Name: Aeromonas bivalvium 868E
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 280

Type strain:

Species: Aeromonas bivalvium

Strain Designation: 868E

Culture col. no.: DSM 19111, CECT 7113, LMG 23376, CIP 109539

Strain history: CIP <- 2007, CECT <- 2005, D. Minana Galbis, Barcelona Univ. Barcelona, Spain: strain 868E

NCBI tax ID(s): 440079 (species)

SI-ID 297116

CECT 7113, LMG 23376, DSM 19111, CIP 109539, KCTC 22102

Other strains from Aeromonas bivalvium

A. bivalvium 665N, DSM 19112

Section

Aeromonas bivalvium 868E is a facultative anaerobe, mesophilic, coccus-shaped bacterium that was isolated from cockles .

coccus-shaped

facultative anaerobe

mesophilic

16S sequence

Bacteria

genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

Last LPSN update 14-12-2023 (DD-MM-YYYY)

Domain "Bacteria"

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Aeromonas

Species Aeromonas bivalvium

Full Scientific Name (LPSN) Aeromonas bivalvium Miñana-Galbis et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #23260] Gram stain negative

[Ref.: #116824] Gram stain negative

[Ref.: #23260] Cell length 0.5-2.0 µm

[Ref.: #23260] Cell width 0.3-1.0 µm

[Ref.: #23260] Cell shape rod-shaped

[Ref.: #116824] Cell shape rod-shaped

[Ref.: #23260] Cell shape coccus-shaped

[Ref.: #23260] Motility yes

[Ref.: #116824] Motility yes

[Ref.: #23260] Flagellum arrangement monotrichous, polar

[Ref.: #23260] Type of hemolysis gamma

[Ref.: #23260] Colony size 3-4 mm

[Ref.: #23260] Incubation period 2 days

[Ref.: #23260] Cultivation medium used TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7898] Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7898] Culture medium growth

[Ref.: #7898] Culture medium link Medium recipe at MediaDive

[Ref.: #7898] Culture medium composition expand / minimize

Name: NUTRIENT AGAR (DSMZ Medium 1)
Composition:
Agar 15.0 g/l
Peptone 5.0 g/l
Meat extract 3.0 g/l
Distilled water

[Ref.: #23260] Culture medium

MacConkey Agar

[Ref.: #23260] Culture medium growth

[Ref.: #23260] Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #23260] Culture medium growth

[Ref.: #39979] Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #39979] Culture medium growth

[Ref.: #39979] Culture medium composition expand / minimize

Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

[Ref.: #116824] Culture medium

CIP Medium 72

[Ref.: #116824] Culture medium growth

[Ref.: #116824] Culture medium link Medium recipe provided by DSMZ

Temperatures Kind of temperature Temperature

[Ref.: #7898] growth 28 °C

[Ref.: #23260] growth 25 °C

[Ref.: #23260] growth 4 °C

[Ref.: #23260] growth 37 °C

[Ref.: #23260] growth 40.5 °C

[Ref.: #23260] optimum 30-37 °C

[Ref.: #39979] growth 30 °C

[Ref.: #7898] Temperature range mesophilic

[Ref.: #23260] Temperature range mesophilic

[Ref.: #23260] Temperature range psychrophilic

[Ref.: #23260] Temperature range mesophilic

[Ref.: #23260] Temperature range thermophilic

[Ref.: #23260] Temperature range mesophilic

[Ref.: #39979] Temperature range mesophilic

pH Kind of pH pH

[Ref.: #23260] growth 9.0

[Ref.: #23260] no growth 4.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116824] Oxygen tolerance facultative anaerobe

Halophily Salt Tested relation Salt conc.

