Name: Clostridium oceanicum DSM 1290
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2620

Type strain:

Species: Clostridium oceanicum

Culture col. no.: DSM 1290, ATCC 25647, NCIMB 10625, VPI 3082, JCM 1407, BCRC 14482, LMG 3287

Strain history: ATCC 25647 <-- L. DS. Smith VPI 3082.

NCBI tax ID(s): 1543 (species)

SI-ID 1957

LMG 3287, ATCC 25647, DSM 1290, NCIB 10625, JCM 1407, CCRC 14482, NCIMB 10625, BCRC 14482

Other strains from Clostridium oceanicum

C. oceanicum STH00034(ZIMET), HKI 0034

Section

Clostridium oceanicum DSM 1290 is an anaerobe, mesophilic bacterium that was isolated from marine sediment.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium oceanicum**
	Full Scientific Name (LPSN)	Clostridium oceanicum Smith 1970 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #610]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #610]

Culture medium growth

[Ref.: #610]

Culture medium link

Medium recipe at MediaDive

[Ref.: #610]

Culture medium composition

expand / minimize

[Ref.: #610]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #610]

Culture medium growth

[Ref.: #610]

Culture medium link

Medium recipe at MediaDive

[Ref.: #610]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #610]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #610]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #610]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #610]	Sample type/isolated from	marine sediment
[Ref.: #610]	Geographic location (country and/or sea, region)	Atlantic Ocean

[Ref.: #67770]	Sample type/isolated from	Marine sediment
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC007108 (>99% sequence identity) for Clostridium oceanicum subclade from Microbeatlas

Aquatic Samples	1897
Soil Samples	156
Animal Samples	648
Plant Samples	61
Total Samples	2762

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #610]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #610]	Clostridium oceanicum partial 16S rRNA gene, type strain DSM 1290T, clone 1	FR749923	1560	ENA	1543 tax ID
[Ref.: #610]	Clostridium oceanicum partial 16S rRNA gene, type strain DSM 1290T, clone 2	FR749924	1560	ENA	1543 tax ID
[Ref.: #610]	Clostridium oceanicum partial 16S rRNA gene, type strain DSM 1290T, clone 3	FR749925	1620	ENA	1543 tax ID
[Ref.: #610]	Clostridium oceanicum partial 16S rRNA gene, type strain DSM 1290T, clone 4	FR749926	1597	ENA	1543 tax ID
[Ref.: #610]	Clostridium oceanicum partial 16S rRNA gene, type strain DSM 1290T, clone 5	FR749927	1560	ENA	1543 tax ID
[Ref.: #67770]	Clostridium oceanicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1407	LC007108	1473	ENA	1543 tax ID
[Ref.: #20218]	Clostridium oceanicum 16S ribosomal RNA	M59101	1460	ENA	1543 tax ID	*
[Ref.: #20218]	Clostridium oceanicum strain ATCC 25647 16S ribosomal RNA gene, partial sequence	DQ911254	318	ENA	1543 tax ID	*

[Ref.: #610]	GC-content	23.0 mol%
[Ref.: #67770]	GC-content	23 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #610]

Culture collection no.

DSM 1290, ATCC 25647, NCIMB 10625, VPI 3082, JCM 1407, BCRC 14482, LMG 3287

[Ref.: #72151]

SI-ID 1957

References

#610	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1290

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72151

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1957.1 )

* These data were automatically processed and therefore are not curated

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