Lacrimispora xylanolytica (DSM 6555, ATCC 49623, JCM 15735)

Name: Lacrimispora xylanolytica (DSM 6555, ATCC 49623, JCM 15735)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2758

Type strain

Culture col. no. DSM 6555 ATCC 49623 JCM 15735

NCBI tax ID(s) 29375

Special Collections DSMZ JCM

Links

Lacrimispora xylanolytica DSM 6555 is an anaerobe, mesophilic prokaryote that was isolated from decayed Pinus patula wood chips.

anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 42587

JCM:15735,ATCC 49623,DSM 6555

@ref 20215

Last LPSN update 2025-12-16 09:47:23

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Lacrimispora

Species Lacrimispora xylanolytica

Full scientific name Lacrimispora xylanolytica (Rogers and Baecker 1991) Haas and Blanchard 2020

Synonyms (1)

Clostridium xylanolyticum

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2729	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
2729	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Xylan 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2729	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

2729

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
2729	decayed Pinus patula wood chips	Pinus patula	South Africa	ZAF	Africa
67770	Decayed Pinus patula wood chips	Pinus patula

Taxonmaps

69479

Global distribution of 16S sequence X76739 (>99% sequence identity) for Lacrimispora from Microbeatlas

Aquatic Samples	156
Soil Samples	221
Animal Samples	1072
Plant Samples	196
Total Samples	1645

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2729	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	C.xylanolyticum gene for 16S ribosomal RNA	X71855	1501		29375
2729	Clostridium xylanolyticum 16S rRNA gene, type strain DSM 6555T	X76739	1448		29375

GC content

@ref	GC-content (mol%)	Method
2729	40.0
67770	40	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.	Chamkha M, Garcia JL, Labat M	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2105	2001

References

#2729	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6555
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacrimispora xylanolytica (DSM 6555, ATCC 49623, JCM 15735)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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