Name: Clostridium carnis 10038
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2565

Type strain:

Species: Clostridium carnis

Strain Designation: 10038

Culture col. no.: DSM 1293, ATCC 25777, CDC KA 84, NCIB 10670, VPI 1635 B, JCM 1393, CDC KA84, CIP 104315, NCIMB 10670, NCTC 13036, VPI 1635B

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10038 <- ATCC <- L.D.S. Smith: strain VPI 1635B

NCBI tax ID(s): 1530 (species)

SI-ID 38664

ATCC 25777, CIP 104315, DSM 1293, NCIB 10670, JCM 1393, NCIMB 10670, NCTC 13036

Section

Clostridium carnis 10038 is an anaerobe, mesophilic bacterium that was isolated from Soil.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium carnis**
	Full Scientific Name (LPSN)	Clostridium carnis (Klein 1904) Spray 1939 (Approved Lists 1980)

	Synonym	"Bacillus* carnis"*
	Synonym	"Plectridium* carnis"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #624]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #624]

Culture medium growth

[Ref.: #624]

Culture medium link

Medium recipe at MediaDive

[Ref.: #624]

Culture medium composition

expand / minimize

[Ref.: #37171]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #37171]

Culture medium growth

[Ref.: #37171]

Culture medium composition

expand / minimize

[Ref.: #117188]

Culture medium

CIP Medium 20

[Ref.: #117188]

Culture medium growth

[Ref.: #117188]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #624]	growth	37 °C
[Ref.: #37171]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #624]	Temperature range	mesophilic
[Ref.: #37171]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #624]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC071786 (>99% sequence identity) for Phascolarctobacterium faecium from Microbeatlas

Aquatic Samples	7831
Soil Samples	1819
Animal Samples	143422
Plant Samples	621
Total Samples	153693

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #624]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #117188]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #624]	Clostridium carnis strain ATCC 25777 16S ribosomal RNA gene, partial sequence	M59091	1455	ENA	1530 tax ID
[Ref.: #67770]	Clostridium carnis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1393	LC071786	1459	ENA	1530 tax ID
[Ref.: #20218]	Clostridium carnis strain ATCC 25777 16S ribosomal RNA gene, partial sequence	HM245935	580	ENA	1530 tax ID	*
[Ref.: #20218]	Clostridium carnis genes for 16S rRNA, 16S-23S rRNA spacer region (rrn1), 23S rRNA, partial sequence	AB040718	346	ENA	1530 tax ID	*
[Ref.: #20218]	Clostridium carnis genes for 16S rRNA, 16S-23S rRNA spacer region (rrn2), 23S rRNA, partial sequence	AB040719	538	ENA	1530 tax ID	*
[Ref.: #20218]	Clostridium carnis genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequence	AB040720	556	ENA	1530 tax ID	*
[Ref.: #20218]	Clostridium carnis genes for 16S rRNA, tRNA-Ile, 23S rRNA, partial and complete sequence	AB040721	594	ENA	1530 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium carnis DSM 1293	2928353371	draft	JGI IMG/M	1530 tax ID	*

[Ref.: #624]	GC-content	28.0 mol%
[Ref.: #67770]	GC-content	28 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #624]

Culture collection no.

DSM 1293, ATCC 25777, CDC KA 84, NCIB 10670, VPI 1635 B, JCM 1393, CDC KA84, CIP 104315, NCIMB 10670, NCTC 13036, VPI 1635B

[Ref.: #72098]

SI-ID 38664

References

#624	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1293

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37171 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72098

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38664.1 )

#117188 Collection of Institut Pasteur ; Curators of the CIP; CIP 104315
* These data were automatically processed and therefore are not curated

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