Aeromonas simiae (DSM 16559, CCUG 47378, CIP 107798)

Name: Aeromonas simiae (DSM 16559, CCUG 47378, CIP 107798)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 261

Type strain

Culture col. no. DSM 16559 CCUG 47378 CIP 107798 IBS S6874

NCBI tax ID(s) 218936

Special Collections DSMZ CCUG CIP Literature strains

Links

Aeromonas simiae DSM 16559 is a facultative anaerobe, chemoorganotroph, mesophilic prokaryote that was isolated from faeces of Macaca fascicularis .

Gram-negative motile rod-shaped facultative anaerobe chemoorganotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 131408

CCUG 47378,CIP 107798,LMG 22269,DSM 16559,CCM 7234,CIP 10778

@ref 20215

Last LPSN update 2025-12-16 09:46:49

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Aeromonas

Species Aeromonas simiae

Full scientific name Aeromonas simiae Harf-Monteil et al. 2004

BacDive ID	Other strains from **Aeromonas simiae** (1)	Type strain
136899	A. simiae CIP 107797, CCUG 47379, IBS S6652

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Flagellum arrangement	Confidence
23256	negative	rod-shaped	monotrichous, polar
122613	negative
125439	negative			99.4
125438				91.348
125438	negative			99.494

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6510	COLUMBIA BLOOD AGAR (DSMZ Medium 429)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
6510	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
40719	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122613	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6510	positive	growth	30	mesophilic
23256	positive	growth	42	thermophilic
23256	positive	optimum	30	mesophilic
40719	positive	growth	30	mesophilic
122613	positive	growth	30-41
122613	negative	growth	5
122613	negative	growth	10

Physiology and metabolism

Oxygen tolerance

122613

Oxygen tolerancefacultative anaerobe

Nutrition type

23256

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		99.5
125438		95.085

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23256	NaCl		maximum	6 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23256	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23256	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
23256	27613 ChEBI	amygdalin	-	builds acid from
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
23256	18305 ChEBI	arbutin	+	builds acid from
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
23256	17057 ChEBI	cellobiose	+	builds acid from
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
122613	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
23256	17108 ChEBI	D-arabinose	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23256	18333 ChEBI	D-arabitol	-	builds acid from
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
23256	15824 ChEBI	D-fructose	+	builds acid from
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
23256	28847 ChEBI	D-fucose	-	builds acid from
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
23256	17634 ChEBI	D-glucose	+	builds acid from
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
23256	62318 ChEBI	D-lyxose	-	builds acid from
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
23256	16024 ChEBI	D-mannose	+	builds acid from
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
23256	16443 ChEBI	D-tagatose	-	builds acid from
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23256	16551 ChEBI	D-trehalose	+	builds acid from
23256	65327 ChEBI	D-xylose	-	builds acid from
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
23256	17113 ChEBI	erythritol	-	builds acid from
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23256	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
23256	16813 ChEBI	galactitol	-	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23256	28260 ChEBI	galactose	+	builds acid from
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
23256	28066 ChEBI	gentiobiose	-	builds acid from
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
23256	24265 ChEBI	gluconate	+	builds acid from
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
122613	17234 ChEBI	glucose	+	fermentation
23256	17754 ChEBI	glycerol	+	builds acid from
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
23256	28087 ChEBI	glycogen	+	builds acid from
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
23256	15443 ChEBI	inulin	-	builds acid from
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23256	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
23256	65328 ChEBI	L-xylose	-	builds acid from
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23256	17716 ChEBI	lactose	-	builds acid from
122613	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
122613	15792 ChEBI	malonate	-	assimilation
23256	17306 ChEBI	maltose	+	builds acid from
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23256	29864 ChEBI	mannitol	-	builds acid from
122613	29864 ChEBI	mannitol	-	fermentation
23256	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23256	28053 ChEBI	melibiose	-	builds acid from
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
23256	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
23256	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
23256	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
23256	17268 ChEBI	myo-inositol	-	builds acid from
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
23256	506227 ChEBI	N-acetylglucosamine	+	builds acid from
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
23256	17632 ChEBI	nitrate	+	reduction
122613	17632 ChEBI	nitrate	+	reduction
122613	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23256	16634 ChEBI	raffinose	-	builds acid from
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
23256	26546 ChEBI	rhamnose	-	builds acid from
23256	15963 ChEBI	ribitol	-	builds acid from
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23256	33942 ChEBI	ribose	+	builds acid from
23256	17814 ChEBI	salicin	-	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
122613	132112 ChEBI	sodium thiosulfate	-	builds gas from
23256	30911 ChEBI	sorbitol	-	builds acid from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
23256	27922 ChEBI	sorbose	-	builds acid from
23256	28017 ChEBI	starch	+	builds acid from
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
23256	17992 ChEBI	sucrose	+	builds acid from
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
23256	32528 ChEBI	turanose	-	builds acid from
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
23256	17151 ChEBI	xylitol	-	builds acid from
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
122613		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
23256	28971	ampicillin
23256	3542	cephalothin
23256	73908	vibriostat	150 µg

