Clostridium ramosum (CCUG 24038, DSM 1402, ATCC 25582)

Name: Clostridium ramosum (CCUG 24038, DSM 1402, ATCC 25582)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2653

Type strain

Strain Designation 113-I

Culture col. no. CCUG 24038 DSM 1402 ATCC 25582 NCIB 10673 VPI 0427 6 more

NCBI tax ID(s) 445974 1547

Special Collections DSMZ CCUG JCM KCTC

History DSMZ <- ATCC; ATCC 25582 <- W. E. C. Moore; VPI 0427 <- A. R. Prevot; 113-I (Ramibacterium ramosum) JCM <-- ATCC 25582 <-- W. E. C. Moore VPI 0427 <-- A. R. Prévot 113-1 ("Ramibacterium ramosum").

Links

Clostridium ramosum 113-I is an anaerobe bacterium of the family Clostridiaceae.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38603

ATCC 25582,CCUG 24038,DSM 1402,NCIB 10673,JCM 1298,CCRC 14518,NCIMB 10673,NCTC 11812,KCTC 3323,BCRC 14518,VTT E-062946

@ref 20215

Last LPSN update 2026-05-29 08:25:31

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium ramosum

Full scientific name Clostridium ramosum (Veillon and Zuber 1898) Holdeman et al. 1971 (Approved Lists 1980)

Synonyms (3)

Thomasclavelia ramosa
"Erysipelatoclostridium ramosum"
"Bacillus ramosus"

BacDive ID	Other strains from **Clostridium ramosum** (8)	Type strain
148490	C. ramosum CCUG 35540
148608	C. ramosum CCUG 35705
150967	C. ramosum CCUG 42893
151816	C. ramosum CCUG 44972
151840	C. ramosum CCUG 45030
152520	C. ramosum CCUG 46995
154479	C. ramosum CCUG 53777
165123	C. ramosum JCM 5235, ATCC 13937, NCTC 10474

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
489	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
489	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Deionized water

Culture temp

@ref	Growth	Type	Temperature (°C)
489	positive	growth	37
47909	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
489	anaerobe
47909	anaerobe
125439	facultative anaerobe	98.521

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68367	17057 ChEBI	cellobiose	+	builds acid from	from API 20A
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	+	builds acid from	from API 20A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	-	builds acid from	from API 20A
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	-	builds acid from	from API 20A
68367	62345 ChEBI	L-rhamnose	-	builds acid from	from API 20A
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68367	16634 ChEBI	raffinose	+	builds acid from	from API 20A
68367	17814 ChEBI	salicin	+	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
68367	17992 ChEBI	sucrose	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	+	builds acid from	from API 20A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68367	gelatinase	-		from API 20A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
489	-	-	+	+	+	+	+	+	-	-	-	+	-	+	+	-	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AB595128 (>99% sequence identity) for Erysipelatoclostridium ramosum subclade from Microbeatlas

Aquatic Samples	2108
Soil Samples	626
Animal Samples	103847
Plant Samples	377
Total Samples	106958

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
489	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1413169v1 assembly for Thomasclavelia ramosa DSM 1402	complete	GCA_014131695	445974.19		445974	99.31
124043	ASM1602713v1 assembly for Thomasclavelia ramosa FDAARGOS_906	complete	GCA_016027135	1547.129		1547	99.31
67770	ASM15448v1 assembly for Thomasclavelia ramosa DSM 1402	scaffold	GCA_000154485	445974.6	641736198	445974	72.61

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	C.ramosum 16S ribosomal RNA small subunit	M23731	1530	1547
20218	Clostridium ramosum DSM 1402 16S ribosomal RNA gene, partial sequence	HM245949	829	445974
20218	Clostridium ramosum strain DSM 1402 16S ribosomal RNA gene, partial sequence	HQ012012	927	445974
20218	Clostridium ramosum 16S rRNA gene, strain DSM 1402	X73440	1526	445974
489	Clostridium ramosum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1298	AB595128	1488	1547

GC content

@ref	GC-content (mol%)	Method
489	31.4	sequence analysis
67770	26	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1602713v1 assembly for Thomasclavelia ramosa FDAARGOS_906
BV-BRC: 1547.129

