Aeromonas bivalvium (DSM 19111, CECT 7113, LMG 23376)

Name: Aeromonas bivalvium (DSM 19111, CECT 7113, LMG 23376)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 280

Type strain

Strain Designation 868E

Culture col. no. DSM 19111 CECT 7113 LMG 23376 868E CIP 109539

NCBI tax ID(s) 440079

Special Collections DSMZ Literature strains CIP

History DSMZ <- D. Miñana-Galbis; 868E CIP <- 2007, CECT <- 2005, D. Minana Galbis, Barcelona Univ. Barcelona, Spain: strain 868E

Links

Aeromonas bivalvium 868E is a facultative anaerobe, coccus-shaped bacterium that was isolated from cockles .

coccus-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297116
CECT 7113,LMG 23376,DSM 19111,CIP 109539,KCTC 22102

@ref 20215

Last LPSN update 2026-05-29 08:24:59

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Aeromonas

Species Aeromonas bivalvium

Full scientific name Aeromonas bivalvium Miñana-Galbis et al. 2007

BacDive ID Other strains from Aeromonas bivalvium (1) Type strain

281 A. bivalvium 665N, DSM 19112

Morphology

Cell morphology
@ref Gram stain Cell length Cell width Cell shape Motility Flagellum arrangement Confidence
23260 coccus-shaped
23260 negative 0.5-2.0 µm 0.3-1.0 µm rod-shaped monotrichous, polar
116824 negative rod-shaped
125438 90.76
125438 negative 100
125439 negative 97.471

Colony morphology
@ref Type of hemolysis Hemolysis ability Colony size Incubation period Medium used
23260 gamma 0 3-4 mm 2 days TSA

Culture and growth conditions

Culture medium
@ref Name Growth Medium link Composition
7898 NUTRIENT AGAR (DSMZ Medium 1) Medium recipe at MediaDive Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23260 MacConkey Agar
23260 Trypticase Soy Agar (TSA)
39979 MEDIUM 72- for trypto casein soja agar Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116824 CIP Medium 72 Medium recipe at CIP

Culture temp
@ref Growth Type Temperature (°C)
7898 positive growth 28
23260 positive growth 25
23260 positive growth 4
23260 positive growth 37
23260 positive growth 40.5
23260 positive optimum 30-37
39979 positive growth 30

Culture pH
@ref Ability Type PH PH range
23260 positive growth 9.0 alkaliphile
23260 growth 4.5

Physiology and metabolism

Oxygen tolerance
@ref Oxygen tolerance Confidence
116824 facultative anaerobe
125439 obligate anaerobe 98.636

Spore formation
@ref Spore formation Confidence
125439 99.801

Halophily
@ref Salt Growth Tested relation Concentration
23260 NaCl positive growth 3 %
23260 NaCl inconsistent growth 6 %
23260 NaCl growth 7 %