Metabolite production

@ref	Chebi-ID	Metabolite
23256	15688 ChEBI	acetoin
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
122613	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
23256	15688 ChEBI	acetoin	-
122613	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
122613	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122613	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122613	amylase	+
23256	arginine dihydrolase	+	3.5.3.6
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
122613	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122613	caseinase	+	3.4.21.50
23256	catalase	+	1.11.1.6
122613	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23256	cytochrome oxidase	+	1.9.3.1
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
122613	DNase	+
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
122613	gelatinase	+
68368	gelatinase	+		from API 20E
122613	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122613	lipase	-
68382	lipase (C 14)	-		from API zym
23256	lysine decarboxylase	+	4.1.1.18
122613	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
23256	ornithine decarboxylase	-	4.1.1.17
122613	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
122613	oxidase	+
122613	phenylalanine ammonia-lyase	+	4.3.1.24
122613	protease	+
23256	pyrazinamidase	+	3.5.1.B15
68382	trypsin	-	3.4.21.4	from API zym
122613	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
122613	tween esterase	-
122613	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
6510	+	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122613	-	+	-	-	-	+	-	-	-	-	+	-	-	+	-	+	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122613	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122613	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date	Isolation date
6510	faeces of Macaca fascicularis (faeces)	Macaca fascicularis	Strasbourg	France	FRA	Europe
23256	faeces of a monkey (Macaca fascicularis) that was kept in the Centre for Primatology, Louis Pasteur University
57666	Monkey feces		Strasbourg	France	FRA	Europe	1999
122613	Animal, Monkey, feces		Strasbourg	France	FRA	Europe		1999

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6510	1	Risk group (German classification) According to TRBA 466
122613	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB7039 assembly for Aeromonas simiae CIP 107798	scaffold	GCA_000820125	218936.3	2648501404	218936	43.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Aeromonas simiae strain MDC 54 16S ribosomal RNA gene, partial sequence	GQ860945	1503		218936
6510	Aeromonas simiae partial 16S rRNA gene, type strain IBS S6874T	AJ536821	1452		218936

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aeromonas simiae CIP 107798
NCBI: GCA_000820125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	87.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	87.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aeromonas simiae CIP 107798
NCBI: GCA_000820125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	yes
125438	anaerobic	anaerobicⓘ	no	93.48	yes
125438	aerobic	aerobicⓘ	no	74.71	yes
125438	spore-forming	spore-formingⓘ	no	95.09	no
125438	thermophilic	thermophileⓘ	no	97.39	yes
125438	flagellated	motile2+ⓘ	yes	91.35	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	OXA-830, a Novel Chromosomally Encoded Extended-Spectrum Class D beta-Lactamase in Aeromonas simiae.	Chen Q, Zhou W, Qian C, Shen K, Zhu X, Zhou D, Sun Z, Lu W, Liu H, Li K, Xu T, Bao Q, Lu J.	Front Microbiol	10.3389/fmicb.2019.02732	2019
	Biocide-Resistant Escherichia coli ST540 Co-Harboring ESBL, dfrA14 Confers QnrS-Dependent Plasmid-Mediated Quinolone Resistance.	Bharathi SV, Rajamohan G.	Antibiotics (Basel)	10.3390/antibiotics11121724	2022
	Clonal relationship of tet(X4)-positive Escherichia coli ST761 isolates between animals and humans.	Zhai W, Wang T, Yang D, Zhang Q, Liang X, Liu Z, Sun C, Wu C, Liu D, Wang Y.	J Antimicrob Chemother	10.1093/jac/dkac175	2022
	First record of the rare species Aeromonas schubertii from mussels: phenotypic and genetic reevaluation of the species and a review of the literature.	Latif-Eugenin F, Beaz-Hidalgo R, Figueras MJ.	Arch Microbiol	10.1007/s00203-016-1189-5	2016
Phylogeny	Updated phylogeny of the genus Aeromonas.	Saavedra MJ, Figueras MJ, Martinez-Murcia AJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.64351-0	2006
Phylogeny	Genetic differentiation among isolates of Teredinibacter turnerae, a widely occurring intracellular endosymbiont of shipworms.	Altamia MA, Wood N, Fung JM, Dedrick S, Linton EW, Concepcion GP, Haygood MG, Distel DL.	Mol Ecol	10.1111/mec.12667	2014
	An Update on the Genus Aeromonas: Taxonomy, Epidemiology, and Pathogenicity.	Fernandez-Bravo A, Figueras MJ.	Microorganisms	10.3390/microorganisms8010129	2020
Phylogeny	Ribosomal multi-operon diversity: an original perspective on the genus Aeromonas.	Roger F, Lamy B, Jumas-Bilak E, Kodjo A, colBVH study group, Marchandin H.	PLoS One	10.1371/journal.pone.0046268	2012
Phylogeny	Phylogenetic identification of Aeromonas simiae from a pig, first isolate since species description.	Fontes MC, Saavedra MJ, Monera A, Martins C, Martinez-Murcia A	Vet Microbiol	10.1016/j.vetmic.2009.09.033	2009
Phylogeny	Aeromonas simiae sp. nov., isolated from monkey faeces.	Harf-Monteil C, Fleche AL, Riegel P, Prevost G, Bermond D, Grimont PAD, Monteil H	Int J Syst Evol Microbiol	10.1099/ijs.0.02786-0	2004

References

#6510	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16559
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23256	Colette Harf-Monteil, Anne Le Flèche, Philippe Riegel, Gilles Prévost, Delphine Bermond, Patrick A. D. Grimont, Henri Monteil: Aeromonas simiae sp. nov., isolated from monkey faeces. IJSEM 54: 481 - 485 2004 ( DOI 10.1099/ijs.0.02786-0 , PubMed 15023964 )
#40719	; Curators of the CIP;
#57666	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47378
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#122613	Collection of Institut Pasteur ; Curators of the CIP; CIP 107798
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aeromonas simiae (DSM 16559, CCUG 47378, CIP 107798)

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