Clostridium septicum (DSM 7534, ATCC 12464, CIP 61.10)

Name: Clostridium septicum (DSM 7534, ATCC 12464, CIP 61.10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2772

Type strain

Strain Designation Pasteur III

Culture col. no. DSM 7534 ATCC 12464 CIP 61.10 NCIMB 547 NCTC 547 8 more

NCBI tax ID(s) 1504

Special Collections DSMZ CCUG JCM CIP

Links

Clostridium septicum Pasteur III is an anaerobe, spore-forming, mesophilic prokaryote of the family Clostridiaceae.

spore-forming motile rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13775

ATCC 12464,NCTC 547,CCUG 4855,NCIB 547,DSM 7534,NCIMB 547,JCM 8144,CCM 5743,CCRC 14552,LMD 47.70,CECT 965,NCCB 47070,BCRC 14552,VTT E-001747,NRRL B-3197,CIP 61.10

@ref 20215

Last LPSN update 2025-12-16 09:47:23

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium septicum

Full scientific name Clostridium septicum (Macé 1889) Ford 1927 (Approved Lists 1980)

Synonyms (1)

"Bacillus septicus"

BacDive ID	Other strains from **Clostridium septicum** (52)	Type strain
134759	C. septicum chevaux, CIP 60.43
135225	C. septicum Cimatsi, CIP 60.17
144316	C. septicum CCUG 24541
146135	C. septicum CCUG 30432
146166	C. septicum CCUG 30490
146595	C. septicum CCUG 31550
147654	C. septicum CCUG 33958
148294	C. septicum CCUG 35171
149718	C. septicum CCUG 38275
149889	C. septicum CCUG 38619
150202	C. septicum CCUG 39271
150301	C. septicum CCUG 39580
150302	C. septicum CCUG 39581
150856	C. septicum CCUG 42570
151569	C. septicum CCUG 44357
151654	C. septicum CCUG 44544
152493	C. septicum CCUG 46934
153449	C. septicum CCUG 49629
153787	C. septicum CCUG 50972
156415	C. septicum CCUG 61624
165501	C. septicum JCM 7285
165502	C. septicum JCM 7286
165503	C. septicum JCM 7287
165504	C. septicum JCM 7288
165505	C. septicum JCM 7290
165506	C. septicum JCM 7291
165507	C. septicum JCM 7293
165508	C. septicum JCM 7294
165509	C. septicum JCM 7295
165510	C. septicum JCM 7296
165511	C. septicum JCM 7297
165512	C. septicum JCM 7298
165513	C. septicum JCM 7299
165514	C. septicum JCM 7300
165515	C. septicum JCM 7301
165516	C. septicum JCM 7302
165517	C. septicum JCM 7303
165518	C. septicum JCM 7304
165519	C. septicum JCM 7305
165520	C. septicum JCM 7306
165521	C. septicum JCM 7307
165522	C. septicum JCM 7309
165523	C. septicum JCM 7311
165524	C. septicum JCM 7312
165525	C. septicum JCM 7342
165748	C. septicum JCM 8145, NCTC 504
165749	C. septicum JCM 8146, CN 622, NCTC 281
165750	C. septicum JCM 8147, NCTC 282
165751	C. septicum JCM 8148, NCTC 284
165752	C. septicum JCM 8149, NCTC 501
165753	C. septicum JCM 8150, NCTC 551
165754	C. septicum JCM 8151, NCTC 286

Morphology

Cell morphology

@ref	Cell shape	Motility
122564	rod-shaped
125439

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3206	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
37332	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
122564	CIP Medium 20	Medium recipe at CIP
3206	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)	Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Deionized water
3206	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3206	positive	growth	37	mesophilic
37332	positive	growth	37	mesophilic
44795	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
122564	positive	growth	37	mesophilic
122564	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
3206	anaerobe
44795	anaerobe
125439	anaerobe

