Aeromonas salmonicida | Type strain | DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

Strain identifier

BacDive ID: 275

Type strain:

Species: Aeromonas salmonicida

Culture col. no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Aeromonas salmonicida DSM 19634 is a mesophilic animal pathogen that was isolated from salmon.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	10-09-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Aeromonadales
	Family	Aeromonadaceae
	Genus	Aeromonas
	Species	Aeromonas salmonicida
	Full Scientific Name (PNU)	Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)

Information on morphological and physiological propertiesMorphology and physiology

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #8224]	6411	-	+	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #8224]	6388	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8224]	9391	+	-	+	-	-	+	+	+	+	-	-	+	+	+	+	-	-	+	-	-	+
[Ref.: #8224]	10574	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	10581	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	10582	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	10793	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8224]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a), 28°C

[Ref.: #8224]

Culture medium growth

[Ref.: #8224]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41734]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41734]

Culture medium growth

[Ref.: #41734]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8224]			growth	28 ̊C
[Ref.: #41734]			growth	30 ̊C

[Ref.: #8224]	Temperature range	mesophilic
[Ref.: #41734]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8224]

Sample type/isolated from

salmon

[Ref.: #8224]

Geographic location (country and/or sea, region)

River Cletter

[Ref.: #8224]

Country

United Kingdom

[Ref.: #8224]

Country ISO 3 Code

GBR

[Ref.: #8224]

