Name: Clostridium symbiosum 2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2721

Type strain:

Species: Clostridium symbiosum

Strain Designation: 2

Culture col. no.: DSM 934, ATCC 14940, LSU (M. Sebald), JCM 1297, BCRC 14487, CCM 6065, NCTC 13233, VTT E-981051

Strain history: C. Kaneuchi <-- ATCC 14940 <-- R. E. Reeves ("Bacteroides symbiosus") <-- J. Shaffer 2 (M. Sebald strain LSU).

NCBI tax ID(s): 411472 (strain), 1512 (species)

SI-ID 36207

ATCC 14940, DSM 934, JCM 1297, CCRC 14487, CCM 6065, BCRC 14487, VTT E-981051, LMG 28908

Other strains from Clostridium symbiosum

C. symbiosum SRB539-5-G-R, DSM 29356
C. symbiosum CCUG 41715
C. symbiosum CCUG 45577 B
C. symbiosum CCUG 49377
C. symbiosum CCUG 50474
C. symbiosum CCUG 50960
C. symbiosum CCUG 56568
C. symbiosum CCUG 62167 Q
C. symbiosum LT0011, DSM 108250
C. symbiosum H4_29, DSM 108200

Section

Clostridium symbiosum 2 is an anaerobe, mesophilic, Gram-positive bacterium of the family Clostridiaceae.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium symbiosum**
	Full Scientific Name (LPSN)	Clostridium symbiosum (Stevens 1956) Kaneuchi et al. 1976 (Approved Lists 1980)

Synonym

"Bacteroides symbiosus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #472]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #472]

Culture medium growth

[Ref.: #472]

Culture medium link

Medium recipe at MediaDive

[Ref.: #472]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #472]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #472]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #472]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.364

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence LC036311 (>99% sequence identity) for [Clostridium] symbiosum subclade from Microbeatlas

Aquatic Samples	3039
Soil Samples	1377
Animal Samples	184529
Plant Samples	554
Total Samples	189499

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #472]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #472]	Clostridium symbiosum strain DSM 934 16S ribosomal RNA gene, partial sequence	HM245954	845	ENA	1512 tax ID
[Ref.: #67770]	[Clostridium] symbiosum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1297	LC036311	1492	ENA	1512 tax ID
[Ref.: #20218]	Clostridium symbiosum strain ATCC 14940 16S ribosomal RNA gene, partial sequence	M59112	1478	ENA	1512 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum gene for 16S rRNA, partial sequence, strain: JCM 1297	AB116355	458	ENA	33905 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	[Clostridium] symbiosum ATCC 14940	GCA_000466485	scaffold	GenBank	411472 tax ID
[Ref.: #67770]	[Clostridium] symbiosum NCTC13233	GCA_900461275	contig	GenBank	1512 tax ID
[Ref.: #66792]	[Clostridium] symbiosum strain NCTC13233	1512.13	wgs	PATRIC	1512 tax ID	*
[Ref.: #66792]	Clostridium symbiosum ATCC 14940	411472.5	wgs	PATRIC	411472 tax ID	*
[Ref.: #66792]	Lachnoclostridium symbiosum ATCC 14940	2597490298	draft	JGI IMG/M	411472 tax ID	*
[Ref.: #66792]	Lachnoclostridium symbiosum NCTC 13233	2814123396	draft	JGI IMG/M	1512 tax ID	*

[Ref.: #472]	GC-content	46.1 mol%
[Ref.: #67770]	GC-content	46.1 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium symbiosum ATCC 14940 PATRIC: 411472.5
[Ref.: #69481]	spore-forming	yes	63	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium symbiosum ATCC 14940 PATRIC: 411472.5
[Ref.: #69480]	gram-positive	yes	81.91	no
[Ref.: #69480]	anaerobic	yes	99.628	yes
[Ref.: #69480]	halophile	no	92.74	no
[Ref.: #69480]	spore-forming	yes	83.555	no
[Ref.: #69480]	glucose-util	yes	90.827	no
[Ref.: #69480]	aerobic	no	97.934	yes
[Ref.: #69480]	flagellated	yes	52.575	no
[Ref.: #69480]	thermophile	no	97.38	yes
[Ref.: #69480]	motile	yes	83.483	no
[Ref.: #69480]	glucose-ferment	yes	65.374	no

Availability in culture collections External links

[Ref.: #472]

Culture collection no.

DSM 934, ATCC 14940, LSU (M. Sebald), JCM 1297, BCRC 14487, CCM 6065, NCTC 13233, VTT E-981051

[Ref.: #72249]

SI-ID 36207

References

#472	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 934

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72249

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36207.1 )

* These data were automatically processed and therefore are not curated

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Clostridium symbiosum ATCC 14940

Clostridium symbiosum ATCC 14940

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