Spore formation

122564

Spore formationyes

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
122564	17234 ChEBI	glucose	-	fermentation
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
122564	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
122564	17632 ChEBI	nitrate	+	reduction
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
122564	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
122564	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
122564	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
122564	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
122564	amylase	-
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
122564	catalase	+	1.11.1.6
122564	DNase	-
122564	gelatinase	-
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
122564	lipase	-
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
122564	oxidase	-
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
122564	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	gluconeogenesis	100	8 of 8
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	vitamin B1 metabolism	92.31	12 of 13
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	propanol degradation	85.71	6 of 7
66794	purine metabolism	80.85	76 of 94
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	NAD metabolism	77.78	14 of 18
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	nitrate assimilation	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	biotin biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	heme metabolism	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	citric acid cycle	71.43	10 of 14
66794	myo-inositol biosynthesis	70	7 of 10
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	glutathione metabolism	64.29	9 of 14
66794	oxidative phosphorylation	60.44	55 of 91
66794	hydrogen production	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	lipid metabolism	51.61	16 of 31
66794	tetrahydrofolate metabolism	50	7 of 14
66794	suberin monomers biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	Entner Doudoroff pathway	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	isoprenoid biosynthesis	50	13 of 26
66794	phenylmercury acetate degradation	50	1 of 2
66794	methionine metabolism	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	tryptophan metabolism	44.74	17 of 38
66794	tyrosine metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	cysteine metabolism	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	urea cycle	38.46	5 of 13
66794	histidine metabolism	37.93	11 of 29
66794	isoleucine metabolism	37.5	3 of 8
66794	arginine metabolism	37.5	9 of 24
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	cyanate degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	valine metabolism	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	arachidonic acid metabolism	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	leucine metabolism	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122564	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
3206	-	-	-	+	-	+/-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence U59278 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	3525
Soil Samples	5709
Animal Samples	41305
Plant Samples	744
Total Samples	51283

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3206	2	Risk group (German classification) According to TRBA 466
122564	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Clostridium septicum strain FDAARGOS_1551	complete	1504.51	1504	99.04
66792	ASM360626v1 assembly for Clostridium septicum DSM 7534	complete	1504.35	1504	98.67
124043	ASM2073666v1 assembly for Clostridium septicum FDAARGOS_1551	chromosome	1504.50	1504	89.11

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Clostridium septicum 16S-23S ribosomal RNA intergenic spacer, partial sequence	AF385894	104	1504
20218	Clostridium septicum genes for 16S rRNA, 16S-23S rRNA spacer region (rrn1), 23S rRNA, partial sequence	AB040715	398	1504
20218	Clostridium septicum genes for 16S rRNA, tRNA-Ile, 23S rRNA, partial and complete sequence	AB040716	473	1504
20218	Clostridium septicum genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequence	AB040717	551	1504
3206	Clostridium septicum 16S ribosomal RNA gene, partial sequence	U59278	1507	1504
67770	Clostridium septicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 8144	AB971813	1476	1504

GC content

@ref	GC-content (mol%)	Method
67770	24	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium septicum strain DSM 7534
PATRIC: 1504.35

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	78.80	no
125439	motility	BacteriaNetⓘ	yes	71.90	no
125439	gram_stain	BacteriaNetⓘ	positive	90.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium septicum DSM 7534
NCBI: GCA_003606265.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.77	no
125438	anaerobic	anaerobicⓘ	yes	85.31	yes
125438	aerobic	aerobicⓘ	no	96.64	yes
125438	spore-forming	spore-formingⓘ	yes	75.51	no
125438	thermophilic	thermophileⓘ	no	88.99	no
125438	flagellated	motile2+ⓘ	yes	78.32	no

