Name: Clostridium leptum DSM 753
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2612

Type strain:

Species: Clostridium leptum

Culture col. no.: DSM 753, ATCC 29065, VPI T7-24-1

Strain history: <- W. E. C. Moore, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI T7-24-1

NCBI tax ID(s): 428125 (strain), 1535 (species)

SI-ID 39340

ATCC 29065, DSM 753, BCRC 14522, CCRC 14522, CCUG 48287, KCTC 5155, VTT E-021850

Other strains from Clostridium leptum

C. leptum H5_48, DSM 108256

Section

Clostridium leptum DSM 753 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faeces.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium leptum**
	Full Scientific Name (LPSN)	Clostridium leptum Moore et al. 1976 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #425]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #425]

Culture medium growth

[Ref.: #425]

Culture medium link

Medium recipe at MediaDive

[Ref.: #425]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #425]			growth	37 °C

[Ref.: #425]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #425]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.805

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #425]	Sample type/isolated from	human faeces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ305238 (>99% sequence identity) for [Clostridium] leptum subclade from Microbeatlas

Aquatic Samples	1257
Soil Samples	330
Animal Samples	71745
Plant Samples	201
Total Samples	73533

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #425]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #425]	Clostridium leptum 16S rRNA gene, strain DSM 753T	AJ305238	1505	ENA	428125 tax ID
[Ref.: #20218]	Clostridium leptum 16S ribosomal RNA	M59095	1465	ENA	1535 tax ID	*
[Ref.: #20218]	Clostridium limosum 16S ribosomal RNA	M59096	1458	ENA	1536 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	[Clostridium] leptum DSM 753	GCA_000154345	scaffold	GenBank	428125 tax ID	*
[Ref.: #66792]	[Clostridium] leptum DSM 753	GCA_002556665	contig	GenBank	428125 tax ID	*
[Ref.: #66792]	[Clostridium] leptum DSM 753	428125.17	wgs	PATRIC	428125 tax ID	*
[Ref.: #66792]	Clostridium leptum DSM 753	428125.8	wgs	PATRIC	428125 tax ID	*
[Ref.: #66792]	Clostridium leptum DSM 753	641380427	draft	JGI IMG/M	428125 tax ID	*
[Ref.: #66792]	Clostridium leptum DSM 753	2835065648	draft	JGI IMG/M	428125 tax ID	*

[Ref.: #425]

GC-content

51 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium leptum DSM 753 PATRIC: 428125.8
[Ref.: #69481]	spore-forming	yes	83	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Clostridium] leptum DSM 753 DSM 753 NCBI: GCA_000154345.1
[Ref.: #69480]	motile	no	92.988	no
[Ref.: #69480]	flagellated	no	98.225	no
[Ref.: #69480]	gram-positive	yes	90.928	no
[Ref.: #69480]	anaerobic	yes	99.541	yes
[Ref.: #69480]	aerobic	no	98.282	no
[Ref.: #69480]	halophile	no	92.182	no
[Ref.: #69480]	spore-forming	no	62.726	no
[Ref.: #69480]	thermophile	no	80.426	no
[Ref.: #69480]	glucose-util	yes	89.736	no
[Ref.: #69480]	glucose-ferment	yes	65.646	no

Availability in culture collections External links

[Ref.: #425]

Culture collection no.

DSM 753, ATCC 29065, VPI T7-24-1

[Ref.: #72143]

SI-ID 39340

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens.	Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR	Int J Syst Evol Microbiol	10.1099/ijsem.0.004283	2020	*
Pathogenicity	Effect of oligosaccharides on the adhesion of gut bacteria to human HT-29 cells.	Altamimi M, Abdelhay O, Rastall RA	Anaerobe	10.1016/j.anaerobe.2016.03.010	2016	*
Phylogeny	Caproiciproducens galactitolivorans gen. nov., sp. nov., a bacterium capable of producing caproic acid from galactitol, isolated from a wastewater treatment plant.	Kim BC, Seung Jeon B, Kim S, Kim H, Um Y, Sang BI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000665	2015	*

References

#425	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 753

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72143

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39340.1 )

* These data were automatically processed and therefore are not curated

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Clostridium leptum DSM 753

[Clostridium] leptum DSM 753 DSM 753

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