Name: Enterocloster clostridioformis T90
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2569

Type strain:

Species: Enterocloster clostridioformis

Strain Designation: T90

Culture col. no.: DSM 933, ATCC 25537, CCUG 16791, NCTC 11224, CIP 104318, JCM 1291, NCIMB 11018, VPI 0316, BCRC 14545, CCM 6066, VTT E-052777

Strain history: C. Kaneuchi <-- ATCC 25537 <-- L. V. Holdeman VPI 0316 <-- M. P. Bryant.

NCBI tax ID(s): 1531 (species)

SI-ID 92923

ATCC 25537, CCUG 16791, DSM 933, JCM 1291, CCRC 14545, NCIMB 11018, NCTC 11224, CCM 6066, CIP 104318, BCRC 14545, VTT E-052777

Other strains from Enterocloster clostridioformis

E. clostridioformis YL32, DSM 26114
E. clostridioformis H4_30, DSM 108191

Section

Enterocloster clostridioformis T90 is an anaerobe, mesophilic bacterium that was isolated from calf rumen.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Enterocloster*
	Species	**Enterocloster clostridioformis**
	Full Scientific Name (LPSN)	Enterocloster clostridioformis (Burri and Ankersmit 1906) Haas and Blanchard 2020

	Synonym	"Bacterium* clostridiiforme"*
	Synonym	Clostridium clostridiiforme
	Synonym	"Bacteroides* clostridiiformis"*
	Synonym	Clostridium clostridioforme

Information on culture and growth conditions Culture and growth conditions

[Ref.: #471]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #471]

Culture medium growth

[Ref.: #471]

Culture medium link

Medium recipe at MediaDive

[Ref.: #471]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #471]	growth	37 °C
[Ref.: #46527]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #471]	Temperature range	mesophilic
[Ref.: #46527]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #471]	Oxygen tolerance	anaerobe
[Ref.: #46527]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	L-rhamnose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	salicin ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A

	Physiological tests	Metabolite	Indole test
[Ref.: #68367]		indole ChEBI	-	* from API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68367]	beta-glucosidase	+	3.2.1.21	* from API 20A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68367]	urease	-	3.5.1.5	* from API 20A

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #471]	2217	-	-	+	-	+	+	+	+	+	+	-	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #471]	Sample type/isolated from	calf rumen

[Ref.: #46527]	Sample type/isolated from	Calf rumen

[Ref.: #67770]	Sample type/isolated from	Calf rumen
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M59089 (>99% sequence identity) for Enterocloster clostridioformis subclade from Microbeatlas

Aquatic Samples	1136
Soil Samples	492
Animal Samples	71851
Plant Samples	358
Total Samples	73837

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #471]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #471]	Clostridium clostridioforme strain ATCC 25537 16S ribosomal RNA gene, partial sequence	M59089	1476	ENA	1531 tax ID
[Ref.: #67770]	[Clostridium] clostridioforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 1291	LC036310	1493	ENA	1531 tax ID
[Ref.: #20218]	Clostridium clostridioforme strain ATCC 25537 16S ribosomal RNA gene, partial sequence	JF313109	1310	ENA	1531 tax ID	*
[Ref.: #20218]	Clostridium clostridioforme strain DSM 933 16S ribosomal RNA gene, partial sequence	HM245937	845	ENA	1531 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Enterocloster clostridioformis ATCC 25537	GCA_900113155	scaffold	GenBank	1531 tax ID
[Ref.: #67770]	Enterocloster clostridioformis NCTC11224	GCA_900447015	contig	GenBank	1531 tax ID
[Ref.: #66792]	[Clostridium] clostridioforme strain NCTC11224	1531.20	wgs	PATRIC	1531 tax ID	*
[Ref.: #66792]	[Clostridium] clostridioforme strain ATCC 25537	1531.116	wgs	PATRIC	1531 tax ID	*
[Ref.: #66792]	Lachnoclostridium clostidiforme ATCC 25537	2593339147	draft	JGI IMG/M	1531 tax ID	*
[Ref.: #66792]	Lachnoclostridium clostridioforme NCTC 11224	2858553787	draft	JGI IMG/M	1531 tax ID	*

[Ref.: #471]	GC-content	48.8 mol%
[Ref.: #67770]	GC-content	48.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Clostridium] clostridioforme strain NCTC11224 PATRIC: 1531.20
[Ref.: #69480]	motile	no	87.44	no
[Ref.: #69480]	gram-positive	yes	86.297	no
[Ref.: #69480]	anaerobic	yes	99.304	yes
[Ref.: #69480]	aerobic	no	98.007	yes
[Ref.: #69480]	halophile	no	81.543	no
[Ref.: #69480]	spore-forming	no	54.617	no
[Ref.: #69480]	glucose-util	yes	91.557	no
[Ref.: #69480]	flagellated	no	94.076	no
[Ref.: #69480]	thermophile	no	98.724	no
[Ref.: #69480]	glucose-ferment	yes	76.854	no

Availability in culture collections External links

[Ref.: #471]

Culture collection no.

DSM 933, ATCC 25537, CCUG 16791, NCTC 11224, CIP 104318, JCM 1291, NCIMB 11018, VPI 0316, BCRC 14545, CCM 6066, VTT E-052777

[Ref.: #72102]

SI-ID 92923

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mechanism of inhibition of tannic acid and related compounds on the growth of intestinal bacteria.	Chung KT, Lu Z, Chou MW	Food Chem Toxicol	10.1016/s0278-6915(98)00086-6	1998	*

References

#471	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 933

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#46527 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16791

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72102

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92923.1 )

* These data were automatically processed and therefore are not curated

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[Clostridium] clostridioforme strain NCTC11224

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