Name: Ruminiclostridium papyrosolvens DSM 2782
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2622

Type strain:

Species: Ruminiclostridium papyrosolvens

Culture col. no.: DSM 2782, ATCC 35413, NCIMB 11394

Strain history: <- NCIB; NCIMB 11394 <- R. H. Madden, Aberdeen University, Aberdeen, United Kingdom

NCBI tax ID(s): 588581 (strain), 29362 (species)

SI-ID 41062

ATCC 35413, NCIB 11394, NCIMB 11394, CECT 747, CCRC 14496, BCRC 14496, DSM 2782

Section

Ruminiclostridium papyrosolvens DSM 2782 is an anaerobe, mesophilic bacterium that was isolated from intertidal mud.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Ruminiclostridium*
	Species	**Ruminiclostridium papyrosolvens**
	Full Scientific Name (LPSN)	Ruminiclostridium papyrosolvens (Madden et al. 1982) Zhang et al. 2018

Synonym

Clostridium papyrosolvens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1224]

Culture medium

RUMINICLOSTRIDIUM PAPYROSOLVENS MEDIUM (DSMZ Medium 289)

[Ref.: #1224]

Culture medium growth

[Ref.: #1224]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1224]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1224]			growth	25 °C

[Ref.: #1224]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1224]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1224]	Sample type/isolated from	intertidal mud
[Ref.: #1224]	Geographic location (country and/or sea, region)	Scotland, Aberdeenshire, Don river
[Ref.: #1224]	Country	United Kingdom
[Ref.: #1224]	Country ISO 3 Code	GBR
[Ref.: #1224]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1224]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1224]	C.papyrosolvens gene for 16S ribosomal RNA	X71852	1514	ENA	588581 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ruminiclostridium papyrosolvens DSM 2782	GCA_000175795	contig	GenBank	588581 tax ID	*
[Ref.: #66792]	Clostridium papyrosolvens DSM 2782	588581.3	wgs	PATRIC	588581 tax ID	*
[Ref.: #66792]	Ruminiclostridium papyrosolvens DSM 2782	645058763	complete	JGI IMG/M	588581 tax ID	*
[Ref.: #66792]	Ruminiclostridium papyrosolvens DSM 2782	GCA_029318685	complete	GenBank	588581 tax ID	*

[Ref.: #1224]

GC-content

30.0 mol%

Availability in culture collections External links

[Ref.: #1224]

Culture collection no.

DSM 2782, ATCC 35413, NCIMB 11394

[Ref.: #72153]

SI-ID 41062

Literature:

	Title	Authors	Journal	DOI	Year
	Function analysis of 5'-UTR of the cellulosomal xyl-doc cluster in Clostridium papyrosolvens.	Zou X, Ren Z, Wang N, Cheng Y, Jiang Y, Wang Y, Xu C	Biotechnol Biofuels	10.1186/s13068-018-1040-0	2018	*

References

#1224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2782

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72153

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41062.1 )

* These data were automatically processed and therefore are not curated

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