Clostridium aminophilum (DSM 10710, ATCC 49906, VPI 14602)

Name: Clostridium aminophilum (DSM 10710, ATCC 49906, VPI 14602)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2787

Type strain

Strain Designation F

Culture col. no. DSM 10710 ATCC 49906 VPI 14602 F

NCBI tax ID(s) 1121296 1526

Special Collections DSMZ

History DSMZ <- ATCC <- J.B. Russell, strain F

Links

Clostridium aminophilum F is an anaerobe bacterium that was isolated from bovine rumen.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42746

ATCC 49906,DSM 10710,NRRL B-23502

@ref 20215

Last LPSN update 2026-05-29 08:25:33

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium aminophilum

Full scientific name Clostridium aminophilum Paster et al. 1993

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4049	RCM MEDIUM (WITH CASAMINO ACIDS) (DSMZ Medium 634a)		Medium recipe at MediaDive	Name: RCM MEDIUM (with Casamino acids) (DSMZ Medium 634a) Composition: dehydrated RCM medium 38.0 g/l Casamino acids 15.0 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4049	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4049	anaerobe
125439	facultative anaerobe	98.093

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	acetoin degradation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	90.91	20 of 22
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	pentose phosphate pathway	81.82	9 of 11
66794	glycine betaine biosynthesis	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	histidine metabolism	79.31	23 of 29
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	glutamate and glutamine metabolism	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	vitamin B12 metabolism	70.59	24 of 34
66794	leucine metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	purine metabolism	68.09	64 of 94
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	formaldehyde oxidation	66.67	2 of 3
66794	citric acid cycle	64.29	9 of 14
66794	degradation of sugar alcohols	62.5	10 of 16
66794	cellulose degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	tryptophan metabolism	57.89	22 of 38
66794	oxidative phosphorylation	57.14	52 of 91
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	vitamin B6 metabolism	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	non-pathway related	52.63	20 of 38
66794	lysine metabolism	52.38	22 of 42
66794	polyamine pathway	52.17	12 of 23
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ketogluconate metabolism	50	4 of 8
66794	selenocysteine biosynthesis	50	3 of 6
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	toluene degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	sulfopterin metabolism	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	methionine metabolism	50	13 of 26
66794	tyrosine metabolism	50	7 of 14
66794	lipid metabolism	48.39	15 of 31
66794	arginine metabolism	45.83	11 of 24
66794	proline metabolism	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	molybdenum cofactor biosynthesis	44.44	4 of 9
66794	heme metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	myo-inositol biosynthesis	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	d-xylose degradation	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	degradation of pentoses	35.71	10 of 28
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sulfate reduction	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	androgen and estrogen metabolism	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4049	bovine rumen	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence L04165 (>99% sequence identity) for [Clostridium] aminophilum subclade from Microbeatlas

Aquatic Samples	31
Soil Samples	41
Animal Samples	6706
Plant Samples	230
Total Samples	7008

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4049	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM71182v1 assembly for [Clostridium] aminophilum DSM 10710	scaffold	GCA_000711825	1121296.3	2565956525	1121296	70.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4049	Clostridium aminophilum 16S ribosomal RNA gene, complete sequence	L04165	1477		1526

