Name: Aeromonas salmonicida DSM 19634
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 275

Type strain:

Species: Aeromonas salmonicida

Culture col. no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959, GTC 02802

Strain history: ATCC 33658 <-- NCMB 1102 <-- I. W. Smith <-- Public Health Lab., Carmarthen, Wales, UK.

NCBI tax ID(s): 645 (species)

Other strains from Aeromonas salmonicida

A. salmonicida 3007-60, DSM 46293, CCM 1318, IMET ...
A. salmonicida CIP 63.25, CCEB 382, NCTC 10402, ...
A. salmonicida CIP 67.13
A. salmonicida CIP 63.4, ATCC 14174, NCIMB 833, ...
A. salmonicida CIP 107106
A. salmonicida CIP 57.50, ATCC 7965, NCTC 7812
A. salmonicida CIP 79.40
A. salmonicida CCUG 18106, CCM 6167
A. salmonicida CCUG 19976
A. salmonicida CCUG 47405
A. salmonicida JCM 8063, NCTC 10403

Section

Aeromonas salmonicida DSM 19634 is a mesophilic animal pathogen that was isolated from salmon.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	25-08-2022 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Pseudomonadota
	Class	Gammaproteobacteria
	Order	Aeromonadales
	Family	Aeromonadaceae
	Genus	Aeromonas
	Species	Aeromonas salmonicida
	Full Scientific Name (PNU)	Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)

Synonym

Bacterium salmonicida

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8224]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #8224]

Culture medium growth

[Ref.: #8224]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8224]

Culture medium composition

expand / minimize

[Ref.: #41734]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41734]

Culture medium growth

[Ref.: #41734]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8224]	growth	28 °C
[Ref.: #41734]	growth	30 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #8224]	Temperature range	mesophilic
[Ref.: #41734]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE, API 20E
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API 20E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68369]	indole ChEBI	* from API 20NE, API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68369]		indole ChEBI		-	* from API 20NE, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #68369]	gelatinase	+		* from API 20NE, API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE, API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #8224]	10826	-	+	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #8224]	10804	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8224]	17300	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	17072	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	17071	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	17062	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	15856	+	-	+	-	-	+	+	+	+	-	-	+	+	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8224]	Sample type/isolated from	salmon
[Ref.: #8224]	Geographic location (country and/or sea, region)	River Cletter
[Ref.: #8224]	Country	United Kingdom
[Ref.: #8224]	Country ISO 3 Code	GBR
[Ref.: #8224]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Salmon (Salmo salar)
[Ref.: #67770]	Host species	Salmo salar

Isolation sources categories

#Host	#Fishes	-
#Host	#Fishes	#Salmonidae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8224]	Pathogenicity (animal)	yes
[Ref.: #8224]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain CECT 894T 16S ribosomal RNA gene, complete sequence	AY987751	1510	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida clone 2 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373989	536	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida clone 3 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373990	518	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida strain ATCC 33658 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373991	517	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida strain ATCC 33658 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373992	513	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 16S ribosomal RNA gene, partial sequence	JX014449	151	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 16S ribosomal RNA gene, complete sequence	KC244777	1287	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida 16S rRNA gene, strain NCIMB 1102	X60405	1503	ENA	29491 tax ID	*
[Ref.: #20218]	A.salmonicida (ssp. NCMB 1102) gene for 16S ribosomal RNA	X71836	1283	ENA	29491 tax ID	*
[Ref.: #8224]	A.salmonicida salmonicida (ATCC 33658T) gene for 16S ribosomal RNA	X74681	1460	ENA	29491 tax ID
[Ref.: #67770]	Aeromonas salmonicida subsp. salmonicida gene for 16S rRNA, strain: JCM 7874	AB027541	1467	ENA	29491 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aeromonas salmonicida NCTC12959	GCA_900445115	contig	GenBank	645 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida CIP 103209	GCA_000820065	scaffold	GenBank	29491 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida ATCC 33658	GCA_001643305	contig	GenBank	29491 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida strain NCTC12959	645.114	wgs	PATRIC	645 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida CIP 103209	29491.11	wgs	PATRIC	29491 tax ID	*
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658	29491.22	wgs	PATRIC	29491 tax ID	*

Availability in culture collections External links

[Ref.: #8224]

Culture collection no.

DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959, GTC 02802

[Ref.: #20218]

Associated Passport(s) in StrainInfo

724532, 1923, 621040, 289363, 148449, 183288, 1922, 205549, 335446

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Antimicrobial susceptibility testing of aquatic bacteria: quality control disk diffusion ranges for Escherichia coli ATCC 25922 and Aeromonas salmonicida subsp. salmonicida ATCC 33658 at 22 and 28 degrees C.	Miller RA, Walker RD, Baya A, Clemens K, Coles M, Hawke JP, Henricson BE, Hsu HM, Mathers JJ, Oaks JL, Papapetropoulou M, Reimschuessel R	J Clin Microbiol	10.1128/JCM.41.9.4318-4323.2003	2003	*
Pathogenicity	Standardization of a broth microdilution susceptibility testing method to determine minimum inhibitory concentrations of aquatic bacteria.	Miller RA, Walker RD, Carson J, Coles M, Coyne R, Dalsgaard I, Gieseker C, Hsu HM, Mathers JJ, Papapetropoulou M, Petty B, Teitzel C, Reimschuessel R	Dis Aquat Organ	10.3354/dao064211	2005	*
Enzymology	Isolation and cDNA cloning of an antibacterial L-amino acid oxidase from the skin mucus of the great sculpin Myoxocephalus polyacanthocephalus.	Nagashima Y, Tsukamoto C, Kitani Y, Ishizaki S, Nagai H, Yanagimoto T	Comp Biochem Physiol B Biochem Mol Biol	10.1016/j.cbpb.2009.05.006	2009	*
Phylogeny	First description of atypical furunculosis in freshwater farmed Atlantic salmon, Salmo salar L., in Chile.	Godoy M, Gherardelli V, Heisinger A, Fernandez J, Olmos P, Ovalle L, Ilardi P, Avendano-Herrera R	J Fish Dis	10.1111/j.1365-2761.2010.01142.x	2010	*
Pathogenicity	Quality control ranges for testing broth microdilution susceptibility of Flavobacterium columnare and F. psychrophilum to nine antimicrobials.	Gieseker CM, Mayer TD, Crosby TC, Carson J, Dalsgaard I, Darwish AM, Gaunt PS, Gao DX, Hsu HM, Lin TL, Oaks JL, Pyecroft M, Teitzel C, Somsiri T, Wu CC	Dis Aquat Organ	10.3354/dao02527	2012	*
Pathogenicity	Marine Lactobacillus pentosus H16 protects Artemia franciscana from Vibrio alginolyticus pathogenic effects.	Garces ME, Sequeiros C, Olivera NL	Dis Aquat Organ	10.3354/dao02815	2015	*
Cultivation	Development of Similar Broth Microdilution Methods to Determine the Antimicrobial Susceptibility of Flavobacterium columnare and F. psychrophilum.	Gieseker CM, Crosby TC, Mayer TD, Bodeis SM, Stine CB	J Aquat Anim Health	10.1080/08997659.2015.1105878	2016	*
Genetics	Draft Genome Sequence of the Type Strain Aeromonas salmonicida subsp. salmonicida ATCC 33658.	Valderrama K, Soto-Davila M, Santander J	Genome Announc	10.1128/genomeA.01064-17	2017	*
	Association of Type III secretion genes with virulence of Aeromonas salmonicida subsp. salmonicida.	Burr SE, Wahli T, Segner H, Pugovkin D, Frey J	Dis Aquat Organ	10.3354/dao057167	2003	*
	Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.	Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR	Appl Microbiol Biotechnol	10.1007/s00253-015-6476-6	2015	*
	Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing.	Bartkova S, Leekitcharoenphon P, Aarestrup FM, Dalsgaard I	Front Microbiol	10.3389/fmicb.2017.02411	2017	*

References

#8224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19634

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41734 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

* These data were automatically processed and therefore are not curated

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