Name: Aeromonas salmonicida 20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 275

Type strain:

Species: Aeromonas salmonicida

Strain Designation: 20

Culture col. no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959, GTC 02802, IMET 11051, KCTC 12266, DSM 3241

Strain history: CIP <- 1988, NCIB <- I.W. Smith: strain 20 <- Public Hlth. Lab., Carmarthen, Wales, UK

NCBI tax ID(s): 645 (species)

SI-ID 388

LMG 3780, ATCC 33658, DSM 3241, IMET 11051, NCMB 1102, CIP 103209, JCM 7874, NCIMB 1102, CECT 894, CCRC 13016, CCRC 14163, NCTC 12959, CCM 7246, BCRC 13016, BCRC 14163, HAMBI 1984, KCTC 12266, DSM 19634

Other strains from Aeromonas salmonicida

A. salmonicida 3007-60, DSM 46293, CCM 1318, IMET ...
A. salmonicida CIP 63.25, CCEB 382, NCTC 10402, ...
A. salmonicida CIP 67.13
A. salmonicida CIP 63.4, ATCC 14174, NCIMB 833, ...
A. salmonicida 950704-2/1, CIP 107106
A. salmonicida CIP 57.50, ATCC 7965, NCTC 7812
A. salmonicida 11.79, CIP 79.40
A. salmonicida CCUG 18106, CCM 6167
A. salmonicida CCUG 19976
A. salmonicida CCUG 47405
A. salmonicida JCM 8063, NCTC 10403

Section

Aeromonas salmonicida 20 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from salmon.

Gram-negative
rod-shaped
animal pathogen
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Aeromonas*
	Species	**Aeromonas salmonicida**
	Full Scientific Name (LPSN)	Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)

Synonym

"Bacterium salmonicida"

Information on morphological and physiological properties Morphology

[Ref.: #122396]	Gram stain	negative

[Ref.: #122396]	Cell shape	rod-shaped

[Ref.: #122396]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8224]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #8224]

Culture medium growth

[Ref.: #8224]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8224]

Culture medium composition

expand / minimize

[Ref.: #41734]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41734]

Culture medium growth

[Ref.: #41734]

Culture medium composition

expand / minimize

[Ref.: #122396]

Culture medium

CIP Medium 3

[Ref.: #122396]

Culture medium growth

[Ref.: #122396]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122396]

Culture medium

CIP Medium 72

[Ref.: #122396]

Culture medium growth

[Ref.: #122396]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8224]		growth	28 °C
[Ref.: #41734]		growth	30 °C
[Ref.: #67770]		growth	20 °C
[Ref.: #122396]		growth	22-30 °C
[Ref.: #122396]	no	growth	5 °C
[Ref.: #122396]	no	growth	10 °C
[Ref.: #122396]	no	growth	37 °C
[Ref.: #122396]	no	growth	41 °C

[Ref.: #8224]	Temperature range	mesophilic
[Ref.: #41734]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	psychrophilic
[Ref.: #122396]	Temperature range	psychrophilic
[Ref.: #122396]	Temperature range	mesophilic
[Ref.: #122396]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122396]

Oxygen tolerance

facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #122396]	NaCl		growth	0-4	%
[Ref.: #122396]	NaCl	no	growth	6	%
[Ref.: #122396]	NaCl	no	growth	8	%
[Ref.: #122396]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE, API 20E
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #122396]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #122396]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #122396]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API 20E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122396]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #122396]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]	indole ChEBI	no	* from API 20NE, API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122396]	acetoin ChEBI	-
[Ref.: #122396]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68369]	indole ChEBI			-	* from API 20NE, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122396]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122396]	amylase	+
[Ref.: #122396]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API 20E
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122396]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	+		* from API 20NE, API 20E
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122396]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122396]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #122396]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #122396]	tween esterase	+
[Ref.: #122396]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE, API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #8224]	16660	-	+	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #8224]	16638	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8224]	24911	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	24670	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	24669	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	24659	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	23446	+	-	+	-	-	+	+	+	+	-	-	+	+	+	+	-	-	+	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122396]	362	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122396]	7432	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8224]	Sample type/isolated from	salmon
[Ref.: #8224]	Geographic location (country and/or sea, region)	River Cletter
[Ref.: #8224]	Country	United Kingdom
[Ref.: #8224]	Country ISO 3 Code	GBR
[Ref.: #8224]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Salmon (Salmo salar)
[Ref.: #67770]	Host species	Salmo salar

[Ref.: #122396]	Sample type/isolated from	Animal, Fish, salmon
[Ref.: #122396]	Geographic location (country and/or sea, region)	Cletter River
[Ref.: #122396]	Country	United Kingdom
[Ref.: #122396]	Country ISO 3 Code	GBR
[Ref.: #122396]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host	#Fishes	#Salmonidae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X60405 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples	156
Soil Samples	16
Animal Samples	131
Plant Samples	10
Total Samples	313