GC content

@ref	GC-content (mol%)	Method
4049	52.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM71182v1 assembly for [Clostridium] aminophilum DSM 10710
BV-BRC: 1121296.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.09	no
125439	gram_stain	BacteriaNetⓘ	variable	58.46	no
125439	motility	BacteriaNetⓘ	yes	81.12	no
125439	spore_formation	BacteriaNetⓘ	yes	74.01	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: [Clostridium] aminophilum DSM 10710 DSM 10710
NCBI: GCA_000711825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.70	no
125438	anaerobic	anaerobicⓘ	yes	89.68	yes
125438	aerobic	aerobicⓘ	no	98.64	yes
125438	spore-forming	spore-formingⓘ	no	54.36	no
125438	thermophilic	thermophileⓘ	no	88.95	no
125438	flagellated	motile2+ⓘ	yes	65.56	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Antimicrobial effects of cannabidiol on select agriculturally important Clostridia.	Lakes JE, Ferrell JL, Berhow MA, Flythe MD.	Anaerobe	10.1016/j.anaerobe.2024.102843	2024
	Effects of dietary rumen undegradable protein:rumen degradable protein ratio on nitrogen metabolism in Hanwoo steers.	Kim SY, Bharanidharan R, Im S, Kim KH, Oh J, Kim HJ, Lee J, Ranaweera KKTN, Jeong JW, Oh JS, Lee SH, Baik M.	Anim Biosci	10.5713/ab.24.0592	2025
	Potential modulating effects of Allium mongolicum regel ethanol extract on rumen fermentation and biohydrogenation bacteria of dairy cows in vitro.	Wang X, Bai C, Khas Erdene, Umair AM, Cao Q, Ao C, Jiang L.	Front Microbiol	10.3389/fmicb.2023.1272691	2023
	Interactions between Entodinium caudatum and an amino acid-fermenting bacterial consortium: fermentation characteristics and protozoal population in vitro.	Park T, Yu Z.	J Anim Sci Technol	10.5187/jast.2022.e111	2023
	Comparison of rumen contents' characteristics in Nguni and Bonsmara cows raised under two different grazing systems.	Kayima D, Slayi M, Jaja IF, Mapiye C, Dzama K.	J Adv Vet Anim Res	10.5455/javar.2024.k783	2024
	Insights into Effects of Combined Capric and Lauric Acid on Rumen Bacterial Composition	Vadronova M, Stovicek A, Vyborna A, Tyrolova Y, Ticha D, Joch M.	Microorganisms		2024
	Isolation and Characterization of Effective Bacteria That Reduce Ammonia Emission from Livestock Manure.	Kim SI, Heo W, Lee SJ, Kim YJ.	Microorganisms	10.3390/microorganisms10010077	2021
	Upscaled Bioammonium/Ammonia Production by Clostridium Aminophilum Cultured with Soy Protein Isolate.	Ward BK, Dufault RJ, Hassell R, Cutulle MA.	J Agric Food Chem	10.1021/acs.jafc.7b00113	2017
	Influence of dietary carbohydrate profile on the dairy cow rumen meta-proteome.	Mulakala BK, Smith KM, Snider MA, Ayers A, Honan MC, Greenwood SL.	J Dairy Sci	10.3168/jds.2022-21812	2022
	Development of a novel endolysin, PanLys.1, for the specific inhibition of Peptostreptococcus anaerobius.	Moon J, Kim H, Lee D, Seo J.	Anim Biosci	10.5713/ab.22.0454	2023
Metabolism	[Effects of nisin on in vitro fermentation, methanogenesis and functional microbial populations of the rumen].	Shen J, Liu Z, Chen Y, Lv P, Zhu W.	Wei Sheng Wu Xue Bao		2016
	Effects of High-Biotin Sample Interference on Antibody Concentrations in Sandwich Immunoassays.	Balieiro Neto G, Engracia Filho JR, Budino FEL, Freitas AWP, Soares WVB.	Vaccines (Basel)	10.3390/vaccines11111627	2023
	Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites.	Zhang Z, Todeschini TC, Wu Y, Kogay R, Naji A, Cardenas Rodriguez J, Mondi R, Kaganovich D, Taylor DW, Bravo JPK, Teplova M, Amen T, Koonin EV, Patel DJ, Nobrega FL.	Cell	10.1016/j.cell.2025.07.002	2025
Metabolism	Decreased competiveness of the foodborne pathogen Campylobacter jejuni during Co-culture with the hyper-ammonia producing anaerobe Clostridium aminophilum.	Anderson RC, Flythe MD, Krueger NA, Callaway TR, Edrington TS, Harvey RB, Nisbet DJ.	Folia Microbiol (Praha)	10.1007/s12223-010-0046-1	2010
Metabolism	Effects of vanillin, quillaja saponin, and essential oils on in vitro fermentation and protein-degrading microorganisms of the rumen.	Patra AK, Yu Z.	Appl Microbiol Biotechnol	10.1007/s00253-013-4930-x	2014
	Impact of Zinc and/or Herbal Mixture on Ruminal Fermentation, Microbiota, and Histopathology in Lambs.	Petric D, Mravcakova D, Kuckova K, Kisidayova S, Cieslak A, Szumacher-Strabel M, Huang H, Kolodziejski P, Lukomska A, Slusarczyk S, Cobanova K, Varadyova Z.	Front Vet Sci	10.3389/fvets.2021.630971	2021
	Incorporation of fresh leaves of wormwood (Artemisia herba alba) and/or rosemary (Rosmarinus officinalis) in the diet of rams: Effect on testicular function, sexual behavior, and blood parameters.	Khnissi S, Bomboi G, Khemiri I, Salem IB, Dattena M, Sai S, Mustapha SB, Cabiddu A, Lassoued N.	Food Sci Nutr	10.1002/fsn3.3293	2023
	Affinity of Hyperammonia-Producing Bacteria To Produce Bioammonium/Ammonia Utilizing Five Organic Nitrogen Substrates for Potential Use as an Organic Liquid Fertilizer.	Ward BK, Dufault RJ, Hassell R, Cutulle MA.	ACS Omega	10.1021/acsomega.7b02083	2018
Phylogeny	Effects of Lactobacillus rhamnosus and Enterococcus faecalis Supplementation as Direct-Fed Microbials on Rumen Microbiota of Boer and Speckled Goat Breeds.	Maake TW, Aiyegoro OA, Adeleke MA.	Vet Sci	10.3390/vetsci8060103	2021
	Ruminal fermentation pattern of acidosis-induced cows fed either monensin or polyclonal antibodies preparation against several ruminal bacteria.	Pacheco RDL, Souza JM, Marino CT, Bastos JPST, Martins CL, Rodrigues PHM, Arrigoni MDB, Millen DD.	Front Vet Sci	10.3389/fvets.2023.1090107	2023
	Effects of Hops Treatment on Nitrogen Retention, Volatile Fatty Acid Accumulations, and Select Microbial Populations of Composting Poultry Litter Intended for Use as a Ruminant Feedstuff.	Castillo-Castillo Y, Arzola-Alvarez C, Fonseca M, Salinas-Chavira J, Ontiveros-Magadan M, Hume ME, Anderson RC, Flythe MD, Byrd JA, Ruiz-Barrera O.	Microorganisms	10.3390/microorganisms11040839	2023
	Evaluation of ruminal methane and ammonia formation and microbiota composition as affected by supplements based on mixtures of tannins and essential oils using Rusitec.	Foggi G, Terranova M, Daghio M, Amelchanka SL, Conte G, Ineichen S, Agnolucci M, Viti C, Mantino A, Buccioni A, Kreuzer M, Mele M.	J Anim Sci Biotechnol	10.1186/s40104-024-01005-8	2024
	Recent Advances in Garcinia cambogia Nutraceuticals in Relation to Its Hydroxy Citric Acid Level. A Comprehensive Review of Its Bioactive Production, Formulation, and Analysis with Future Perspectives.	H Baky M, Fahmy H, Farag MA.	ACS Omega	10.1021/acsomega.2c02838	2022
	Dietary supplementation of Rosmarinus officinalis L. leaves in sheep affects the abundance of rumen methanogens and other microbial populations.	Cobellis G, Yu Z, Forte C, Acuti G, Trabalza-Marinucci M.	J Anim Sci Biotechnol	10.1186/s40104-016-0086-8	2016