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.52	no
125439	gram_stain	BacteriaNetⓘ	positive	76.40	no
125439	motility	BacteriaNetⓘ	yes	69.43	no
125439	spore_formation	BacteriaNetⓘ	yes	71.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Erysipelatoclostridium ramosum DSM 1402 DSM 1402
NCBI: GCA_014131695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.77	no
125438	anaerobic	anaerobicⓘ	yes	87.05	no
125438	aerobic	aerobicⓘ	no	98.75	no
125438	spore-forming	spore-formingⓘ	no	58.27	no
125438	thermophilic	thermophileⓘ	no	93.01	yes
125438	flagellated	motile2+ⓘ	no	80.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Clostridium cocleatum, Clostridium ramosum, Clostridium spiroforme and Clostridium saccharogumia as Thomasclavelia cocleata gen. nov., comb. nov., Thomasclavelia ramosa comb. nov., gen. nov., Thomasclavelia spiroformis comb. nov. and Thomasclavelia saccharogumia comb. nov.	Lawson PA, Saavedra Perez L, Sankaranarayanan K.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005694	2023
	Bacterial microcompartments and energy metabolism drive gut colonization by Bilophila wadsworthia	Sayavedra L, Yasir M, Goldson A, Brion A, Le Gall G, Moreno-Gonzalez M, Altera A, Paxhia M, Warren M, Savva G, Turner A, Beraza N, Narbad A.	Nat Commun		2025
	Chemical analysis of the Alphaproteobacterium strain MOLA1416 associated with the marine lichen Lichina pygmaea.	Parrot D, Intertaglia L, Jehan P, Grube M, Suzuki MT, Tomasi S.	Phytochemistry	10.1016/j.phytochem.2017.10.005	2018
Genetics	Effect of minocycline, methyl prednisolone, or combination treatment on the colonic bacterial population in a state of colonic inflammation using the murine dextran sulfate sodium model.	Khajah MA, Hawai S.	Microb Cell Fact	10.1186/s12934-023-02242-8	2023
Genetics	Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes.	Galperin MY, Yutin N, Wolf YI, Vera Alvarez R, Koonin EV.	J Bacteriol	10.1128/jb.00079-22	2022
	Association of germ-free mice with a simplified human intestinal microbiota results in a shortened intestine.	Slezak K, Krupova Z, Rabot S, Loh G, Levenez F, Descamps A, Lepage P, Dore J, Bellier S, Blaut M.	Gut Microbes	10.4161/gmic.28203	2014
Pathogenicity	Akkermansia muciniphila strain ATCC BAA-835 does not promote short-term intestinal inflammation in gnotobiotic interleukin-10-deficient mice.	Ring C, Klopfleisch R, Dahlke K, Basic M, Bleich A, Blaut M.	Gut Microbes	10.1080/19490976.2018.1511663	2019
Metabolism	Clostridium ramosum regulates enterochromaffin cell development and serotonin release.	Mandic AD, Woting A, Jaenicke T, Sander A, Sabrowski W, Rolle-Kampcyk U, von Bergen M, Blaut M.	Sci Rep	10.1038/s41598-018-38018-z	2019
Metabolism	Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models.	Woting A, Pfeiffer N, Loh G, Klaus S, Blaut M.	mBio	10.1128/mbio.01530-14	2014
	Alleviation of high fat diet-induced obesity by oligofructose in gnotobiotic mice is independent of presence of Bifidobacterium longum.	Woting A, Pfeiffer N, Hanske L, Loh G, Klaus S, Blaut M.	Mol Nutr Food Res	10.1002/mnfr.201500249	2015
	Microbial co-habitation and lateral gene transfer: what transposases can tell us.	Hooper SD, Mavromatis K, Kyrpides NC.	Genome Biol	10.1186/gb-2009-10-4-r45	2009
Phylogeny	Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.	Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.	Appl Environ Microbiol	10.1128/aem.00380-09	2009
Phylogeny	Thomasclavelia ramosa and alcohol-related hepatocellular carcinoma: a microbial culturomics study.	Magdy Wasfy R, Abdoulaye A, Borentain P, Mbaye B, Tidjani Alou M, Caputo A, Andrieu C, Mottola G, Levasseur A, Million M, Gerolami R.	Gut Pathog	10.1186/s13099-025-00703-6	2025
Genetics	Altered gut microbiota in erectile dysfunction patients: a pilot study.	Su Q, Wang K, Luo Y, Tang Q.	Front Microbiol	10.3389/fmicb.2025.1530014	2025
	Limosilactobacillus fermentum, Lactococcus lactis and Thomasclavelia ramosa are enriched and Methanobrevibacter smithii is depleted in patients with non-alcoholic steatohepatitis.	Mbaye B, Wasfy RM, Alou MT, Borentain P, Andrieu C, Caputo A, Raoult D, Gerolami R, Million M.	Microb Pathog	10.1016/j.micpath.2023.106160	2023