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8224]	Pathogenicity (animal)	yes
[Ref.: #8224]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122396]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromonas salmonicida subsp. salmonicida gene for 16S rRNA, strain: JCM 7874	AB027541	1467	ENA	29491 tax ID
[Ref.: #8224]	A.salmonicida salmonicida (ATCC 33658T) gene for 16S ribosomal RNA	X74681	1460	ENA	29491 tax ID
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 16S ribosomal RNA gene, complete sequence	KC244777	1287	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain CECT 894T 16S ribosomal RNA gene, complete sequence	AY987751	1510	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 16S ribosomal RNA gene, partial sequence	JX014449	151	ENA	29491 tax ID	*
[Ref.: #20218]	A.salmonicida (ssp. NCMB 1102) gene for 16S ribosomal RNA	X71836	1283	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida 16S rRNA gene, strain NCIMB 1102	X60405	1503	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida clone 2 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373989	536	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida clone 3 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373990	518	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida strain ATCC 33658 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373991	517	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida strain ATCC 33658 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373992	513	ENA	645 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromonas salmonicida NCTC12959	GCA_900445115	contig	GenBank	645 tax ID
[Ref.: #67770]	Aeromonas salmonicida subsp. salmonicida CIP 103209	GCA_000820065	scaffold	GenBank	29491 tax ID
[Ref.: #67770]	Aeromonas salmonicida subsp. salmonicida ATCC 33658	GCA_001643305	contig	GenBank	29491 tax ID
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida CIP 103209	29491.11	wgs	PATRIC	29491 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658	29491.22	wgs	PATRIC	29491 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida salmonicida ATCC 33658	2744054639	draft	JGI IMG/M	29491 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromonas salmonicida strain NCTC12959 PATRIC: 645.114
[Ref.: #69480]	gram-positive	no	98.852	no
[Ref.: #69480]	anaerobic	no	96.086	no
[Ref.: #69480]	halophile	no	89.435	no
[Ref.: #69480]	spore-forming	no	95.014	no
[Ref.: #69480]	glucose-util	yes	88.328	no
[Ref.: #69480]	thermophile	no	99.57	yes
[Ref.: #69480]	flagellated	yes	92.588	no
[Ref.: #69480]	aerobic	yes	85.431	no
[Ref.: #69480]	motile	yes	89.77	no
[Ref.: #69480]	glucose-ferment	yes	88.253	yes

Availability in culture collections External links

[Ref.: #8224]

Culture collection no.

DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959, GTC 02802, IMET 11051, KCTC 12266, DSM 3241

[Ref.: #69957]

SI-ID 388

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of the Type Strain Aeromonas salmonicida subsp. salmonicida ATCC 33658.	Valderrama K, Soto-Davila M, Santander J	Genome Announc	10.1128/genomeA.01064-17	2017	*
Cultivation	Development of Similar Broth Microdilution Methods to Determine the Antimicrobial Susceptibility of Flavobacterium columnare and F. psychrophilum.	Gieseker CM, Crosby TC, Mayer TD, Bodeis SM, Stine CB	J Aquat Anim Health	10.1080/08997659.2015.1105878	2016	*
Pathogenicity	Marine Lactobacillus pentosus H16 protects Artemia franciscana from Vibrio alginolyticus pathogenic effects.	Garces ME, Sequeiros C, Olivera NL	Dis Aquat Organ	10.3354/dao02815	2015	*
Pathogenicity	Quality control ranges for testing broth microdilution susceptibility of Flavobacterium columnare and F. psychrophilum to nine antimicrobials.	Gieseker CM, Mayer TD, Crosby TC, Carson J, Dalsgaard I, Darwish AM, Gaunt PS, Gao DX, Hsu HM, Lin TL, Oaks JL, Pyecroft M, Teitzel C, Somsiri T, Wu CC	Dis Aquat Organ	10.3354/dao02527	2012	*
Phylogeny	First description of atypical furunculosis in freshwater farmed Atlantic salmon, Salmo salar L., in Chile.	Godoy M, Gherardelli V, Heisinger A, Fernandez J, Olmos P, Ovalle L, Ilardi P, Avendano-Herrera R	J Fish Dis	10.1111/j.1365-2761.2010.01142.x	2010	*
Enzymology	Isolation and cDNA cloning of an antibacterial L-amino acid oxidase from the skin mucus of the great sculpin Myoxocephalus polyacanthocephalus.	Nagashima Y, Tsukamoto C, Kitani Y, Ishizaki S, Nagai H, Yanagimoto T	Comp Biochem Physiol B Biochem Mol Biol	10.1016/j.cbpb.2009.05.006	2009	*
Pathogenicity	Standardization of a broth microdilution susceptibility testing method to determine minimum inhibitory concentrations of aquatic bacteria.	Miller RA, Walker RD, Carson J, Coles M, Coyne R, Dalsgaard I, Gieseker C, Hsu HM, Mathers JJ, Papapetropoulou M, Petty B, Teitzel C, Reimschuessel R	Dis Aquat Organ	10.3354/dao064211	2005	*
Pathogenicity	Antimicrobial susceptibility testing of aquatic bacteria: quality control disk diffusion ranges for Escherichia coli ATCC 25922 and Aeromonas salmonicida subsp. salmonicida ATCC 33658 at 22 and 28 degrees C.	Miller RA, Walker RD, Baya A, Clemens K, Coles M, Hawke JP, Henricson BE, Hsu HM, Mathers JJ, Oaks JL, Papapetropoulou M, Reimschuessel R	J Clin Microbiol	10.1128/JCM.41.9.4318-4323.2003	2003	*
	Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing.	Bartkova S, Leekitcharoenphon P, Aarestrup FM, Dalsgaard I	Front Microbiol	10.3389/fmicb.2017.02411	2017	*
	Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.	Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR	Appl Microbiol Biotechnol	10.1007/s00253-015-6476-6	2015	*
	Association of Type III secretion genes with virulence of Aeromonas salmonicida subsp. salmonicida.	Burr SE, Wahli T, Segner H, Pugovkin D, Frey J	Dis Aquat Organ	10.3354/dao057167	2003	*

References

#8224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19634

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41734 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69957

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID388.1 )

#122396 Collection of Institut Pasteur ; Curators of the CIP; CIP 103209
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aeromonas salmonicida subsp. salmonicida in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Aeromonas salmonicida strain NCTC12959

Change proposal

Change proposal