Clostridium magnum (DSM 2767, ATCC 49199, KCTC 15177)

Name: Clostridium magnum (DSM 2767, ATCC 49199, KCTC 15177)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2615

Type strain

Strain Designation WoBdP1

Culture col. no. DSM 2767 ATCC 49199 KCTC 15177 WoBdP1

NCBI tax ID(s) 1121326 33954

Special Collections DSMZ KCTC

History <- B. Schink, WoBdP1

Links

Clostridium magnum WoBdP1 is an anaerobe bacterium that was isolated from freshwater mud.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42349

KCTC 15177,ATCC 49199,DSM 2767,CCUG43302,BCRC 14469,CCRC 14469

@ref 20215

Last LPSN update 2026-02-09 11:18:19

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium magnum

Full scientific name Clostridium magnum Schink 1984

BacDive ID	Other strains from **Clostridium magnum** (1)	Type strain
2616	C. magnum Thai5A-GV, DSM 13769

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1214	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1214	positive	growth	30

Physiology and metabolism

Oxygen tolerance

1214

Oxygen toleranceanaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	cardiolipin biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	100	13 of 13
66794	lactate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	isoleucine metabolism	100	8 of 8
66794	suberin monomers biosynthesis	100	2 of 2
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	methionine metabolism	84.62	22 of 26
66794	urea cycle	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	alanine metabolism	82.76	24 of 29
66794	vitamin B12 metabolism	82.35	28 of 34
66794	pyrimidine metabolism	82.22	37 of 45
66794	purine metabolism	80.85	76 of 94
66794	starch degradation	80	8 of 10
66794	myo-inositol biosynthesis	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	lipoate biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	propanol degradation	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	oxidative phosphorylation	68.13	62 of 91
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	methane metabolism	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	tryptophan metabolism	65.79	25 of 38
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	lysine metabolism	64.29	27 of 42
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	ketogluconate metabolism	62.5	5 of 8
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	sulfate reduction	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	degradation of sugar acids	60	15 of 25
66794	3-chlorocatechol degradation	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	nitrate assimilation	55.56	5 of 9
66794	leucine metabolism	53.85	7 of 13
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	kanosamine biosynthesis II	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	pentose phosphate pathway	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	polyamine pathway	43.48	10 of 23
66794	tyrosine metabolism	42.86	6 of 14
66794	creatinine degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	carotenoid biosynthesis	27.27	6 of 22
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1214	freshwater mud	Konstanz	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence X77835 (>99% sequence identity) for Clostridium magnum subclade from Microbeatlas

Aquatic Samples	70
Soil Samples	137
Animal Samples	28
Plant Samples	10
Total Samples	245

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1214	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Clostridium magnum WoBdP1, DSM 2767	complete			2639762517	1121326	82.97
66792	ASM162387v1 assembly for Clostridium magnum DSM 2767	contig	GCA_001623875	1121326.3	2744054832	1121326	68.37
66792	IMG-taxon 2585428069 annotated assembly for Clostridium magnum DSM 2767	scaffold	GCA_900129955	1121326.7	2585428069	1121326	51.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Clostridium magnum strain DSM 2767 16S ribosomal RNA gene, partial sequence	DQ911269	320		33954
1214	Clostridium magnum 16S rRNA gene, strain DSM 2767	X77835	1387		1121326