Genetics	Limitations of MALDI-TOF MS in identifying anaerobic bacteremia: challenges in polymicrobial infections and the role of whole-genome sequencing.	Hosoda T, Suzuki M, Matsuno T, Matsui K, Ohyama K, Doi Y.	Microbiol Spectr	10.1128/spectrum.01014-25	2025
	Biochemical and structural characterization of the human gut microbiome metallopeptidase IgAse provides insight into its unique specificity for the Fab' region of IgA1 and IgA2.	Ramirez-Larrota JS, Juyoux P, Guerra P, Eckhard U, Gomis-Ruth FX.	PLoS Pathog	10.1371/journal.ppat.1013292	2025
	Gut microbiome dynamics and functional shifts in healthy aging: insights from a metagenomic study.	Ai X, Huang C, Liu Q, Duan R, Ma X, Li L, Shu Z, Miao Y, Shen H, Lv Y, Jiang Z, Luo H, Long Z.	Front Microbiol	10.3389/fmicb.2025.1629811	2025
Phylogeny	Culture-based characterization of gut microbiota in inflammatory bowel disease.	Park H, Yeo S, Lee T, Han Y, Ryu CB, Huh CS.	Front Microbiol	10.3389/fmicb.2025.1538620	2025
	Co-Colonization of Non-difficile Clostridial Species in Antibiotic-Associated Diarrhea Caused by Clostridioides difficile.	Salas-Trevino D, Flores-Trevino S, Cisneros-Rendon C, Dominguez-Rivera CV, Camacho-Ortiz A.	Antibiotics (Basel)	10.3390/antibiotics14040397	2025
Metabolism	A Low-Gluten Diet Reduces the Abundance of Potentially Beneficial Bacteria in Healthy Adult Gut Microbiota	Delmas E, Bingula R, Del'homme C, Meunier N, Caille A, Lyon-Belgy N, Richard R, Do Couto M, Wittrant Y, Bernalier-Donadille A.	Nutrients		2025
	Optogenetics-integrated gut organ culture system connects enteric neurons dynamics and gut homeostasis.	Naim G, Romano-Zadaka H, Amidror S, Jessula Levy D, Cohen A, Sochen C, Gilberg H, Farah N, Rudenko V, Yarden Y, Feng M, Tsentsarevsky R, Brodie Z, Reich Y, Simon A, Toister E, Shoval I, Armon L, Schiller M, Mandel Y, Biton M, Yissachar N.	Nat Commun	10.1038/s41467-025-64995-7	2025
	Molecular basis of Fab-dependent IgA antibody recognition by gut-bacterial metallopeptidases.	Marquez-Monino MA, Martinez Gascuena A, Azzam T, Persson A, Manzanares-Gomez A, Aguillo-Urarte M, Brown TT, Montero-Sagarminaga A, Lood R, Naegeli A, Connell SR, Sastre DE, Sundberg EJ, Trastoy B.	EMBO J	10.1038/s44318-025-00518-w	2025
Genetics	The microbiome-restorative potential of ibezapolstat for the treatment of Clostridioides difficile infection is predicted through variant PolC-type DNA polymerase III in Lachnospiraceae and Oscillospiraceae.	McPherson JK, Hurdle JG, Baker ML, Hussain T, Kumar A, Garey KW.	Antimicrob Agents Chemother	10.1128/aac.01679-24	2025
	Non-stochastic reassembly of a metabolically cohesive gut consortium shaped by N-acetyl-lactosamine-enriched fibers.	Moore M, Whittington HD, Knickmeyer R, Azcarate-Peril MA, Bruno-Barcena JM.	Gut Microbes	10.1080/19490976.2024.2440120	2025
Genetics	Coupling culturomics and metagenomics sequencing to characterize the gut microbiome of patients with cancer treated with immune checkpoint inhibitors.	Diop K, Mbaye B, Nili S, Filin A, Benlaifaoui M, Malo J, Renaud AS, Belkaid W, Hunter S, Messaoudene M, Lee KA, Elkrief A, Routy B.	Gut Pathog	10.1186/s13099-025-00694-4	2025
	Seeding and feeding: nutrition and birth-associated exposures shape gut microbiome assembly in breastfed infants.	Stinson LF, Norrish I, Mhembere F, Cheema AS, Mullally CA, Payne MS, Geddes DT.	Gut Microbes	10.1080/19490976.2025.2557981	2025
Metabolism	Coenzyme A metabolism: a key driver of gut microbiota dynamics and metabolic profiles.	Bottcher J, Sibon OCM, El Aidy S.	FEMS Microbiol Rev	10.1093/femsre/fuaf051	2025
	In vitro activity of fidaxomicin and combinations of fidaxomicin with other antibiotics against Clostridium perfringens strains isolated from dogs and cats.	Alvarez-Perez S, Anega B, Blanco JL, Hernandez M, Garcia ME.	BMC Vet Res	10.1186/s12917-023-03801-2	2023
	Food colorant brilliant blue causes persistent functional and structural changes in an in vitro simplified microbiota model system.	Castaneda-Monsalve V, Haange SB, Frohlich LF, Fu Q, Rolle-Kampczyk U, von Bergen M, Jehmlich N.	ISME Commun	10.1093/ismeco/ycaf050	2025