[Ref.: #23260] NaCl growth 3 %

[Ref.: #23260] NaCl inconsistent growth 6 %

[Ref.: #23260] NaCl no growth 7 %

Metabolite utilization Metabolite Utilization activity Kind of utilization tested

[Ref.: #23260] acetate ChEBI + carbon source

[Ref.: #68371] amygdalin ChEBI - builds acid from * from API 50CH acid

[Ref.: #68368] amygdalin ChEBI - fermentation * from API 20E

[Ref.: #23260] arbutin ChEBI + builds acid from

[Ref.: #23260] arbutin ChEBI + carbon source

[Ref.: #23260] arbutin ChEBI + hydrolysis

[Ref.: #68371] arbutin ChEBI + builds acid from * from API 50CH acid

[Ref.: #68368] arginine ChEBI + hydrolysis * from API 20E

[Ref.: #23260] cellobiose ChEBI + carbon source

[Ref.: #68371] cellobiose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] citrate ChEBI + carbon source

[Ref.: #68368] citrate ChEBI - assimilation * from API 20E

[Ref.: #23260] cysteine ChEBI - builds gas from

[Ref.: #68371] D-arabinose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] D-arabitol ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] D-fructose ChEBI + carbon source

[Ref.: #68371] D-fructose ChEBI + builds acid from * from API 50CH acid

[Ref.: #68371] D-fucose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] D-galactose ChEBI + builds acid from

[Ref.: #23260] D-galactose ChEBI + carbon source

[Ref.: #68371] D-galactose ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] D-glucose ChEBI - builds gas from

[Ref.: #23260] D-glucose ChEBI + carbon source

[Ref.: #68371] D-glucose ChEBI + builds acid from * from API 50CH acid

[Ref.: #68368] D-glucose ChEBI + fermentation * from API 20E

[Ref.: #68371] D-lyxose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] D-mannitol ChEBI + builds acid from

[Ref.: #23260] D-mannitol ChEBI + carbon source

[Ref.: #68371] D-mannitol ChEBI + builds acid from * from API 50CH acid

[Ref.: #68368] D-mannitol ChEBI + fermentation * from API 20E

[Ref.: #23260] D-mannose ChEBI - builds acid from

[Ref.: #23260] D-mannose ChEBI - carbon source

[Ref.: #68371] D-mannose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] D-ribose ChEBI + builds acid from * from API 50CH acid

[Ref.: #68371] D-sorbitol ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] D-tagatose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] D-trehalose ChEBI + builds acid from

[Ref.: #23260] D-trehalose ChEBI + carbon source

[Ref.: #23260] D-xylose ChEBI - builds acid from

[Ref.: #23260] D-xylose ChEBI - carbon source

[Ref.: #68371] D-xylose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] dextrin ChEBI + builds acid from

[Ref.: #23260] dna ChEBI + hydrolysis

[Ref.: #23260] elastin ChEBI - hydrolysis

[Ref.: #68371] erythritol ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] esculin ChEBI + carbon source

[Ref.: #23260] esculin ChEBI + hydrolysis

[Ref.: #68371] esculin ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] galactitol ChEBI - carbon source

[Ref.: #68371] galactitol ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] gelatin ChEBI + hydrolysis

[Ref.: #68368] gelatin ChEBI + hydrolysis * from API 20E

[Ref.: #68371] gentiobiose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] gluconate ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] glucose ChEBI + fermentation

[Ref.: #23260] glucose ChEBI + oxidation

[Ref.: #23260] glycerol ChEBI + builds acid from

[Ref.: #23260] glycerol ChEBI + carbon source

[Ref.: #68371] glycerol ChEBI + builds acid from * from API 50CH acid

[Ref.: #68371] glycogen ChEBI + builds acid from * from API 50CH acid

[Ref.: #68371] inulin ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] L-arabinose ChEBI + builds acid from

[Ref.: #23260] L-arabinose ChEBI + carbon source

[Ref.: #68371] L-arabinose ChEBI + builds acid from * from API 50CH acid

[Ref.: #68368] L-arabinose ChEBI + fermentation * from API 20E

[Ref.: #68371] L-arabitol ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] L-arginine ChEBI + carbon source

[Ref.: #68371] L-fucose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] L-histidine ChEBI + carbon source

[Ref.: #23260] L-rhamnose ChEBI - builds acid from

[Ref.: #23260] L-rhamnose ChEBI - carbon source

[Ref.: #68371] L-rhamnose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68368] L-rhamnose ChEBI - fermentation * from API 20E

[Ref.: #23260] L-sorbose ChEBI - carbon source

[Ref.: #68371] L-sorbose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] L-xylose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] lactate ChEBI + carbon source

[Ref.: #23260] lactose ChEBI - builds acid from

[Ref.: #23260] lactose ChEBI - carbon source

[Ref.: #68371] lactose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68368] lysine ChEBI + degradation * from API 20E