Literature

Title	Authors	Journal	DOI	Year
A reverse vaccinomics approach for the designing of novel immunogenic multi-epitope vaccine construct against gas gangrene and related colorectal cancer for Clostridium septicum DSM 7534.	Hassan Khanzada M, Khan A, Khan K, Jalal K, Aghayeva S, Uddin R.	Hum Immunol	10.1016/j.humimm.2024.111169	2024
Severe subcutaneous infection with Clostridium septicum in a herd of native Icelandic horses.	Oddsdottir C, Sigurdardottir OG, Fridriksdottir V, Svansson V, Bragason BTh, Bjornsdottir S.	Acta Vet Scand	10.1186/s13028-025-00792-y	2025
Genome sequence of Clostridium septicum strain WW106, isolated from influent wastewater at a research center with multiple-species research animal facilities.	Wang SX, Park M, Summage-West CV, Reyna M, Kim SG.	Microbiol Resour Announc	10.1128/mra.00768-23	2024
Genome Sequence Analysis of Clostridium chauvoei Strains of European Origin and Evaluation of Typing Options for Outbreak Investigations.	Thomas P, Abdel-Glil MY, Eichhorn I, Semmler T, Werckenthin C, Baumbach C, Murmann W, Bodenthin-Drauschke A, Zimmermann P, Schotte U, Galante D, Slavic D, Wagner M, Wieler LH, Neubauer H, Seyboldt C.	Front Microbiol	10.3389/fmicb.2021.732106	2021
Improved Quantitative Real-Time PCR Protocol for Detection and Quantification of Methanogenic Archaea in Stool Samples.	Cisek AA, Bak I, Cukrowska B.	Microorganisms	10.3390/microorganisms11030660	2023
In vivo evaluation of Clostridioides difficile enoyl-ACP reductase II (FabK) inhibition by phenylimidazole unveils a promising narrow-spectrum antimicrobial strategy.	Dureja C, Rutherford JT, Pavel FB, Norseeda K, Prah I, Sun D, Hevener KE, Hurdle JG.	Antimicrob Agents Chemother	10.1128/aac.01222-23	2024
A multiphasic approach to solve misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system.	Kumaran D, Laflamme C, Ramirez-Arcos S.	Access Microbiol	10.1099/acmi.0.000539.v3	2023
Development of a novel Trueperella pyogenes-specific PCR assay.	Ochi K, Okamoto M, Okamoto M, Okura M, Takamatsu D.	J Vet Med Sci	10.1292/jvms.19-0522	2020
Development of a novel polymerase spiral reaction (PSR) assay for rapid and visual detection of Clostridium perfringens in meat.	Milton AAP, Momin KM, Ghatak S, Priya GB, Angappan M, Das S, Puro K, Sanjukta RK, Shakuntala I, Sen A, Kandpal BK.	Heliyon	10.1016/j.heliyon.2021.e05941	2021
Human fulminant gas gangrene caused by Clostridium chauvoei.	Nagano N, Isomine S, Kato H, Sasaki Y, Takahashi M, Sakaida K, Nagano Y, Arakawa Y.	J Clin Microbiol	10.1128/jcm.01895-07	2008
Novel real-time PCR assay for simultaneous detection and differentiation of Clostridium chauvoei and Clostridium septicum in clostridial myonecrosis.	Halm A, Wagner M, Kofer J, Hein I.	J Clin Microbiol	10.1128/jcm.01975-09	2010
Evaluation of the new Vitek 2 ANC card for identification of medically relevant anaerobic bacteria.	Mory F, Alauzet C, Matuszeswski C, Riegel P, Lozniewski A.	J Clin Microbiol	10.1128/jcm.01778-08	2009
A Thermophilic Phage Endolysin Fusion to a Clostridium perfringens-Specific Cell Wall Binding Domain Creates an Anti-Clostridium Antimicrobial with Improved Thermostability.	Swift SM, Seal BS, Garrish JK, Oakley BB, Hiett K, Yeh HY, Woolsey R, Schegg KM, Line JE, Donovan DM.	Viruses	10.3390/v7062758	2015
Multicenter evaluation of the Vitek 2 anaerobe and Corynebacterium identification card.	Rennie RP, Brosnikoff C, Turnbull L, Reller LB, Mirrett S, Janda W, Ristow K, Krilcich A.	J Clin Microbiol	10.1128/jcm.00450-08	2008
In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria.	Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.01038-10	2011
In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.	Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00595-08	2009