Metabolite utilization
@ref Chebi-ID Metabolite Utilization activity Kind of utilization tested
23260 30089 ChEBI acetate + carbon source
68371 27613 ChEBI amygdalin - builds acid from from API 50CH acid
68368 27613 ChEBI amygdalin - fermentation from API 20E
23260 18305 ChEBI arbutin + builds acid from
23260 18305 ChEBI arbutin + carbon source
23260 18305 ChEBI arbutin + hydrolysis
68371 18305 ChEBI arbutin + builds acid from from API 50CH acid
68368 29016 ChEBI arginine + hydrolysis from API 20E
23260 17057 ChEBI cellobiose + carbon source
68371 17057 ChEBI cellobiose - builds acid from from API 50CH acid
23260 16947 ChEBI citrate + carbon source
68368 16947 ChEBI citrate - assimilation from API 20E
23260 15356 ChEBI cysteine - builds gas from
68371 17108 ChEBI D-arabinose - builds acid from from API 50CH acid
68371 18333 ChEBI D-arabitol - builds acid from from API 50CH acid
23260 15824 ChEBI D-fructose + carbon source
68371 15824 ChEBI D-fructose + builds acid from from API 50CH acid
68371 28847 ChEBI D-fucose - builds acid from from API 50CH acid
23260 12936 ChEBI D-galactose + builds acid from
23260 12936 ChEBI D-galactose + carbon source
68371 12936 ChEBI D-galactose + builds acid from from API 50CH acid
23260 17634 ChEBI D-glucose - builds gas from
23260 17634 ChEBI D-glucose + carbon source
68371 17634 ChEBI D-glucose + builds acid from from API 50CH acid
68368 17634 ChEBI D-glucose + fermentation from API 20E
68371 62318 ChEBI D-lyxose - builds acid from from API 50CH acid
23260 16899 ChEBI D-mannitol + builds acid from
23260 16899 ChEBI D-mannitol + carbon source
68371 16899 ChEBI D-mannitol + builds acid from from API 50CH acid
68368 16899 ChEBI D-mannitol + fermentation from API 20E
23260 16024 ChEBI D-mannose - builds acid from
23260 16024 ChEBI D-mannose - carbon source
68371 16024 ChEBI D-mannose - builds acid from from API 50CH acid
68371 16988 ChEBI D-ribose + builds acid from from API 50CH acid
68371 17924 ChEBI D-sorbitol - builds acid from from API 50CH acid
68371 16443 ChEBI D-tagatose - builds acid from from API 50CH acid
23260 16551 ChEBI D-trehalose + builds acid from
23260 16551 ChEBI D-trehalose + carbon source
23260 65327 ChEBI D-xylose - builds acid from
23260 65327 ChEBI D-xylose - carbon source
68371 65327 ChEBI D-xylose - builds acid from from API 50CH acid
23260 23652 ChEBI dextrin + builds acid from
23260 16991 ChEBI dna + hydrolysis
23260 4767 ChEBI elastin - hydrolysis
68371 17113 ChEBI erythritol - builds acid from from API 50CH acid
23260 4853 ChEBI esculin + carbon source
23260 4853 ChEBI esculin + hydrolysis
68371 4853 ChEBI esculin + builds acid from from API 50CH acid
23260 16813 ChEBI galactitol - carbon source
68371 16813 ChEBI galactitol - builds acid from from API 50CH acid
23260 5291 ChEBI gelatin + hydrolysis
68368 5291 ChEBI gelatin + hydrolysis from API 20E
68371 28066 ChEBI gentiobiose - builds acid from from API 50CH acid
68371 24265 ChEBI gluconate + builds acid from from API 50CH acid
23260 17234 ChEBI glucose + fermentation
23260 17234 ChEBI glucose + oxidation
23260 17754 ChEBI glycerol + builds acid from
23260 17754 ChEBI glycerol + carbon source
68371 17754 ChEBI glycerol + builds acid from from API 50CH acid
68371 28087 ChEBI glycogen + builds acid from from API 50CH acid
68371 15443 ChEBI inulin - builds acid from from API 50CH acid
23260 30849 ChEBI L-arabinose + builds acid from
23260 30849 ChEBI L-arabinose + carbon source
68371 30849 ChEBI L-arabinose + builds acid from from API 50CH acid
68368 30849 ChEBI L-arabinose + fermentation from API 20E
68371 18403 ChEBI L-arabitol - builds acid from from API 50CH acid
23260 16467 ChEBI L-arginine + carbon source
68371 18287 ChEBI L-fucose - builds acid from from API 50CH acid
23260 15971 ChEBI L-histidine + carbon source
23260 62345 ChEBI L-rhamnose - builds acid from
23260 62345 ChEBI L-rhamnose - carbon source
68371 62345 ChEBI L-rhamnose - builds acid from from API 50CH acid
68368 62345 ChEBI L-rhamnose - fermentation from API 20E
23260 17266 ChEBI L-sorbose - carbon source
68371 17266 ChEBI L-sorbose - builds acid from from API 50CH acid
68371 65328 ChEBI L-xylose - builds acid from from API 50CH acid
23260 24996 ChEBI lactate + carbon source
23260 17716 ChEBI lactose - builds acid from
23260 17716 ChEBI lactose - carbon source
68371 17716 ChEBI lactose - builds acid from from API 50CH acid
68368 25094 ChEBI lysine + degradation from API 20E
23260 17306 ChEBI maltose + carbon source
68371 17306 ChEBI maltose + builds acid from from API 50CH acid
23260 6731 ChEBI melezitose - carbon source
68371 6731 ChEBI melezitose - builds acid from from API 50CH acid
23260 28053 ChEBI melibiose - builds acid from
23260 28053 ChEBI melibiose - carbon source
68371 28053 ChEBI melibiose - builds acid from from API 50CH acid
68368 28053 ChEBI melibiose - fermentation from API 20E
68371 320061 ChEBI methyl alpha-D-glucopyranoside - builds acid from from API 50CH acid
68371 43943 ChEBI methyl alpha-D-mannoside - builds acid from from API 50CH acid
68371 74863 ChEBI methyl beta-D-xylopyranoside - builds acid from from API 50CH acid
23260 17268 ChEBI myo-inositol - carbon source
68371 17268 ChEBI myo-inositol - builds acid from from API 50CH acid
68368 17268 ChEBI myo-inositol - fermentation from API 20E
23260 506227 ChEBI N-acetylglucosamine + carbon source
68371 59640 ChEBI N-acetylglucosamine + builds acid from from API 50CH acid
23260 17632 ChEBI nitrate + reduction
116824 17632 ChEBI nitrate + reduction
116824 16301 ChEBI nitrite + reduction
23260 O-nitrophenyl-beta-D-galactopyranosid + hydrolysis
68368 18257 ChEBI ornithine - degradation from API 20E
68371 0 ChEBI Potassium 2-ketogluconate - builds acid from from API 50CH acid
68371 0 ChEBI Potassium 5-ketogluconate - builds acid from from API 50CH acid
23260 16634 ChEBI raffinose - builds acid from
23260 16634 ChEBI raffinose - carbon source
68371 16634 ChEBI raffinose - builds acid from from API 50CH acid
23260 15963 ChEBI ribitol - carbon source
68371 15963 ChEBI ribitol - builds acid from from API 50CH acid
23260 17814 ChEBI salicin + builds acid from
23260 17814 ChEBI salicin + carbon source
68371 17814 ChEBI salicin + builds acid from from API 50CH acid
23260 30911 ChEBI sorbitol - builds acid from
23260 30911 ChEBI sorbitol - carbon source
68368 30911 ChEBI sorbitol - fermentation from API 20E
23260 28017 ChEBI starch + carbon source
23260 28017 ChEBI starch + hydrolysis
68371 28017 ChEBI starch + builds acid from from API 50CH acid
23260 17992 ChEBI sucrose + builds acid from
23260 17992 ChEBI sucrose + carbon source
68371 17992 ChEBI sucrose + builds acid from from API 50CH acid
68368 17992 ChEBI sucrose + fermentation from API 20E
23260 16094 ChEBI thiosulfate - builds gas from
68371 27082 ChEBI trehalose + builds acid from from API 50CH acid
23260 27897 ChEBI tryptophan + energy source
68368 27897 ChEBI tryptophan + energy source from API 20E
68371 32528 ChEBI turanose - builds acid from from API 50CH acid
23260 16199 ChEBI urea - hydrolysis
68368 16199 ChEBI urea - hydrolysis from API 20E
23260 15318 ChEBI xanthine - hydrolysis
68371 17151 ChEBI xylitol - builds acid from from API 50CH acid

