Aeromonas salmonicida | Type strain | DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

Strain identifier

BacDive ID: 275

Type strain:

Species: Aeromonas salmonicida

Culture col. no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

Strain history: <- NCIMB <- I. W. Smith, Marine Laboratory <- Public Health Laboratory, Carmarthen, Wales

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Aeromonas salmonicida DSM 19634 is a mesophilic animal pathogen that was isolated from salmon.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Aeromonadales
	Family	Aeromonadaceae
	Genus	Aeromonas
	Species	Aeromonas salmonicida
	Full Scientific Name (PNU)	Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)

Synonym

Bacterium salmonicida

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8224]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #8224]

Culture medium growth

[Ref.: #8224]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41734]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41734]

Culture medium growth

[Ref.: #41734]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8224]			growth	28 ̊C
[Ref.: #41734]			growth	30 ̊C

[Ref.: #8224]	Temperature range	mesophilic
[Ref.: #41734]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #8224]	9332	-	+	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #8224]	9310	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8224]	15079	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	14852	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	14851	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	14844	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+
[Ref.: #8224]	13659	+	-	+	-	-	+	+	+	+	-	-	+	+	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8224]	Sample type/isolated from	salmon
[Ref.: #8224]	Geographic location (country and/or sea, region)	River Cletter
[Ref.: #8224]	Country	United Kingdom
[Ref.: #8224]	Country ISO 3 Code	GBR
[Ref.: #8224]	Continent	Europe

Isolation sources categories

#Host

#Fishes

#Salmonidae

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #8224]	Pathogenicity (animal)	yes
[Ref.: #8224]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain CECT 894T 16S ribosomal RNA gene, complete sequence	AY987751	1510	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida clone 2 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373989	536	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida clone 3 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373990	518	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida strain ATCC 33658 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373991	517	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida strain ATCC 33658 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373992	513	ENA	645 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain CIP 103209 16S ribosomal RNA gene, partial sequence	JX014449	151	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 16S ribosomal RNA gene, complete sequence	KC244777	1287	ENA	29491 tax ID	*
[Ref.: #20218]	Aeromonas salmonicida subsp. salmonicida 16S rRNA gene, strain NCIMB 1102	X60405	1503	ENA	29491 tax ID	*
[Ref.: #20218]	A.salmonicida (ssp. NCMB 1102) gene for 16S ribosomal RNA	X71836	1283	ENA	29491 tax ID	*
[Ref.: #8224]	A.salmonicida salmonicida (ATCC 33658T) gene for 16S ribosomal RNA	X74681	1460	ENA	29491 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aeromonas salmonicida O23A	GCA_002180335	complete	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida A527	GCA_002764135	complete	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida S68	GCA_002214265	complete	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida S121	GCA_002214245	complete	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida S44	GCA_002214305	complete	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida SRW-OG1	GCA_012931585	complete	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida NCTC12959	GCA_900445115	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida CIP 103209	GCA_000820065	scaffold	GenBank	29491 tax ID
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida ATCC 33658	GCA_001643305	contig	GenBank	29491 tax ID
[Ref.: #66792]	Aeromonas salmonicida 3012STDY7122732	GCA_900683655	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida 947C	GCA_003947395	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida AJ83	GCA_003947355	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida Y567	GCA_001466435	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida ECFood+05	GCA_002317045	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida JF2480	GCA_009725185	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida 17	GCA_003259515	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida A308	GCA_003947375	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida Y47	GCA_001481535	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida Z5-5	GCA_003265515	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida Z5-5	GCA_900491655	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida Y577	GCA_001481545	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida YK	GCA_002093675	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida CIP 107036	GCA_006243325	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida M18076-11	GCA_002883135	contig	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida BG	GCA_002093695	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida UBA8809	GCA_003505635	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida UBA10746	GCA_003483825	scaffold	GenBank	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida	645.58	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida CBA100	645.8	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain 17	645.112	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain 947C	645.122	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain A308	645.121	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain A527	645.50	complete	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain AJ83	645.120	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain BG	645.41	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain CIP 107036	645.179	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain ECFood+05	645.46	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain JF2480	645.192	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain M18076-11	645.111	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain NCTC12959	645.114	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S121	645.43	complete	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S121	645.63	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S121	645.60	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S121	645.62	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S121	645.59	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S121	645.61	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S44	645.64	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S44	645.67	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S44	645.45	complete	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S44	645.66	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S44	645.65	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S44	645.68	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S68	645.44	complete	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S68	645.72	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S68	645.71	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S68	645.69	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain S68	645.70	plasmid	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain UBA10746	645.117	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain UBA8809	645.118	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain Y47	645.13	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain Y567	645.12	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain Y577	645.14	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain YK	645.40	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain Z5-5	645.113	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida strain Z5-5	645.115	wgs	PATRIC	645 tax ID
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida CIP 103209	29491.11	wgs	PATRIC	29491 tax ID
[Ref.: #66792]	Aeromonas salmonicida subsp. salmonicida strain ATCC 33658	29491.22	wgs	PATRIC	29491 tax ID
[Ref.: #66792]	Aeromonas salmonicida 17	2773857659	permanent	JGI IMG/M	645 tax ID

Availability in culture collectionsExternal links

[Ref.: #8224]

Culture collection no.

DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

[Ref.: #20218]

Associated Passport(s) in StrainInfo

724532, 1923, 621040, 289363, 148449, 183288, 1922, 205549, 335446

References

#8224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19634

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41734 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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