Phylogeny	Microbiota analysis of perimenopausal women experiencing recurrent vaginitis in conjunction with urinary tract infection.	Bi Y, Wang Y, Li W, Chen Y, Qin J, Zheng H.	BMC Microbiol	10.1186/s12866-024-03709-3	2025
	Increased fecal ethanol and enriched ethanol-producing gut bacteria Limosilactobacillus fermentum, Enterocloster bolteae, Mediterraneibacter gnavus and Streptococcus mutans in nonalcoholic steatohepatitis.	Mbaye B, Magdy Wasfy R, Borentain P, Tidjani Alou M, Mottola G, Bossi V, Caputo A, Gerolami R, Million M.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1279354	2023
	Serotypes, Antimicrobial Susceptibility, and Potential Mechanisms of Resistance Gene Transfer in Erysipelothrix rhusiopathiae Strains from Waterfowl in Poland.	Dec M, Nowak T, Webster J, Wodz K.	Int J Mol Sci	10.3390/ijms252212192	2024
	Proton-pump inhibitors increase C. difficile infection risk by altering pH rather than by affecting the gut microbiome based on a bioreactor model.	Schumacher J, Muller P, Sulzer J, Faber F, Molitor B, Maier L.	Gut Microbes	10.1080/19490976.2025.2519697	2025
	Fasting elicits gut microbiome signature changes that extend to type 1 diabetes patients	Graef F, Berger B, Bahr L, Stange R, Michalsen A, Paul F, Vallance B, Jacobson K.	Front Endocrinol (Lausanne)		2025
	Microbiota modulate immune cell populations and drive dynamic structural changes in gut-associated lymphoid tissue	Jan P, Nikola M, Liliana T, Karolina K, Valeria G, Zdenek Z, Tomas H, Anna M, Dagmar S, Martin S, Marianne B, Jan C.	Gut microbes		2025
	Oat Beta-Glucans Modulate the Gut Microbiome, Barrier Function, and Immune Responses in an In Vivo Model of Early-Stage Colorectal Cancer.	Guzowska M, Dziendzikowska K, Kopiasz L, Gajewska M, Wilczak J, Harasym J, Czerwinska M, Gromadzka-Ostrowska J.	Int J Mol Sci	10.3390/ijms252413586	2024
	Identification and distribution of new candidate T6SS effectors encoded in Salmonella Pathogenicity Island 6.	Blondel CJ, Amaya FA, Bustamante P, Santiviago CA, Pezoa D.	Front Microbiol	10.3389/fmicb.2023.1252344	2023
	High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study	Castaneda-Monsalve V, Frohlich L, Haange S, Homsi M, Rolle-Kampczyk U, Fu Q, von Bergen M, Jehmlich N.	Front Microbiol		2024
Genetics	Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn's disease.	Hacker D, Siebert K, Smith BJ, Kohler N, Riva A, Mahapatra A, Heimes H, Nie J, Metwaly A, Holz H, Manz Q, De Zen F, Heetmeyer J, Socas K, Le Thi G, Meng C, Kleigrewe K, Pauling JK, Neuhaus K, List M, Pollard KS, Schwerd T, Haller D.	Cell Host Microbe	10.1016/j.chom.2024.10.001	2024
Phylogeny	Bacteriostatic effect of orally administered bovine lactoferrin on proliferation of Clostridium species in the gut of mice fed bovine milk.	Teraguchi S, Shin K, Ozawa K, Nakamura S, Fukuwatari Y, Tsuyuki S, Namihira H, Shimamura S	Appl Environ Microbiol	10.1128/aem.61.2.501-506.1995	1995
Phylogeny	Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov.	Mourembou G, Yasir M, Azhar EI, Lagier JC, Bibi F, Jiman-Fatani AA, Helmy N, Robert C, Rathored J, Fournier PE, Raoult D, Million M.	OMICS	10.1089/omi.2015.0143	2015
Phylogeny	Tannockella kyphosi gen. nov., sp. nov., a member of the family Erysipelotrichaceae, isolated from the hindgut of the marine herbivorous fish Kyphosus sydneyanus.	Pardesi B, Roberton AM, Wollmuth EM, Angert ER, Rosendale DI, White WL, Clements KD	Int J Syst Evol Microbiol	10.1099/ijsem.0.005374	2022

References

#489	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1402
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#47909	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24038
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium ramosum (CCUG 24038, DSM 1402, ATCC 25582)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20A

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014131695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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