Antibiotic resistance
@ref ChEBI Group ID Metabolite Is sensitive Sensitivity conc. Is resistant Resistance conc. Is intermediate Intermediate conc.
23260 2637 0 amikacin 30 µg
23260 2676 10 amoxicillin 30 µg
23260 28971 0 ampicillin 10 µg
23260 209807 0 cefoxitin 30 µg
23260 29007 0 ceftriaxone 30 µg
23260 3515 0 cefuroxime 30 µg
23260 100241 0 ciprofloxacin 5 µg
23260 48947 10 clavulanic acid 30 µg
23260 37943 0 colistin 50 µg
23260 48923 0 erythromycin 15 µg
23260 17833 0 gentamicin 10 µg
23260 471744 0 imipenem 10 µg
23260 18208 0 penicillin g 10 µg
23260 8309 0 polymyxin b 300 Unit
23260 17076 0 streptomycin 10 µg
23260 27902 0 tetracycline 30 µg
23260 9587 0 ticarcillin 75 µg
23260 28864 0 tobramycin 10 µg
23260 73908 0 vibriostat 150 µg

Metabolite production
@ref Chebi-ID Metabolite Production
23260 15688 ChEBI acetoin
68368 15688 ChEBI acetoin from API 20E
23260 16136 ChEBI hydrogen sulfide
68368 16136 ChEBI hydrogen sulfide from API 20E
23260 35581 ChEBI indole
116824 35581 ChEBI indole
68368 35581 ChEBI indole from API 20E

