Name: Ruminiclostridium cellobioparum subsp. termitidis CT1112
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2767

Type strain:

Species: Ruminiclostridium cellobioparum subsp. termitidis

Strain Designation: CT1112

Culture col. no.: DSM 5398, ATCC 51846

Strain history: <- J. L. Garcia, Université de Provence, Marseille, France; CT1112 <- P. Hethener and A. Brauman

NCBI tax ID(s): 29371 (subspecies)

SI-ID 43211

ATCC 51846, DSM 5398

Section

Ruminiclostridium cellobioparum subsp. termitidis CT1112 is an anaerobe, mesophilic bacterium that was isolated from hindgut, termite Nasutitermes lujae.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Ruminiclostridium*
	Species	**Ruminiclostridium cellobioparum subsp. termitidis**
	Full Scientific Name (LPSN)	Ruminiclostridium cellobioparum subsp. termitidis (Hethener et al. 1992) Zhang et al. 2018

	Synonym	"Ruminiclostridium* termitidis"*
	Synonym	Clostridium termitidis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2158]

Culture medium

RUMINICLOSTRIDIUM CELLOBIOPARUM MEDIUM (DSMZ Medium 539)

[Ref.: #2158]

Culture medium growth

[Ref.: #2158]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2158]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2158]			growth	37 °C

[Ref.: #2158]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2158]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2158]	Sample type/isolated from	hindgut, termite Nasutitermes lujae
[Ref.: #2158]	Host species	Nasutitermes lujae
[Ref.: #2158]	Country	Republic of the Congo
[Ref.: #2158]	Country ISO 3 Code	COG
[Ref.: #2158]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733680 (>99% sequence identity) for Ruminiclostridium cellobioparum subclade from Microbeatlas

Aquatic Samples	189
Soil Samples	819
Animal Samples	126
Plant Samples	68
Total Samples	1202

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2158]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2158]	Clostridium termitidis partial 16S rRNA gene, type strain DSM5398T	FR733680	1512	ENA	29371 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ruminiclostridium cellobioparum subsp. termitidis CT1112	GCA_000350485	contig	GenBank	1195236 tax ID	*

[Ref.: #2158]	GC-content	41.2 mol%	sequence analysis
[Ref.: #2158]	GC-content	39.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruminiclostridium cellobioparum subsp. termitidis CT1112 CT1112 NCBI: GCA_000350485.1
[Ref.: #69480]	motile	yes	86.104	no
[Ref.: #69480]	flagellated	yes	56.606	no
[Ref.: #69480]	gram-positive	no	63.267	no
[Ref.: #69480]	anaerobic	yes	97.82	yes
[Ref.: #69480]	aerobic	no	96.741	yes
[Ref.: #69480]	halophile	no	97.275	no
[Ref.: #69480]	spore-forming	yes	96.2	no
[Ref.: #69480]	glucose-util	yes	91.278	no
[Ref.: #69480]	thermophile	no	89.966	yes
[Ref.: #69480]	glucose-ferment	yes	55.311	no

Availability in culture collections External links

[Ref.: #2158]

Culture collection no.

DSM 5398, ATCC 51846

[Ref.: #72297]

SI-ID 43211

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on alpha-cellulose, xylan, cellobiose and xylose.	Munir RI, Spicer V, Krokhin OV, Shamshurin D, Zhang X, Taillefer M, Blunt W, Cicek N, Sparling R, Levin DB	BMC Microbiol	10.1186/s12866-016-0711-x	2016	*
Phylogeny	Comparative Genomics of Core Metabolism Genes of Cellulolytic and Non-cellulolytic Clostridium Species.	Lal S, Levin DB	Adv Biochem Eng Biotechnol	10.1007/10_2015_5007	2016	*
Pathogenicity	Quantitative proteomic analysis of the cellulolytic system of Clostridium termitidis CT1112 reveals distinct protein expression profiles upon growth on alpha-cellulose and cellobiose.	Munir RI, Spicer V, Shamshurin D, Krokhin OV, Wilkins J, Ramachandran U, Sparling R, Levin DB	J Proteomics	10.1016/j.jprot.2015.04.026	2015	*
Metabolism	Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability.	Munir RI, Schellenberg J, Henrissat B, Verbeke TJ, Sparling R, Levin DB	PLoS One	10.1371/journal.pone.0104260	2014	*
Genetics	Draft Genome Sequence of the Cellulolytic, Mesophilic, Anaerobic Bacterium Clostridium termitidis Strain CT1112 (DSM 5398).	Lal S, Ramachandran U, Zhang X, Munir R, Sparling R, Levin DB	Genome Announc	10.1128/genomeA.00281-13	2013	*
Metabolism	Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.	Chamkha M, Garcia JL, Labat M	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2105	2001	*

References

#2158

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5398

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72297

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43211.1 )

* These data were automatically processed and therefore are not curated

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Ruminiclostridium cellobioparum subsp. termitidis CT1112 CT1112

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