	Use of milk proteins as biomarkers of changes in the rumen metaproteome of Holstein cows fed low-fiber, high-starch diets.	Mulakala BK, Smith KM, Snider MA, Ayers A, Honan MC, Greenwood SL.	J Dairy Sci	10.3168/jds.2022-22910	2023
Metabolism	Effects of adding polyclonal antibody preparations on ruminal fermentation patterns and digestibility of cows fed different energy sources.	Marino CT, Otero WG, Rodrigues PH, Dicostanzo A, Millen DD, Pacheco RL, Dilorenzo N, Martins CL, Arrigoni MD.	J Anim Sci	10.2527/jas.2010-3062	2011
Metabolism	The antimicrobial effects of hops (Humulus lupulus L.) on ruminal hyper ammonia-producing bacteria.	Flythe MD.	Lett Appl Microbiol	10.1111/j.1472-765x.2009.02600.x	2009
	Changes in Rumen Microbial Community Composition during Adaption to an In Vitro System and the Impact of Different Forages.	Lengowski MB, Zuber KH, Witzig M, Mohring J, Boguhn J, Rodehutscord M.	PLoS One	10.1371/journal.pone.0150115	2016
Metabolism	The ability of non-bacteriocin producing Streptococcus bovis strains to bind and transfer bovicin HC5 to other sensitive bacteria.	Xavier BM, Russell JB.	Anaerobe	10.1016/j.anaerobe.2008.10.002	2009
	Impacts of polyclonal antibody preparations from avian origin on nutrient digestibility and performance of backgrounding beef cattle.	Silva GM, Schulmeister TM, Podversich F, Tarnonsky F, Garcia-Ascolani ME, DiLorenzo N.	Transl Anim Sci	10.1093/tas/txac016	2022
Pathogenicity	The susceptibility of ionophore-resistant Clostridium aminophilum F to other antibiotics.	Houlihan AJ, Russell JB.	J Antimicrob Chemother	10.1093/jac/dkg398	2003
	Effects of Dietary Supplementation with Hainanmycin on Protein Degradation and Populations of Ammonia-producing Bacteria In vitro.	Wang ZB, Xin HS, Wang MJ, Li ZY, Qu YL, Miao SJ, Zhang YG.	Asian-Australas J Anim Sci	10.5713/ajas.2012.12589	2013
Metabolism	Production of indolic compounds by rumen bacteria isolated from grazing ruminants.	Attwood G, Li D, Pacheco D, Tavendale M.	J Appl Microbiol	10.1111/j.1365-2672.2006.02896.x	2006
	Adult schistosomes have an epithelial bacterial population distinct from the surrounding mammalian host blood.	Gobert GN, McManus DP, McMullan G, Creevey CJ, Carson J, Jones MK, Nawaratna SSK, Weerakoon KG, You H.	PLoS One	10.1371/journal.pone.0263188	2022
	Variation in antimicrobial action of proanthocyanidins from Dorycnium rectum against rumen bacteria.	Sivakumaran S, Molan AL, Meagher LP, Kolb B, Foo LY, Lane GA, Attwood GA, Fraser K, Tavendale M.	Phytochemistry	10.1016/j.phytochem.2004.08.046	2004
	Intestinal FFA3 mediates obesogenic effects in mice on a Western diet.	Lednovich KR, Nnyamah C, Gough S, Priyadarshini M, Xu K, Wicksteed B, Mishra S, Jain S, Zapater JL, Yadav H, Layden BT.	Am J Physiol Endocrinol Metab	10.1152/ajpendo.00016.2022	2022
	Evaluation of liquid and powdered forms of polyclonal antibody preparation against Streptococcus bovis and Fusobacterium necrophorum in cattle adapted or not adapted to highly fermentable carbohydrate diets.	Cassiano ECO, Junior FP, Barros TA, Marino CT, Pacheco RDL, Ferreira FA, Millen DD, Martins MF, Pugine SMP, de Melo MP, Beauchemin KA, Meyer PM, Arrigoni MB, Rodrigues PHM.	Anim Biosci	10.5713/ajas.19.0761	2021