Metabolite tests
@ref Chebi-ID Metabolite Voges-proskauer-test Methylred-test Indole test
23260 15688 ChEBI acetoin -
68368 15688 ChEBI acetoin - from API 20E
23260 17234 ChEBI glucose +
23260 35581 ChEBI indole +
68368 35581 ChEBI indole + from API 20E

Enzymes
@ref Value Activity Ec
68382 acid phosphatase + 3.1.3.2 from API zym
68382 alkaline phosphatase + 3.1.3.1 from API zym
68382 alpha-chymotrypsin - 3.4.21.1 from API zym
68382 alpha-fucosidase - 3.2.1.51 from API zym
68382 alpha-galactosidase - 3.2.1.22 from API zym
68382 alpha-glucosidase + 3.2.1.20 from API zym
68382 alpha-mannosidase - 3.2.1.24 from API zym
23260 arginine dihydrolase - 3.5.3.6
68368 arginine dihydrolase + 3.5.3.6 from API 20E
23260 beta-galactosidase + 3.2.1.23
68382 beta-galactosidase + 3.2.1.23 from API zym
68368 beta-galactosidase + 3.2.1.23 from API 20E
68382 beta-glucosidase + 3.2.1.21 from API zym
68382 beta-glucuronidase - 3.2.1.31 from API zym
23260 catalase + 1.11.1.6
116824 catalase + 1.11.1.6
68382 cystine arylamidase - 3.4.11.3 from API zym
23260 cytochrome oxidase + 1.9.3.1
68368 cytochrome oxidase + 1.9.3.1 from API 20E
68382 esterase (C 4) + from API zym
68382 esterase lipase (C 8) + from API zym
68368 gelatinase + from API 20E
68382 leucine arylamidase + 3.4.11.1 from API zym
68382 lipase (C 14) + from API zym
23260 lysine decarboxylase + 4.1.1.18
68368 lysine decarboxylase + 4.1.1.18 from API 20E
68382 N-acetyl-beta-glucosaminidase + 3.2.1.52 from API zym
68382 naphthol-AS-BI-phosphohydrolase - from API zym
23260 ornithine decarboxylase - 4.1.1.17
68368 ornithine decarboxylase - 4.1.1.17 from API 20E
116824 oxidase +
68382 trypsin + 3.4.21.4 from API zym
23260 tryptophan deaminase + 4.1.99.1
68368 tryptophan deaminase - 4.1.99.1 from API 20E
116824 urease - 3.5.1.5
68368 urease - 3.5.1.5 from API 20E
68382 valine arylamidase + from API zym

API 20E

@ref ONPG ADH (Arg) LDC (Lys) ODC CIT H2S productionH2S URE TDA (Trp) IND Acetoin production (Voges Proskauer test)VP GEL GLU MAN INO Sor RHA SAC MEL AMY ARA OX Nitrite productionNO2 Reduction to N2N2 MotilityMOB Growth on MacConkey mediumMAC OF-O OF-F

7898 + + + - - - - - + - + + + - - - + - - + + not determinedn.d. not determinedn.d. not determinedn.d. not determinedn.d. not determinedn.d. not determinedn.d.

API zym

@ref Control Alkaline phosphatase Esterase (C 4) 2-naphtyl caprylateEsterase Lipase (C 8) Lipase (C 14) L-leucyl-2-naphthylamideLeucine arylamidase L-valyl-2-naphthylamideValine arylamidase L-cystyl-2-naphthylamideCystine arylamidase Trypsin alpha- Chymotrypsin Acid phosphatase Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase alpha- Galactosidase beta- Galactosidase beta- Glucuronidase alpha- Glucosidase beta- Glucosidase N-acetyl-beta- glucosaminidase alpha- Mannosidase alpha- Fucosidase

116824 - + + + + + + - + - + - - + - + + + - -

API 50CHac

@ref ControlQ GLY ERY DARA LARA RIB DXYL LXYL ADO MDX GAL GLU FRU MNE SBE RHA DUL INO MAN SOR MDM MDG NAG AMY ARB ESC SAL CEL MAL LAC MEL SAC TRE INU MLZ RAF AMD GLYG XLT GEN TUR LYX TAG DFUC LFUC DARL LARL GNT 2KG 5KG

116824 not determinedn.d. + - - + + - - - - + + + - - - - - + - - - + - + + + - + - - + + - - - + + - - - - - - - - - + - -