Continent

Europe

Isolation sources categories

#Host

#Fishes

#Salmonidae

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8224]	Pathogenicity (animal)	yes
[Ref.: #8224]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida RTX protein (asx) gene, complete cds	AF218037 ENA		14660	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida ADP-ribosyltransferase (aexT) gene, complete cds; and unknown gene	AF288366 ENA		2260	645 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Aeromonas salmonicida subsp. salmonicida pAsal1 plasmid, type strain ATCC33658	AM181130 ENA		900	29491 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Aeromonas salmonicida subsp. salmonicida partial recA gene, strain ATCC 33658	AM490880 ENA		348	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 DNA gyrase subunit beta (gyrB) gene, partial cds	AY101773 ENA		964	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain ATCC 33658 internal transcribed spacer 1, complete sequence	AY116916 ENA		513	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 RNA polymerase sigma-70 factor (rpoD) gene, partial cds	AY169327 ENA		813	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida ATCC 33658 class B beta-lactamase (cphA5) gene, complete cds	AY227051 ENA		765	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida DNA gyrase B (gyrB) gene, partial cds	AY294485 ENA		1116	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 ferrous superoxide dismutase (sodB) gene, partial cds	AY738408 ENA		546	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894T LuxR-type transcriptional regulator gene, complete cds	AY764348 ENA		783	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain ATCC 33658 RpoB (rpoB) gene, partial cds	AY851098 ENA		517	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894T GyrB (gyrB) gene, partial cds	AY987517 ENA		1118	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894T LuxI-like protein gene, complete cds	AY987583 ENA		624	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894T 23S ribosomal RNA gene, complete sequence	AY987630 ENA		2753	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894T RpoD (rpoD) gene, partial cds	AY987688 ENA		812	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894T 16S ribosomal RNA gene, complete sequence	AY987751 ENA	16S	1510	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida clone 2 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373989 ENA	16S	536	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida clone 3 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373990 ENA	16S	518	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain ATCC 33658 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373991 ENA	16S	517	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain ATCC 33658 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373992 ENA	16S	513	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 60 kDa chaperonin (cpn60) gene, partial cds	EU306828 ENA		555	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 flagellin A (flaA) gene, complete cds	EU410320 ENA		918	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 beta galactosidase (lacZ) pseudogene, partial sequence	FJ178193 ENA		274	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 type IV pilus assembly protein (tapC) pseudogene, partial sequence	FJ178203 ENA		430	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 polysaccharide deacetylase pseudogene, partial sequence	FJ178211 ENA		302	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 sulfite reductase [NADPH] flavoprotein alpha-component (cysJ) pseudogene, partial sequence	FJ178217 ENA		234	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 class II fumarate hydratase (fumC) gene, partial cds	FJ178226 ENA		314	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 GGDEF domain protein pseudogene, partial sequence	FJ178232 ENA		249	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 predicted Fe-S-cluster redox enzyme gene, partial cds; and pilus assembly protein TapF (tapF) pseudogene, partial sequence	FJ178239 ENA		608	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 toxic extracellular endopeptidase (asaP1) pseudogene, partial sequence	FJ178249 ENA		234	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 flp pilus assembly protein FlpI (flpI) pseudogene, partial sequence	FJ178255 ENA		557	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 flp pilus assembly protein FlpF (flpF) gene, partial cds; and flp pilus assembly protein FlpG (flpG) pseudogene, partial sequence	FJ178262 ENA		363	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 flp pilus assembly protein FlpB (flpB) pseudogene, partial sequence	FJ178269 ENA		344	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 catabolic acetolactate synthase (ilvB) pseudogene, partial sequence	FJ178275 ENA		323	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 luxR family response regulator pseudogene, partial sequence	FJ178281 ENA		303	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 elastase (ahpB) pseudogene, partial sequence	FJ178287 ENA		317	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 P5G014-like protein pseudogene, partial sequence	FJ178292 ENA		328	29491 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Aeromonas salmonicida partial recA gene, type strain CECT 894T	FN179261 ENA		720	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 malate dehydrogenase (mdh) gene, complete cds	HM163317 ENA		936	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 DNA polymerase subunits gamma and tau (dnaX) gene, partial cds	HQ442441 ENA		496	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 ATP synthase F1 beta subunit (atpD) gene, partial cds	HQ442537 ENA		501	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 DNA gyrase subunit beta (gyrB) gene, partial cds	HQ442680 ENA		923	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 RNA polymerase sigma-70 factor (rpoD) gene, partial cds	HQ442843 ENA		652	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 recA protein (recA) gene, partial cds	HQ442955 ENA		600	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 chaperone Hsp40 (dnaJ) gene, partial cds	HQ442979 ENA		800	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida strain CECT 894 DNA gyrase subunit A (gyrA) gene, partial cds	HQ443089 ENA		709	645 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 DnaJ (dnaJ) gene, partial cds	JN215534 ENA		891	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 RNA polymerase sigma-70 factor (rpoD) gene, partial cds	JN215541 ENA		831	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 recombinase A (recA) gene, complete cds	JN660361 ENA		1062	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CECT 894 DNA gyrase subunit beta (gyrB) gene, partial cds	JN711820 ENA		1089	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 70 kDa heat shock protein (dnaK) gene, partial cds	JN829124 ENA		816	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 citrate synthase (gltA) gene, partial cds	JN829318 ENA		462	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 DNA gyrase beta subuni (gyrB) gene, partial cds	JN829513 ENA		780	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 DNA repair protein RadA (radA) gene, partial cds	JN829708 ENA		405	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 RNA polymerase beta subunit (rpoB) gene, partial cds	JN829900 ENA		426	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 elongation factor Ts (tsf) gene, partial cds	JN830095 ENA		702	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 cell division protein ZipA (zipA) gene, partial cds	JN830290 ENA		402	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 16S ribosomal RNA gene, partial sequence	JX014449 ENA	16S	151	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 DNA gyrase subunit B (gyrB) gene, partial cds	KC244775 ENA		990	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 16S ribosomal RNA gene, complete sequence	KC244777 ENA	16S	1287	29491 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aeromonas salmonicida coded portion of proteolysis tag tmRNA gene	U68075 ENA		360	645 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Aeromonas salmonicida subsp. salmonicida 16S rRNA gene, strain NCIMB 1102	X60405 ENA	16S	1503	29491 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	A.salmonicida (ssp. NCMB 1102) gene for 16S ribosomal RNA	X71836 ENA	16S	1283	29491 tax ID	*
[Ref.: #8224]	Marker Gene (EMBL Direct submission)	A.salmonicida salmonicida (ATCC 33658T) gene for 16S ribosomal RNA	X74681 ENA	16S	1460	29491 tax ID

Availability in culture collectionsStrain availability

[Ref.: #8224]

Culture collection no.

DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

[Ref.: #8224]

Strain history

<- NCIMB <- I. W. Smith, Marine Laboratory <- Public Health Laboratory, Carmarthen, Wales

[Ref.: #20218]

Associated Passport(s) in StrainInfo

724532, 1923, 621040, 289363, 148449, 183288, 1922, 205549, 335446

References

#8224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19634

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41734 ; Curators of the CIP;
* These References are textmined

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