Name: Lacrimispora xylanolytica DSM 6555
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2758

Type strain:

Species: Lacrimispora xylanolytica

Culture col. no.: DSM 6555, ATCC 49623, JCM 15735

Strain history: DSM 6555 <-- G. M. Rogers.

NCBI tax ID(s): 29375 (species)

SI-ID 42587

ATCC 49623, DSM 6555

Special Collections

DSMZ
JCM

Section

Lacrimispora xylanolytica DSM 6555 is an anaerobe bacterium that was isolated from decayed Pinus patula wood chips.

anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Lacrimispora*
	Species	**Lacrimispora xylanolytica**
	Full Scientific Name (LPSN)	Lacrimispora xylanolytica (Rogers and Baecker 1991) Haas and Blanchard 2020

Synonym

Clostridium xylanolyticum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2729]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #2729]

Culture medium growth

[Ref.: #2729]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2729]

Culture medium composition

expand / minimize

[Ref.: #2729]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #2729]

Culture medium growth

[Ref.: #2729]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2729]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2729]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2729]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2729]	Sample type/isolated from	decayed Pinus patula wood chips
[Ref.: #2729]	Host species	Pinus patula
[Ref.: #2729]	Country	South Africa
[Ref.: #2729]	Country ISO 3 Code	ZAF
[Ref.: #2729]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Decayed Pinus patula wood chips
[Ref.: #67770]	Host species	Pinus patula
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X76739 (>99% sequence identity) for Lacrimispora from Microbeatlas

Aquatic Samples	156
Soil Samples	221
Animal Samples	1072
Plant Samples	196
Total Samples	1645

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2729]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2729]	Clostridium xylanolyticum 16S rRNA gene, type strain DSM 6555T	X76739	1448	GenBank ENA	29375 tax ID
[Ref.: #20218]	C.xylanolyticum gene for 16S ribosomal RNA	X71855	1501	GenBank ENA	29375 tax ID	*

[Ref.: #2729]	GC-content	40.0 mol%
[Ref.: #67770]	GC-content	40 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #2729]

Culture collection no.

DSM 6555, ATCC 49623, JCM 15735

[Ref.: #72288]

SI-ID 42587

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.	Chamkha M, Garcia JL, Labat M	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2105	2001	*

References

#2729

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6555

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72288

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42587.1 )

* These data were automatically processed and therefore are not curated

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