Isolation, sampling and environmental information

Isolation source categories
Cat1 Cat2 Cat3
#Host #Invertebrates (Other) #Mollusca

Isolation
@ref Sample type Host species Geographic location Country Country ISO 3 Code Continent
7898 cockles (Cardium sp.) Cardium Barcelona, retail market Spain ESP Europe
116824 Molluscs, bivalve Barcelona Spain ESP Europe

Taxonmaps

69479

Global distribution of 16S sequence DQ504429 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples 24

Soil Samples 0

Animal Samples 12

Plant Samples 3

Total Samples 39

Interaction and safety

Risk assessment
@ref Biosafety level Biosafety level comment
7898 1 Risk group (German classification)
According to TRBA 466
116824 1 Risk group (French classification)
According to TRBA 466

Sequence information

Genome sequences
@ref Description Assembly level INSDC accession BV-BRC accession IMG accession NCBI tax ID Score
66792 PRJEB7023 assembly for Aeromonas bivalvium CECT 7113 scaffold
GCA_000819765

440079.3

2639762879

440079
48.1

Genome browser: GCA_000819765

16S sequences
@ref Description Accession Length Database NCBI tax ID
20218 Aeromonas bivalvium strain CECT7113 isolate TTGE gel band 36 16S ribosomal RNA gene, partial sequence JX453444 151
440079
7898 Aeromonas bivalvium strain 868E 16S ribosomal RNA gene, partial sequence DQ504429 1506

440079

GC content
@ref GC-content (mol%) Method
23260 62.6 high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions
Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: PRJEB7023 assembly for Aeromonas bivalvium CECT 7113
NCBI: GCA_000819765

@ref Trait Model Prediction Confidence in % In training data

125439 oxygen_tolerance BacteriaNetⓘ obligate anaerobe 98.64 no

125439 gram_stain BacteriaNetⓘ negative 97.47 no

125439 motility BacteriaNetⓘ yes 70.14 no

125439 spore_formation BacteriaNetⓘ no 99.80 no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aeromonas bivalvium CECT 7113
NCBI: GCA_000819765.1

@ref Trait Model Prediction Confidence in % In training data

125438 gram-positive gram-positiveⓘ no 100.00 yes

125438 anaerobic anaerobicⓘ no 96.32 yes

125438 aerobic aerobicⓘ no 68.27 no

125438 spore-forming spore-formingⓘ no 89.97 no

125438 thermophilic thermophileⓘ no 100.00 yes

125438 flagellated motile2+ⓘ yes 90.76 no

Literature

Literature
Topic Title Authors Journal DOI Year
Bacterial and fungal gut microbiota of supralittoral talitrid amphipods feeding on brown macroalgae and paper. Nakamura S, Yumioka J, Kachi S, Baba Y, Kawai S. PLoS One 10.1371/journal.pone.0279834 2022
Metabolism Complete Characterization of the O-Antigen from the LPS of Aeromonas bivalvium. Di Guida R, Casillo A, Tomas JM, Merino S, Corsaro MM Int J Mol Sci 10.3390/ijms23031204 2022
Phylogeny Aeromonas bivalvium sp. nov., isolated from bivalve molluscs. Minana-Galbis D, Farfan M, Fuste MC, Loren JG Int J Syst Evol Microbiol 10.1099/ijs.0.64497-0 2007

References

#7898 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19111

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218 Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23260 David Minana-Galbis, Maribel Farfán, M. Carme Fusté, J. Gaspar Lor: Aeromonas bivalvium sp. nov., isolated from bivalve molluscs. IJSEM 57: 582 - 587 2007 ( DOI 10.1099/ijs.0.64497-0 , PubMed 17329789 )

#39979 ; Curators of the CIP;

#66792 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368 Automatically annotated from API 20E .

#68371 Automatically annotated from API 50CH acid .

#68382 Automatically annotated from API zym .

