Clostridium malenominatum (DSM 1127, ATCC 25776, NCIB 10667)

Name: Clostridium malenominatum (DSM 1127, ATCC 25776, NCIB 10667)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2617

Type strain

Strain Designation 1503, Prévot, 1503, Prévot, Prévot 1503

Culture col. no. DSM 1127 ATCC 25776 NCIB 10667 Prevot 1503 VPI 2721 7 more

NCBI tax ID(s) 1539

Special Collections DSMZ JCM

History <- NCIB <- G. Hobbs ATCC 25776 <-- L. DS. Smith VPI 2721 <-- A. Prévot 1503.

Links

Clostridium malenominatum 1503 is an anaerobe, mesophilic prokaryote of the family Clostridiaceae.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297055

ATCC 25776,DSM 1127,NCIB 10667,JCM 1405,CCRC 14483,NCIMB 10667,BCRC 14483

@ref 20215

Last LPSN update 2026-02-09 11:18:19

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium malenominatum

Full scientific name Clostridium malenominatum (Weinberg et al. 1937) Spray 1948 (Approved Lists 1980)

Synonyms (1)

"Bacillus malenominatus"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
571	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
571	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

571

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence LC007107 (>99% sequence identity) for Clostridium malenominatum subclade from Microbeatlas

Aquatic Samples	1020
Soil Samples	923
Animal Samples	552
Plant Samples	187
Total Samples	2682

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
571	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952136v1 assembly for Clostridium malenominatum JCM 1405	scaffold	GCA_039521365	1539	73.51

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Clostridium malenominatum strain ATCC 25776 16S ribosomal RNA gene, partial sequence	DQ911264	324	1539
20218	Clostridium malenominatum 16S ribosomal RNA	M59099	1460	1539
571	Clostridium malenominatum partial 16S rRNA gene, type strain DSM 1127T	FR749893	1498	1539
67770	Clostridium malenominatum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1405	LC007107	1472	1539

GC content

@ref	GC-content (mol%)	Method
571	28.0
67770	28	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.	Kent AD, Smith DJ, Benson BJ, Triplett EW.	Appl Environ Microbiol	10.1128/aem.69.11.6768-6776.2003	2003
	Methylotrophic methanogens and bacteria synergistically demethylate dimethylarsenate in paddy soil and alleviate rice straighthead disease.	Chen C, Li L, Wang Y, Dong X, Zhao FJ.	ISME J	10.1038/s41396-023-01498-7	2023
	Detection of necrotic enteritis risk through non-invasive monitoring of Clostridium perfringens in feces.	Shidore T, Buhr DL, Morano J, Dhlakama T, Baxter M, Lum J, Barton JT, Ritch MD, Westgate B, Moscato ZM, Fiandaca MJ, Sevostyanova A, Kiebler C, Zwilling MF, Copley C, Kiss MM.	Poult Sci	10.1016/j.psj.2025.104809	2025
	Ultrastructure of a novel anaerobic gram-positive nonsporing rod from dental root canal.	Kerosuo E, Haapasalo M, Lounatmaa K, Ranta H, Ranta K.	Scand J Dent Res	10.1111/j.1600-0722.1988.tb01407.x	1988
Phylogeny	Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota.	Bartosch S, Fite A, Macfarlane GT, McMurdo ME.	Appl Environ Microbiol	10.1128/aem.70.6.3575-3581.2004	2004
Phylogeny	Clostridium pascui sp. nov., a new glutamate-fermenting sporeformer from a pasture in Pakistan.	Wilde E, Collins MD, Hippe H.	Int J Syst Bacteriol	10.1099/00207713-47-1-164	1997

References

#571	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1127
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium malenominatum (DSM 1127, ATCC 25776, NCIB 10667)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039521365

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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