[Ref.: #23260] maltose ChEBI + carbon source

[Ref.: #68371] maltose ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] melezitose ChEBI - carbon source

[Ref.: #68371] melezitose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] melibiose ChEBI - builds acid from

[Ref.: #23260] melibiose ChEBI - carbon source

[Ref.: #68371] melibiose ChEBI - builds acid from * from API 50CH acid

[Ref.: #68368] melibiose ChEBI - fermentation * from API 20E

[Ref.: #68371] methyl alpha-D-glucopyranoside ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] methyl alpha-D-mannoside ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] methyl beta-D-xylopyranoside ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] myo-inositol ChEBI - carbon source

[Ref.: #68371] myo-inositol ChEBI - builds acid from * from API 50CH acid

[Ref.: #68368] myo-inositol ChEBI - fermentation * from API 20E

[Ref.: #23260] N-acetylglucosamine ChEBI + carbon source

[Ref.: #68371] N-acetylglucosamine ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] nitrate ChEBI + reduction

[Ref.: #116824] nitrate ChEBI + reduction

[Ref.: #116824] nitrite ChEBI + reduction

[Ref.: #23260] O-nitrophenyl-beta-D-galactopyranosid + hydrolysis

[Ref.: #68368] ornithine ChEBI - degradation * from API 20E

[Ref.: #68371] Potassium 2-ketogluconate ChEBI - builds acid from * from API 50CH acid

[Ref.: #68371] Potassium 5-ketogluconate ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] raffinose ChEBI - builds acid from

[Ref.: #23260] raffinose ChEBI - carbon source

[Ref.: #68371] raffinose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] ribitol ChEBI - carbon source

[Ref.: #68371] ribitol ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] salicin ChEBI + builds acid from

[Ref.: #23260] salicin ChEBI + carbon source

[Ref.: #68371] salicin ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] sorbitol ChEBI - builds acid from

[Ref.: #23260] sorbitol ChEBI - carbon source

[Ref.: #68368] sorbitol ChEBI - fermentation * from API 20E

[Ref.: #23260] starch ChEBI + carbon source

[Ref.: #23260] starch ChEBI + hydrolysis

[Ref.: #68371] starch ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] sucrose ChEBI + builds acid from

[Ref.: #23260] sucrose ChEBI + carbon source

[Ref.: #68371] sucrose ChEBI + builds acid from * from API 50CH acid

[Ref.: #68368] sucrose ChEBI + fermentation * from API 20E

[Ref.: #23260] thiosulfate ChEBI - builds gas from

[Ref.: #68371] trehalose ChEBI + builds acid from * from API 50CH acid

[Ref.: #23260] tryptophan ChEBI + energy source

[Ref.: #68368] tryptophan ChEBI + energy source * from API 20E

[Ref.: #68371] turanose ChEBI - builds acid from * from API 50CH acid

[Ref.: #23260] urea ChEBI - hydrolysis

[Ref.: #68368] urea ChEBI - hydrolysis * from API 20E

[Ref.: #23260] xanthine ChEBI - hydrolysis

[Ref.: #68371] xylitol ChEBI - builds acid from * from API 50CH acid

Only first 10 entries are displayed. Click here to see all.

Antibiotica Metabolite Antibiotic sensitivity Concentration Antibiotic intermediate Concentration Antibiotic resistance Concentration

[Ref.: #23260] amikacin ChEBI yes 30 µg

[Ref.: #23260] ampicillin ChEBI yes 10 µg

[Ref.: #23260] cefoxitin ChEBI yes 30 µg

[Ref.: #23260] ceftriaxone ChEBI yes 30 µg

[Ref.: #23260] cefuroxime ChEBI yes 30 µg

[Ref.: #23260] ciprofloxacin ChEBI yes 5 µg

[Ref.: #23260] colistin ChEBI yes 50 µg

[Ref.: #23260] erythromycin ChEBI yes 15 µg

[Ref.: #23260] gentamicin ChEBI yes 10 µg

[Ref.: #23260] imipenem ChEBI yes 10 µg

[Ref.: #23260] penicillin g ChEBI yes 10 µg

[Ref.: #23260] polymyxin b ChEBI yes 300 Unit

[Ref.: #23260] streptomycin ChEBI yes 10 µg

[Ref.: #23260] tetracycline ChEBI yes 30 µg

[Ref.: #23260] ticarcillin ChEBI yes 75 µg

[Ref.: #23260] tobramycin ChEBI yes 10 µg

[Ref.: #23260] vibriostat ChEBI yes 150 µg

Only first 10 entries are displayed. Click here to see all.