#69479 João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#116824 Collection of Institut Pasteur ; Curators of the CIP; CIP 109539

#125438 Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439 Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#126262 A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23260				coccus-shaped
23260	negative	0.5-2.0 µm	0.3-1.0 µm	rod-shaped	monotrichous, polar
116824	negative			rod-shaped
125438						90.76
125438	negative					100
125439	negative					97.471

@ref	Name	Medium link	Composition
7898	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23260	MacConkey Agar
23260	Trypticase Soy Agar (TSA)
39979	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116824	CIP Medium 72	Medium recipe at CIP

@ref	Growth	Type	Temperature (°C)
7898	positive	growth	28
23260	positive	growth	25
23260	positive	growth	4
23260	positive	growth	37
23260	positive	growth	40.5
23260	positive	optimum	30-37
39979	positive	growth	30

@ref	Salt	Growth	Tested relation	Concentration
23260	NaCl	positive	growth	3 %
23260	NaCl	inconsistent	growth	6 %
23260	NaCl		growth	7 %

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23260	30089 ChEBI	acetate	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
23260	18305 ChEBI	arbutin	+	builds acid from
23260	18305 ChEBI	arbutin	+	carbon source
23260	18305 ChEBI	arbutin	+	hydrolysis
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
23260	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
23260	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
23260	15356 ChEBI	cysteine	-	builds gas from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
23260	15824 ChEBI	D-fructose	+	carbon source
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
23260	12936 ChEBI	D-galactose	+	builds acid from
23260	12936 ChEBI	D-galactose	+	carbon source
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
23260	17634 ChEBI	D-glucose	-	builds gas from
23260	17634 ChEBI	D-glucose	+	carbon source
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
23260	16899 ChEBI	D-mannitol	+	builds acid from
23260	16899 ChEBI	D-mannitol	+	carbon source
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
23260	16024 ChEBI	D-mannose	-	builds acid from
23260	16024 ChEBI	D-mannose	-	carbon source
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23260	16551 ChEBI	D-trehalose	+	builds acid from
23260	16551 ChEBI	D-trehalose	+	carbon source
23260	65327 ChEBI	D-xylose	-	builds acid from
23260	65327 ChEBI	D-xylose	-	carbon source
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
23260	23652 ChEBI	dextrin	+	builds acid from
23260	16991 ChEBI	dna	+	hydrolysis
23260	4767 ChEBI	elastin	-	hydrolysis
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23260	4853 ChEBI	esculin	+	carbon source
23260	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
23260	16813 ChEBI	galactitol	-	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23260	5291 ChEBI	gelatin	+	hydrolysis
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
23260	17234 ChEBI	glucose	+	fermentation
23260	17234 ChEBI	glucose	+	oxidation
23260	17754 ChEBI	glycerol	+	builds acid from
23260	17754 ChEBI	glycerol	+	carbon source
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23260	30849 ChEBI	L-arabinose	+	builds acid from
23260	30849 ChEBI	L-arabinose	+	carbon source
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
23260	16467 ChEBI	L-arginine	+	carbon source
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
23260	15971 ChEBI	L-histidine	+	carbon source
23260	62345 ChEBI	L-rhamnose	-	builds acid from
23260	62345 ChEBI	L-rhamnose	-	carbon source
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
23260	17266 ChEBI	L-sorbose	-	carbon source
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23260	24996 ChEBI	lactate	+	carbon source
23260	17716 ChEBI	lactose	-	builds acid from
23260	17716 ChEBI	lactose	-	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
23260	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23260	6731 ChEBI	melezitose	-	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23260	28053 ChEBI	melibiose	-	builds acid from
23260	28053 ChEBI	melibiose	-	carbon source
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
23260	17268 ChEBI	myo-inositol	-	carbon source
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
23260	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
23260	17632 ChEBI	nitrate	+	reduction
116824	17632 ChEBI	nitrate	+	reduction
116824	16301 ChEBI	nitrite	+	reduction
23260		O-nitrophenyl-beta-D-galactopyranosid	+	hydrolysis
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23260	16634 ChEBI	raffinose	-	builds acid from
23260	16634 ChEBI	raffinose	-	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
23260	15963 ChEBI	ribitol	-	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23260	17814 ChEBI	salicin	+	builds acid from
23260	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
23260	30911 ChEBI	sorbitol	-	builds acid from
23260	30911 ChEBI	sorbitol	-	carbon source
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
23260	28017 ChEBI	starch	+	carbon source
23260	28017 ChEBI	starch	+	hydrolysis
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
23260	17992 ChEBI	sucrose	+	builds acid from
23260	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
23260	16094 ChEBI	thiosulfate	-	builds gas from
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
23260	27897 ChEBI	tryptophan	+	energy source
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
23260	16199 ChEBI	urea	-	hydrolysis
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
23260	15318 ChEBI	xanthine	-	hydrolysis
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