	Lesser Investigated Natural Ingredients for the Management of Obesity.	Majeed M, Majeed S, Nagabhushanam K, Gnanamani M, Mundkur L.	Nutrients	10.3390/nu13020510	2021
	Gut microbiota Modulated by Probiotics and Garcinia cambogia Extract Correlate with Weight Gain and Adipocyte Sizes in High Fat-Fed Mice.	Heo J, Seo M, Park H, Lee WK, Guan LL, Yoon J, Caetano-Anolles K, Ahn H, Kim SY, Kang YM, Cho S, Kim H.	Sci Rep	10.1038/srep33566	2016
Pathogenicity	Effects of oregano essential oil on the ruminal pH and microbial population of sheep.	Zhou R, Wu J, Zhang L, Liu L, Casper DP, Jiao T, Liu T, Wang J, Lang X, Song S, Gong X.	PLoS One	10.1371/journal.pone.0217054	2019
Genetics	Ruminal metagenomic analyses of goat data reveals potential functional microbiota by supplementation with essential oil-cobalt complexes.	Lei Z, Zhang K, Li C, Jiao T, Wu J, Wei Y, Tian K, Li C, Tang D, Davis DI, Casper DP, Jiang H, Wang X, Wang J.	BMC Microbiol	10.1186/s12866-019-1400-3	2019
	Effects of alfalfa flavonoids extract on the microbial flora of dairy cow rumen.	Zhan J, Liu M, Wu C, Su X, Zhan K, Zhao GQ.	Asian-Australas J Anim Sci	10.5713/ajas.16.0839	2017
	Effect of different treatments and alcohol addiction on gut microbiota in minimal hepatic encephalopathy patients.	Zuo Z, Fan H, Tang XD, Chen YM, Xun LT, Li Y, Song ZJ, Zhai HQ.	Exp Ther Med	10.3892/etm.2017.5141	2017
Pathogenicity	The effect of nisin and monensin on ruminal fermentations In vitro.	Callaway TR, Carneiro De Melo AM, Russell JB.	Curr Microbiol	10.1007/s002849900218	1997
	How many ruminal bacteria are there?	Krause DO, Russell JB.	J Dairy Sci	10.3168/jds.s0022-0302(96)76506-2	1996
	Occurrence and Function of the Na⁺-Translocating NADH:Quinone Oxidoreductase in Prevotella spp.	Deusch S, Bok E, Schleicher L, Seifert J, Steuber J.	Microorganisms	10.3390/microorganisms7050117	2019
Metabolism	Biochemical and genetic diversity of carbohydrate-fermenting and obligate amino acid-fermenting hyper-ammonia-producing bacteria from Nellore steers fed tropical forages and supplemented with casein.	Bento CB, de Azevedo AC, Detmann E, Mantovani HC.	BMC Microbiol	10.1186/s12866-015-0369-9	2015
Enzymology	Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol.	Duin EC, Wagner T, Shima S, Prakash D, Cronin B, Yanez-Ruiz DR, Duval S, Rumbeli R, Stemmler RT, Thauer RK, Kindermann M.	Proc Natl Acad Sci U S A	10.1073/pnas.1600298113	2016
	Scrophularia striata Extract Supports Rumen Fermentation and Improves Microbial Diversity in vitro Compared to Monensin.	Bagheri Varzaneh M, Klevenhusen F, Zebeli Q, Petri R.	Front Microbiol	10.3389/fmicb.2018.02164	2018
	The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome.	Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF.	Sci Rep	10.1038/srep20606	2016
	Monensin and Nisin Affect Rumen Fermentation and Microbiota Differently In Vitro.	Shen J, Liu Z, Yu Z, Zhu W.	Front Microbiol	10.3389/fmicb.2017.01111	2017
	Effects of eucalyptus crude oils supplementation on rumen fermentation, microorganism and nutrient digestibility in swamp buffaloes.	Thao NT, Wanapat M, Cherdthong A, Kang S.	Asian-Australas J Anim Sci	10.5713/ajas.2013.13301	2014
Metabolism	Influence of 1-[(E)-2-(2-methyl-4-nitrophenyl)diaz-1-enyl]pyrrolidine-2-carboxylic acid and diphenyliodonium chloride on ruminal protein metabolism and ruminal microorganisms.	Floret F, Chaudhary LC, Ellis WC, El Hassan S, McKain N, Newbold CJ, Wallace RJ.	Appl Environ Microbiol	10.1128/aem.65.7.3258-3260.1999	1999