Antibiotica Group ID of combined antibiotics Metabolite Antibiotic resistance Concentration

[Ref.: #23260] 10 amoxicillin ChEBI yes 30 µg

[Ref.: #23260] 10 clavulanic acid ChEBI yes 30 µg

Metabolite production Metabolite Production

[Ref.: #23260] acetoin ChEBI no

[Ref.: #23260] hydrogen sulfide ChEBI no

[Ref.: #23260] indole ChEBI yes

[Ref.: #116824] indole ChEBI yes

[Ref.: #68368] acetoin ChEBI no * from API 20E

[Ref.: #68368] hydrogen sulfide ChEBI no * from API 20E

[Ref.: #68368] indole ChEBI yes * from API 20E

Physiological tests Metabolite Voges-Proskauer-test Methylred-test Indole test

[Ref.: #23260] acetoin ChEBI -

[Ref.: #23260] glucose ChEBI +

[Ref.: #23260] indole ChEBI +

[Ref.: #68368] acetoin ChEBI - * from API 20E

[Ref.: #68368] indole ChEBI + * from API 20E

Enzymes Enzyme Enzyme activity EC number

[Ref.: #68382] acid phosphatase + 3.1.3.2 * from API zym

[Ref.: #68382] alkaline phosphatase + 3.1.3.1 * from API zym

[Ref.: #68382] alpha-chymotrypsin - 3.4.21.1 * from API zym

[Ref.: #68382] alpha-fucosidase - 3.2.1.51 * from API zym

[Ref.: #68382] alpha-galactosidase - 3.2.1.22 * from API zym

[Ref.: #68382] alpha-glucosidase + 3.2.1.20 * from API zym

[Ref.: #68382] alpha-mannosidase - 3.2.1.24 * from API zym

[Ref.: #23260] arginine dihydrolase - 3.5.3.6

[Ref.: #68368] arginine dihydrolase + 3.5.3.6 * from API 20E

[Ref.: #23260] beta-galactosidase + 3.2.1.23

[Ref.: #68382] beta-galactosidase + 3.2.1.23 * from API zym, API 20E

[Ref.: #68382] beta-glucosidase + 3.2.1.21 * from API zym

[Ref.: #68382] beta-glucuronidase - 3.2.1.31 * from API zym

[Ref.: #23260] catalase + 1.11.1.6

[Ref.: #116824] catalase + 1.11.1.6

[Ref.: #68382] cystine arylamidase - 3.4.11.3 * from API zym

[Ref.: #23260] cytochrome oxidase + 1.9.3.1

[Ref.: #68368] cytochrome oxidase + 1.9.3.1 * from API 20E

[Ref.: #68382] esterase (C 4) + * from API zym

[Ref.: #68382] esterase lipase (C 8) + * from API zym

[Ref.: #68368] gelatinase + * from API 20E

[Ref.: #68382] leucine arylamidase + 3.4.11.1 * from API zym

[Ref.: #68382] lipase (C 14) + * from API zym

[Ref.: #23260] lysine decarboxylase + 4.1.1.18

[Ref.: #68368] lysine decarboxylase + 4.1.1.18 * from API 20E

[Ref.: #68382] N-acetyl-beta-glucosaminidase + 3.2.1.52 * from API zym

[Ref.: #68382] naphthol-AS-BI-phosphohydrolase - * from API zym

[Ref.: #23260] ornithine decarboxylase - 4.1.1.17

[Ref.: #68368] ornithine decarboxylase - 4.1.1.17 * from API 20E

[Ref.: #116824] oxidase +

[Ref.: #68382] trypsin + 3.4.21.4 * from API zym

[Ref.: #23260] tryptophan deaminase + 4.1.99.1

[Ref.: #68368] tryptophan deaminase - 4.1.99.1 * from API 20E

[Ref.: #116824] urease - 3.5.1.5

[Ref.: #68368] urease - 3.5.1.5 * from API 20E

[Ref.: #68382] valine arylamidase + * from API zym

Only first 10 entries are displayed. Click here to see all.