GC content

1214

GC-content (mol%)29.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium magnum DSM 2767
NCBI: GCA_900129955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.20	no
125439	gram_stain	BacteriaNetⓘ	variable	74.70	no
125439	motility	BacteriaNetⓘ	yes	82.60	no
125439	spore_formation	BacteriaNetⓘ	yes	84.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium magnum DSM 2767 DSM 2767
NCBI: GCA_900129955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.39	no
125438	anaerobic	anaerobicⓘ	yes	84.44	yes
125438	aerobic	aerobicⓘ	no	91.54	yes
125438	spore-forming	spore-formingⓘ	yes	80.39	no
125438	thermophilic	thermophileⓘ	no	93.51	yes
125438	flagellated	motile2+ⓘ	yes	82.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Energy conservation under extreme energy limitation: the role of cytochromes and quinones in acetogenic bacteria.	Rosenbaum FP, Muller V.	Extremophiles	10.1007/s00792-021-01241-0	2021
Metabolism	Bacterial steroid-17,20-desmolase is a taxonomically rare enzymatic pathway that converts prednisone to 1,4-androstanediene-3,11,17-trione, a metabolite that causes proliferation of prostate cancer cells.	Ly LK, Rowles JL, Paul HM, Alves JMP, Yemm C, Wolf PM, Devendran S, Hudson ME, Morris DJ, Erdman JW, Ridlon JM.	J Steroid Biochem Mol Biol	10.1016/j.jsbmb.2019.105567	2020
	Genetic Evidence Reveals the Indispensable Role of the rseC Gene for Autotrophy and the Importance of a Functional Electron Balance for Nitrate Reduction in Clostridium ljungdahlii.	Klask CM, Jager B, Casini I, Angenent LT, Molitor B.	Front Microbiol	10.3389/fmicb.2022.887578	2022
Genetics	Hitherto unknown [Fe-Fe]-hydrogenase gene diversity in anaerobes and anoxic enrichments from a moderately acidic fen.	Schmidt O, Drake HL, Horn MA.	Appl Environ Microbiol	10.1128/aem.02895-09	2010
Metabolism	Carbon isotope fractionation of 11 acetogenic strains grown on H2 and CO2.	Blaser MB, Dreisbach LK, Conrad R.	Appl Environ Microbiol	10.1128/aem.03203-12	2013
Metabolism	The Sporomusa type Nfn is a novel type of electron-bifurcating transhydrogenase that links the redox pools in acetogenic bacteria.	Kremp F, Roth J, Muller V.	Sci Rep	10.1038/s41598-020-71038-2	2020
Metabolism	Tolerance and metabolic response of acetogenic bacteria toward oxygen.	Karnholz A, Kusel K, Gossner A, Schramm A, Drake HL.	Appl Environ Microbiol	10.1128/aem.68.2.1005-1009.2002	2002
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018
Metabolism	Identification of novel autoinducer-2 receptors in Clostridia reveals plasticity in the binding site of the LsrB receptor family.	Torcato IM, Kasal MR, Brito PH, Miller ST, Xavier KB.	J Biol Chem	10.1074/jbc.ra118.006938	2019
Phylogeny	Presence of novel, potentially homoacetogenic bacteria in the rumen as determined by analysis of formyltetrahydrofolate synthetase sequences from ruminants.	Henderson G, Naylor GE, Leahy SC, Janssen PH.	Appl Environ Microbiol	10.1128/aem.02580-09	2010
Enzymology	Purification and characterization of acetoin:2,6-dichlorophenolindophenol oxidoreductase, dihydrolipoamide dehydrogenase, and dihydrolipoamide acetyltransferase of the Pelobacter carbinolicus acetoin dehydrogenase enzyme system.	Oppermann FB, Schmidt B, Steinbuchel A.	J Bacteriol	10.1128/jb.173.2.757-767.1991	1991
Metabolism	Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the sea grass Halodule wrightii.	Kusel K, Pinkart HC, Drake HL, Devereux R.	Appl Environ Microbiol	10.1128/aem.65.11.5117-5123.1999	1999
Genetics	Genome Sequence of the Autotrophic Acetogen Clostridium magnum DSM 2767.	Uhlig R, Poehlein A, Fischer RJ, Daniel R, Bahl H	Genome Announc	10.1128/genomeA.00464-16	2016
Phylogeny	Clostridium tanneri sp. nov., isolated from the faecal material of an alpaca.	Miller S, Hendry M, King J, Sankaranarayanan K, Lawson PA.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006372	2024
Metabolism	Clostridium kogasensis sp. nov., a novel member of the genus Clostridium, isolated from soil under a corroded gas pipeline.	Shin Y, Kang SS, Paek J, Jin TE, Song HS, Kim H, Park HM, Chang YH	Anaerobe	10.1016/j.anaerobe.2016.02.006	2016

References

#1214	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2767
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Clostridium magnum (DSM 2767, ATCC 49199, KCTC 15177)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001623875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media