Name: Thermoclostridium stercorarium subsp. leptospartum C-17-70
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2777

Type strain:

Species: Thermoclostridium stercorarium subsp. leptospartum

Strain Designation: C-17-70

Culture col. no.: DSM 9219, ATCC 51338, IAM 13499, LMG 14474, JCM 9762

Strain history: IAM 13499 <-- Y. Toda C-17-70.

NCBI tax ID(s): 1346611 (strain), 160385 (subspecies)

SI-ID 10824

LMG 14106, IAM 13499, LMG 14474, DSM 9219, ATCC 51338, JCM 9762

Section

Thermoclostridium stercorarium subsp. leptospartum C-17-70 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from cattle manure.

Gram-positive
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Thermoclostridium*
	Species	**Thermoclostridium stercorarium subsp. leptospartum**
	Full Scientific Name (LPSN)	Thermoclostridium stercorarium subsp. leptospartum (Toda et al. 1989) Zhang et al. 2018

	Synonym	Clostridium stercorarium subsp. leptospartum
	Synonym	Thermobacteroides leptospartum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3516]

Culture medium

COPROTHERMOBACTER (CP) MEDIUM (DSMZ Medium 678)

[Ref.: #3516]

Culture medium growth

[Ref.: #3516]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3516]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3516]			growth	60 °C
[Ref.: #67770]			growth	60 °C

[Ref.: #3516]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.515

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3516]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3516]	Sample type/isolated from	cattle manure
[Ref.: #3516]	Country	Japan
[Ref.: #3516]	Country ISO 3 Code	JPN
[Ref.: #3516]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Cattle manure
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB572913 (>99% sequence identity) for Thermoclostridium stercorarium subclade from Microbeatlas

Aquatic Samples	584
Soil Samples	1258
Animal Samples	3737
Plant Samples	421
Total Samples	6000

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3516]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3516]	Clostridium stercorarium subsp. leptospartum gene for 16S ribosomal RNA, partial sequence, strain: JCM 9762	AB572913	1494	ENA	160385 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermoclostridium stercorarium subsp. leptospartum DSM 9219	GCA_001697285	complete	GenBank	1346611 tax ID	*
[Ref.: #66792]	[Clostridium] stercorarium subsp. leptospartum DSM 9219	1346611.4	complete	PATRIC	1346611 tax ID	*

[Ref.: #3516]

GC-content

43 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermoclostridium stercorarium subsp. leptospartum DSM 9219 DSM 9219 NCBI: GCA_001697285.1
[Ref.: #69481]	spore-forming	no	54	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermoclostridium stercorarium subsp. leptospartum DSM 9219 DSM 9219 NCBI: GCA_001697285.1
[Ref.: #69480]	flagellated	no	77.696	no
[Ref.: #69480]	gram-positive	yes	67.662	no
[Ref.: #69480]	anaerobic	yes	99.097	no
[Ref.: #69480]	halophile	no	94.757	no
[Ref.: #69480]	spore-forming	yes	88.921	no
[Ref.: #69480]	glucose-util	yes	88.29	no
[Ref.: #69480]	aerobic	no	98.489	yes
[Ref.: #69480]	thermophile	yes	99.7	no
[Ref.: #69480]	motile	yes	73.146	no
[Ref.: #69480]	glucose-ferment	no	51.397	no

Availability in culture collections External links

[Ref.: #3516]

Culture collection no.

DSM 9219, ATCC 51338, IAM 13499, LMG 14474, JCM 9762

[Ref.: #72307]

SI-ID 10824

References

#3516

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9219

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72307

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10824.1 )

* These data were automatically processed and therefore are not curated

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Thermoclostridium stercorarium subsp. leptospartum DSM 9219 DSM 9219

Thermoclostridium stercorarium subsp. leptospartum DSM 9219 DSM 9219

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