API® 20E: Note that the displayed test results represent raw data and therefore may deviate!

API ID beta-GalactosidaseONPG Arginine dihydrolaseADH (Arg) Lysine decarboxylaseLDC (Lys) Ornithine decarboxylaseODC Citrate utilizationCIT H2S productionH2S Urease/urea hydrolysisURE Tryptophan deaminaseTDA (Trp) Indole productionIND Acetoin production (Voges Proskauer test)VP Gelatinase/gelatin hydrolysisGEL Fermentation/oxidation of D-glucoseGLU Fermentation/oxidation of D-mannitolMAN Fermentation/oxidation of inositolINO Fermentation/oxidation of sorbitolSor Fermentation/oxidation of L-rhamnoseRHA Fermentation/oxidation of sucroseSAC Fermentation/oxidation of melibioseMEL Fermentation/oxidation of amygdalinAMY Fermentation/oxidation of L-arabinoseARA Cytochrome oxidaseOX Nitrite productionNO2 Reduction to N2N2 MotilityMOB Growth on MacConkey mediumMAC Oxidative catabolisation of D-glucoseOF-O Fermentation of D-glucoseOF-F

[Ref.: #7898] 16801 + + + - - - - - + - + + + - - - + - - + + not determinedn.d. not determinedn.d. not determinedn.d. not determinedn.d. not determinedn.d. not determinedn.d.

API® 50CH acid: Note that the displayed test results represent raw data and therefore may deviate!

API ID ControlQ Acid from glycerolGLY Acid from erythritolERY Acid from D-arabinoseDARA Acid from L-arabinoseLARA Acid from D-riboseRIB Acid from D-xyloseDXYL Acid from L-xyloseLXYL Acid from D-adonitolADO Acid from methyl beta-D-xylopyranosideMDX Acid from D-galactoseGAL Acid from D-glucoseGLU Acid from D-fructoseFRU Acid from D-mannoseMNE Acid from L-sorboseSBE Acid from L-rhamnoseRHA Acid from dulcitolDUL Acid from inositolINO Acid from D-mannitolMAN Acid from D-sorbitolSOR Acid from methyl alpha-D-mannopyranosideMDM Acid from methyl alpha-D-glucopyranosideMDG Acid from N-acetyl-glucosamineNAG Acid from amygdalinAMY Acid from arbutinARB Acid from esculinESC Acid from salicinSAL Acid from cellobioseCEL Acid from maltoseMAL Acid from lactoseLAC Acid from melibioseMEL Acid from sucroseSAC Acid from trehaloseTRE Acid from inulinINU Acid from melezitoseMLZ Acid from raffinoseRAF Acid from starchAMD Acid from glycogenGLYG Acid from xylitolXLT Acid from gentiobioseGEN Acid from turanoseTUR Acid from D-lyxoseLYX Acid from D-tagatoseTAG Acid from D-fucoseDFUC Acid from L-fucoseLFUC Acid from D-arabitolDARL Acid from L-arabitolLARL Acid from gluconateGNT Acid from 2-Ketogluconate2KG Acid from 5-Ketogluconate5KG

[Ref.: #116824] 11585 not determinedn.d. + - - + + - - - - + + + - - - - - + - - - + - + + + - + - - + + - - - + + - - - - - - - - - + - -

API® zym: Note that the displayed test results represent raw data and therefore may deviate!

API ID Control 2-naphthyl phosphateAlkaline phosphatase 2-naphthyl butyrateEsterase (C 4) 2-naphtyl caprylateEsterase Lipase (C 8) 2-naphthyl myristateLipase (C 14) L-leucyl-2-naphthylamideLeucine arylamidase L-valyl-2-naphthylamideValine arylamidase L-cystyl-2-naphthylamideCystine arylamidase N-benzoyl-DL-arginine-2-naphthylamideTrypsin N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin 2-naphthyl phosphateAcid phosphatase Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase 6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase 2-naphthyl-betaD-galactpyranosidebeta- Galactosidase Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase 2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase 6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase 1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase 6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase 2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase

[Ref.: #116824] 11940 - + + + + + + - + - + - - + - + + + - -

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7898] Sample type/isolated from cockles (Cardium sp.)