In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone.	Tanaka K, Mikamo H, Nakao K, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00639-06	2006
Gut microbiota, microinflammation, metabolic profile, and zonulin concentration in obese and normal weight subjects.	Zak-Golab A, Kocelak P, Aptekorz M, Zientara M, Juszczyk L, Martirosian G, Chudek J, Olszanecka-Glinianowicz M.	Int J Endocrinol	10.1155/2013/674106	2013
16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria.	Watts GS, Youens-Clark K, Slepian MJ, Wolk DM, Oshiro MM, Metzger GS, Dhingra D, Cranmer LD, Hurwitz BL.	J Appl Microbiol	10.1111/jam.13590	2017
Rapid detection of Clostridium difficile in feces by real-time PCR.	Belanger SD, Boissinot M, Clairoux N, Picard FJ, Bergeron MG.	J Clin Microbiol	10.1128/jcm.41.2.730-734.2003	2003
Abilities of the mCP Agar method and CRENAME alpha toxin-specific real-time PCR assay to detect Clostridium perfringens spores in drinking water.	Maheux AF, Berube E, Boudreau DK, Villeger R, Cantin P, Boissinot M, Bissonnette L, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02791-13	2013
Using a Novel Lysin To Help Control Clostridium difficile Infections.	Wang Q, Euler CW, Delaune A, Fischetti VA.	Antimicrob Agents Chemother	10.1128/aac.01357-15	2015
Multiplex PCR assay for detection and identification of Clostridium botulinum types A, B, E, and F in food and fecal material.	Lindstrom M, Keto R, Markkula A, Nevas M, Hielm S, Korkeala H.	Appl Environ Microbiol	10.1128/aem.67.12.5694-5699.2001	2001
Detection of enterotoxigenic Clostridium perfringens in food and fecal samples with a duplex PCR and the slide latex agglutination test.	Fach P, Popoff MR.	Appl Environ Microbiol	10.1128/aem.63.11.4232-4236.1997	1997
Low prevalence of Clostridium septicum fecal carriage in an adult population.	Kopliku FA, Schubert AM, Mogle J, Schloss PD, Young VB, Aronoff DM.	Anaerobe	10.1016/j.anaerobe.2014.12.001	2015
Rapid and simple method for detecting the toxin B gene of Clostridium difficile in stool specimens by loop-mediated isothermal amplification.	Kato H, Yokoyama T, Kato H, Arakawa Y.	J Clin Microbiol	10.1128/jcm.43.12.6108-6112.2005	2005
First Comparative Analysis of Clostridium septicum Genomes Provides Insights Into the Taxonomy, Species Genetic Diversity, and Virulence Related to Gas Gangrene.	Thomas P, Abdel-Glil MY, Subbaiyan A, Busch A, Eichhorn I, Wieler LH, Neubauer H, Pletz M, Seyboldt C	Front Microbiol	10.3389/fmicb.2021.771945	2021
MLST analysis reveals a highly conserved core genome among poultry isolates of Clostridium septicum.	Neumann AP, Rehberger TG	Anaerobe	10.1016/j.anaerobe.2009.01.005	2009
Cloning, nucleotide sequence and expression of a hemolysin gene of Clostridium septicum.	Imagawa T, Dohi Y, Higashi Y	FEMS Microbiol Lett	10.1016/0378-1097(94)90573-8	1994

References

#3206	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7534
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37332	; Curators of the CIP;
#44795	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4855
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122564	Collection of Institut Pasteur ; Curators of the CIP; CIP 61.10
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium septicum (DSM 7534, ATCC 12464, CIP 61.10)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

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Metabolite tests

Enzymes

Pathway annotation

API 50CHac

API rID32A

Isolation, sampling and environmental information

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Genome sequences

16S sequences

GC content

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