Ref.: #5253]	Country	Netherlands
[Ref.: #5253]	Country ISO 3 Code	NLD
[Ref.: #5253]	Continent	Europe

[Ref.: #43524]	Sample type/isolated from	chicken caeca
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5253]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5253]	Clostridium lactatifermentans 16S ribosomal RNA gene, partial sequence	AY033434	1497	ENA	160404 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerotignum lactatifermentans DSM 14214	GCA_900142265	scaffold	GenBank	1121323 tax ID	*
[Ref.: #66792]	[Clostridium] lactatifermentans DSM 14214	1121323.3	wgs	PATRIC	1121323 tax ID	*
[Ref.: #66792]	Anaerotignum lactatifermentans DSM 14214	2585428190	draft	JGI IMG/M	1121323 tax ID	*

[Ref.: #43524]	GC-content	46 mol%	high performance liquid chromatography (HPLC)
[Ref.: #5253]	GC-content	44.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerotignum lactatifermentans DSM 14214 DSM 14214 NCBI: GCA_900142265.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerotignum lactatifermentans DSM 14214 DSM 14214 NCBI: GCA_900142265.1
[Ref.: #69480]	motile	no	90.747	yes
[Ref.: #69480]	flagellated	no	94.481	yes
[Ref.: #69480]	gram-positive	yes	82.625	yes
[Ref.: #69480]	anaerobic	yes	99.59	no
[Ref.: #69480]	aerobic	no	98.764	yes
[Ref.: #69480]	halophile	no	74.511	no
[Ref.: #69480]	spore-forming	no	66.11	no
[Ref.: #69480]	thermophile	no	98.094	yes
[Ref.: #69480]	glucose-util	yes	79.32	no
[Ref.: #69480]	glucose-ferment	yes	54.649	no

Availability in culture collections External links

[Ref.: #5253]

Culture collection no.

DSM 14214, LMG 20954

[Ref.: #72332]

SI-ID 84993

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum.	Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002268	2017	*

References

#5253

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14214

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43524

Atsuko Ueki, Kazushi Goto, Yoshimi Ohtaki, Nobuo Kaku, Katsuji Ueki: Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum. IJSEM 67: 4146 - 4153 2017 ( DOI 10.1099/ijsem.0.002268 , PubMed 28905695 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72332

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID84993.1 )

* These data were automatically processed and therefore are not curated

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Anaerotignum lactatifermentans DSM 14214 DSM 14214

Anaerotignum lactatifermentans DSM 14214 DSM 14214

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