Name: Clostridium thermopalmarium BVP
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2763

Type strain:

Species: Clostridium thermopalmarium

Strain Designation: BVP

Culture col. no.: DSM 5974, ATCC 51427

Strain history: <- J.-L. Garcia <- B. Ollivier, BVP

NCBI tax ID(s): 1121340 (strain), 29373 (species)

SI-ID 42978

ATCC 51427, DSM 5974

Section

Clostridium thermopalmarium BVP is an anaerobe, spore-forming, thermophilic bacterium that was isolated from palm wine.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium thermopalmarium**
	Full Scientific Name (LPSN)	Clostridium thermopalmarium Soh et al. 1991

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.102

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2401]

Culture medium

RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)

[Ref.: #2401]

Culture medium growth

[Ref.: #2401]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2401]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2401]			growth	55 °C

[Ref.: #2401]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2401]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.475

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2401]	Sample type/isolated from	palm wine
[Ref.: #2401]	Country	Senegal
[Ref.: #2401]	Country ISO 3 Code	SEN
[Ref.: #2401]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Beverage
#Engineered	#Food production	#Fermented
#Host	#Plants	#Tree
#Host Body Product	#Plant	#Plant sap (Flux)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X72869 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	267
Soil Samples	540
Animal Samples	1451
Plant Samples	298
Total Samples	2556

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2401]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2401]	C.thermopalmarium gene for 16S rRNA	X72869	1503	ENA	29373 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium thermopalmarium DSM 5974	GCA_002995795	contig	GenBank	1121340 tax ID	*
[Ref.: #66792]	Clostridium thermopalmarium DSM 5974	GCA_003097175	scaffold	GenBank	1121340 tax ID	*
[Ref.: #66792]	Clostridium thermopalmarium DSM 5974	1121340.3	wgs	PATRIC	1121340 tax ID	*
[Ref.: #66792]	Clostridium thermopalmarium DSM 5974	1121340.4	wgs	PATRIC	1121340 tax ID	*
[Ref.: #66792]	Clostridium thermopalmarium DSM 5974	2599185222	draft	JGI IMG/M	1121340 tax ID	*

[Ref.: #2401]

GC-content

35.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium thermopalmarium DSM 5974 PATRIC: 1121340.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium thermopalmarium DSM 5974 DSM 5974 NCBI: GCA_003097175.1
[Ref.: #69480]	flagellated	yes	51.464	no
[Ref.: #69480]	gram-positive	yes	66.365	no
[Ref.: #69480]	anaerobic	yes	99.433	yes
[Ref.: #69480]	halophile	no	80.712	no
[Ref.: #69480]	spore-forming	yes	85.985	no
[Ref.: #69480]	glucose-util	yes	86.308	no
[Ref.: #69480]	aerobic	no	98.659	yes
[Ref.: #69480]	thermophile	yes	55.582	yes
[Ref.: #69480]	motile	yes	78.725	no
[Ref.: #69480]	glucose-ferment	yes	55.531	no

Availability in culture collections External links

[Ref.: #2401]

Culture collection no.

DSM 5974, ATCC 51427

[Ref.: #72293]

SI-ID 42978

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium bovifaecis sp. nov., a novel acetogenic bacterium isolated from cow manure.	Zhu H, Fu B, Lu S, Liu H, Liu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002928	2018	*
Genetics	First Insights into the Genome Sequence of Clostridium thermopalmarium DSM 5974, a Butyrate-Producing Bacterium Isolated from Palm Wine.	Poehlein A, Hettwer E, Mohnike L, Daniel R	Genome Announc	10.1128/genomeA.00338-18	2018	*
Metabolism	Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and Clostridium thermopalmarium.	Geng A, He Y, Qian C, Yan X, Zhou Z	Bioresour Technol	10.1016/j.biortech.2010.01.042	2010	*
Metabolism	Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.	Chamkha M, Garcia JL, Labat M	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2105	2001	*

References

#2401

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5974

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72293

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42978.1 )

* These data were automatically processed and therefore are not curated

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Clostridium thermopalmarium DSM 5974

Clostridium thermopalmarium DSM 5974 DSM 5974

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