Pathogenicity	Redundancy in Anaerobic Digestion Microbiomes during Disturbances by the Antibiotic Monensin.	Spirito CM, Daly SE, Werner JJ, Angenent LT.	Appl Environ Microbiol	10.1128/aem.02692-17	2018
Enzymology	Limits to Dihydrogen Incorporation into Electron Sinks Alternative to Methanogenesis in Ruminal Fermentation.	Ungerfeld EM.	Front Microbiol	10.3389/fmicb.2015.01272	2015
Metabolism	An rRNA approach for assessing the role of obligate amino acid-fermenting bacteria in ruminal amino acid deamination.	Krause DO, Russell JB.	Appl Environ Microbiol	10.1128/aem.62.3.815-821.1996	1996
Metabolism	Ammonia-hyperproducing bacteria from New Zealand ruminants.	Attwood GT, Klieve AV, Ouwerkerk D, Patel BK.	Appl Environ Microbiol	10.1128/aem.64.5.1796-1804.1998	1998
Enzymology	Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR.	Reilly K, Attwood GT.	Appl Environ Microbiol	10.1128/aem.64.3.907-913.1998	1998
Metabolism	Isolation and characterization of proteolytic ruminal bacteria from sheep and goats fed the tannin-containing shrub legume Calliandra calothyrsus.	McSweeney CS, Palmer B, Bunch R, Krause DO.	Appl Environ Microbiol	10.1128/aem.65.7.3075-3083.1999	1999
Pathogenicity	Culture-independent microbial community analysis reveals that inulin in the diet primarily affects previously unknown bacteria in the mouse cecum.	Apajalahti JH, Kettunen H, Kettunen A, Holben WE, Nurminen PH, Rautonen N, Mutanen M.	Appl Environ Microbiol	10.1128/aem.68.10.4986-4995.2002	2002
Phylogeny	Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut.	Suau A, Bonnet R, Sutren M, Godon JJ, Gibson GR, Collins MD, Dore J.	Appl Environ Microbiol	10.1128/aem.65.11.4799-4807.1999	1999
Metabolism	Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly.	Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S.	Appl Environ Microbiol	10.1128/aem.01477-07	2007
	Ammonia production by ruminal microorganisms and enumeration, isolation, and characterization of bacteria capable of growth on peptides and amino acids from the sheep rumen.	Eschenlauer SC, McKain N, Walker ND, McEwan NR, Newbold CJ, Wallace RJ.	Appl Environ Microbiol	10.1128/aem.68.10.4925-4931.2002	2002
Genetics	Clostridium vitabionis sp. nov., isolated from the large intestine of a mini-pig.	Shin Y, Paek J, Kim H, Kook JK, Chang YH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004694	2019
Phylogeny	Hydrogenophilus islandicus sp. nov., a thermophilic hydrogen-oxidizing bacterium isolated from an Icelandic hot spring.	Vesteinsdottir H, Reynisdottir DB, Orlygsson J.	Int J Syst Evol Microbiol	10.1099/ijs.0.023572-0	2011
Phylogeny	Clostridium proteoclasticum sp. nov., a novel proteolytic bacterium from the bovine rumen.	Attwood GT, Reilly K, Patel BK.	Int J Syst Bacteriol	10.1099/00207713-46-3-753	1996
Metabolism	Phylogeny of the ammonia-producing ruminal bacteria Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov.	Paster BJ, Russell JB, Yang CM, Chow JM, Woese CR, Tanner R.	Int J Syst Bacteriol	10.1099/00207713-43-1-107	1993

References

#4049	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10710
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium aminophilum (DSM 10710, ATCC 49906, VPI 14602)

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