@ref	ChEBI	Group ID	Metabolite	Sensitivity conc.	Resistance conc.	Intermediate conc.
23260	2637	0	amikacin	30 µg
23260	2676	10	amoxicillin		30 µg
23260	28971	0	ampicillin		10 µg
23260	209807	0	cefoxitin	30 µg
23260	29007	0	ceftriaxone	30 µg
23260	3515	0	cefuroxime			30 µg
23260	100241	0	ciprofloxacin	5 µg
23260	48947	10	clavulanic acid		30 µg
23260	37943	0	colistin	50 µg
23260	48923	0	erythromycin		15 µg
23260	17833	0	gentamicin	10 µg
23260	471744	0	imipenem	10 µg
23260	18208	0	penicillin g		10 µg
23260	8309	0	polymyxin b	300 Unit
23260	17076	0	streptomycin			10 µg
23260	27902	0	tetracycline	30 µg
23260	9587	0	ticarcillin	75 µg
23260	28864	0	tobramycin	10 µg
23260	73908	0	vibriostat		150 µg

@ref	Chebi-ID	Metabolite
23260	15688 ChEBI	acetoin
68368	15688 ChEBI	acetoin	from API 20E
23260	16136 ChEBI	hydrogen sulfide
68368	16136 ChEBI	hydrogen sulfide	from API 20E
23260	35581 ChEBI	indole
116824	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
23260	arginine dihydrolase	-	3.5.3.6
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
23260	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
23260	catalase	+	1.11.1.6
116824	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23260	cytochrome oxidase	+	1.9.3.1
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	+		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
23260	lysine decarboxylase	+	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
23260	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116824	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
23260	tryptophan deaminase	+	4.1.99.1
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116824	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
7898	cockles (Cardium sp.)	Cardium	Barcelona, retail market	Spain	ESP	Europe
116824	Molluscs, bivalve		Barcelona	Spain	ESP	Europe

Aquatic Samples	24
Soil Samples	0
Animal Samples	12
Plant Samples	3
Total Samples	39

@ref	Biosafety level	Biosafety level comment
7898	1	Risk group (German classification) According to TRBA 466
116824	1	Risk group (French classification) According to TRBA 466

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Aeromonas bivalvium strain CECT7113 isolate TTGE gel band 36 16S ribosomal RNA gene, partial sequence	JX453444	151		440079
7898	Aeromonas bivalvium strain 868E 16S ribosomal RNA gene, partial sequence	DQ504429	1506		440079

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.64	no
125439	gram_stain	BacteriaNetⓘ	negative	97.47	no
125439	motility	BacteriaNetⓘ	yes	70.14	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	96.32	yes
125438	aerobic	aerobicⓘ	no	68.27	no
125438	spore-forming	spore-formingⓘ	no	89.97	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	90.76	no

Topic	Title	Authors	Journal	DOI	Year
	Bacterial and fungal gut microbiota of supralittoral talitrid amphipods feeding on brown macroalgae and paper.	Nakamura S, Yumioka J, Kachi S, Baba Y, Kawai S.	PLoS One	10.1371/journal.pone.0279834	2022
Metabolism	Complete Characterization of the O-Antigen from the LPS of Aeromonas bivalvium.	Di Guida R, Casillo A, Tomas JM, Merino S, Corsaro MM	Int J Mol Sci	10.3390/ijms23031204	2022
Phylogeny	Aeromonas bivalvium sp. nov., isolated from bivalve molluscs.	Minana-Galbis D, Farfan M, Fuste MC, Loren JG	Int J Syst Evol Microbiol	10.1099/ijs.0.64497-0	2007

#7898	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19111
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23260	David Minana-Galbis, Maribel Farfán, M. Carme Fusté, J. Gaspar Lor: Aeromonas bivalvium sp. nov., isolated from bivalve molluscs. IJSEM 57: 582 - 587 2007 ( DOI 10.1099/ijs.0.64497-0 , PubMed 17329789 )
#39979	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116824	Collection of Institut Pasteur ; Curators of the CIP; CIP 109539
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aeromonas bivalvium (DSM 19111, CECT 7113, LMG 23376)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

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Sequence information

Genome sequences

Genome browser: GCA_000819765

16S sequences

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Genome-based predictions

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