Clostridium cadaveris (DSM 1284, ATCC 25783, NCIB 10676)

Name: Clostridium cadaveris (DSM 1284, ATCC 25783, NCIB 10676)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2564

Type strain

Strain Designation T4, TY

Culture col. no. DSM 1284 ATCC 25783 NCIB 10676 CCUG 24035 CIP 104314 6 more

NCBI tax ID(s) 1529

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- ATCC <- L.DS. Smith, VPI 2718 <- A. