Name: Clostridium sardiniense DSM 2632
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2662

Type strain:

Species: Clostridium sardiniense

Culture col. no.: DSM 2632, ATCC 33455, VPI 2971

Strain history: <- ATCC <- VPI, 2971 <- A.R. Prévot

NCBI tax ID(s): 29369 (species)

SI-ID 40504

ATCC 33455, DSM 2632, BCRC 14530, CCRC 14530

Other strains from Clostridium sardiniense

C. sardiniense HA 7103 (KZ), 10015, HA 7103, DSM ...
C. sardiniense HA 9103 (KZ), DSM 600, ATCC 27635, ...

Section

Clostridium sardiniense DSM 2632 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

Gram-positive
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium sardiniense**
	Full Scientific Name (LPSN)	Clostridium sardiniense corrig. Prévot 1938 (Approved Lists 1980)

	Synonym	Clostridium absonum
	Synonym	Clostridium sardiniensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1178]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #1178]

Culture medium growth

[Ref.: #1178]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1178]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1178]			growth	37 °C

[Ref.: #1178]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1178]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.735

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB161368 (>99% sequence identity) for Clostridium baratii from Microbeatlas

Aquatic Samples	927
Soil Samples	585
Animal Samples	10123
Plant Samples	218
Total Samples	11853

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1178]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1178]	Clostridium sardiniense gene for 16S rRNA, strain:DSM 2632, sub_clone:c1	AB161367	1519	ENA	29369 tax ID
[Ref.: #20218]	Clostridium sardiniense gene for 16S rRNA, strain:DSM 2632, sub_clone:c2	AB161368	1519	ENA	29369 tax ID	*
[Ref.: #20218]	Clostridium sardiniense 16S rRNA gene, strain DSM 2632	X73446	1510	ENA	29369 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium sardiniense DSM 2632	GCA_016907995	contig	GenBank	29369 tax ID	*
[Ref.: #66792]	Clostridium sardiniense strain DSM 2632	29369.9	wgs	PATRIC	29369 tax ID	*
[Ref.: #66792]	Clostridium sardiniense DSM 2632	2901040167	draft	JGI IMG/M	29369 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium sardiniense strain DSM 2632 PATRIC: 29369.9
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sardiniense strain DSM 2632 PATRIC: 29369.9
[Ref.: #69480]	gram-positive	yes	86.744	no
[Ref.: #69480]	anaerobic	yes	96.911	yes
[Ref.: #69480]	halophile	no	87.655	no
[Ref.: #69480]	spore-forming	yes	92.26	no
[Ref.: #69480]	glucose-util	yes	89.676	no
[Ref.: #69480]	motile	yes	73.437	no
[Ref.: #69480]	aerobic	no	96.151	yes
[Ref.: #69480]	thermophile	no	96.269	yes
[Ref.: #69480]	flagellated	no	57.376	no
[Ref.: #69480]	glucose-ferment	yes	61.967	no

Availability in culture collections External links

[Ref.: #1178]

Culture collection no.

DSM 2632, ATCC 33455, VPI 2971

[Ref.: #72191]

SI-ID 40504

References

#1178

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2632

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72191

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40504.1 )

* These data were automatically processed and therefore are not curated

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Clostridium sardiniense strain DSM 2632

Clostridium sardiniense strain DSM 2632

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