[Ref.: #7898] Host species Cardium

[Ref.: #7898] Geographic location (country and/or sea, region) Barcelona, retail market

[Ref.: #7898] Country Spain

[Ref.: #7898] Country ISO 3 Code ESP

[Ref.: #7898] Continent Europe

[Ref.: #116824] Sample type/isolated from Molluscs, bivalve

[Ref.: #116824] Geographic location (country and/or sea, region) Barcelona

[Ref.: #116824] Country Spain

[Ref.: #116824] Country ISO 3 Code ESP

[Ref.: #116824] Continent Europe

* marker position based on {}

Isolation sources categories

#Host #Invertebrates (Other) #Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ504429 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples 24

Soil Samples

Animal Samples 12

Plant Samples 3

Total Samples 39

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7898] Biosafety level 1 Risk group (German classification)
According to TRBA 466

[Ref.: #116824] Biosafety level 1 Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Sequence accession description Seq. accession number Sequence length (bp) Sequence database Associated NCBI tax ID

[Ref.: #7898] Aeromonas bivalvium strain 868E 16S ribosomal RNA gene, partial sequence DQ504429 1506
ENA
440079 tax ID

[Ref.: #20218] Aeromonas bivalvium strain CECT7113 isolate TTGE gel band 36 16S ribosomal RNA gene, partial sequence JX453444 151
ENA
440079 tax ID *

Genome sequence information:

Sequence accession description Seq. accession number Assembly level Sequence database Associated NCBI tax ID

[Ref.: #66792] Aeromonas bivalvium CECT 7113 GCA_000819765 scaffold
GenBank
440079 tax ID *

[Ref.: #66792] Aeromonas bivalvium CECT 7113 440079.3 wgs
PATRIC
440079 tax ID *

[Ref.: #66792] Aeromonas bivalvium CECT 7113 2639762879 draft
JGI IMG/M
440079 tax ID *

[Ref.: #23260] GC-content 62.6 mol% high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

Predictions from Diaspora project based on:
Aeromonas bivalvium CECT 7113
NCBI: GCA_000819765.1

Trait Prediction Confidence in % In training data

[Ref.: #69480] motile yes 90.092 yes

[Ref.: #69480] flagellated yes 93.56 yes

[Ref.: #69480] gram-positive no 98.904 yes

[Ref.: #69480] anaerobic no 98.101 no

[Ref.: #69480] aerobic yes 92.927 no

[Ref.: #69480] halophile no 84.607 no

[Ref.: #69480] spore-forming no 95.552 no

[Ref.: #69480] glucose-util yes 88.413 no

[Ref.: #69480] thermophile no 99.576 no

[Ref.: #69480] glucose-ferment yes 89.287 yes

Availability in culture collections External links

[Ref.: #7898] Culture collection no. DSM 19111, CECT 7113, LMG 23376, CIP 109539

[Ref.: #69962] SI-ID 297116 *

Literature:

Topic Title Authors Journal DOI Year

Metabolism Complete Characterization of the O-Antigen from the LPS of Aeromonas bivalvium. Di Guida R, Casillo A, Tomas JM, Merino S, Corsaro MM Int J Mol Sci 10.3390/ijms23031204 2022 *

Phylogeny Aeromonas bivalvium sp. nov., isolated from bivalve molluscs. Minana-Galbis D, Farfan M, Fuste MC, Loren JG Int J Syst Evol Microbiol 10.1099/ijs.0.64497-0 2007 *

References

#7898 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19111

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218 Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23260 David Minana-Galbis, Maribel Farfán, M. Carme Fusté, J. Gaspar Lor: Aeromonas bivalvium sp. nov., isolated from bivalve molluscs. IJSEM 57: 582 - 587 2007 ( DOI 10.1099/ijs.0.64497-0 , PubMed 17329789 )

#39979 ; Curators of the CIP;

#66792 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368 Automatically annotated from API 20E .

#68371 Automatically annotated from API 50CH acid .

#68382 Automatically annotated from API zym .

#69479 João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69962 Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297116.1 )

#116824 Collection of Institut Pasteur ; Curators of the CIP; CIP 109539

* These data were automatically processed and therefore are not curated

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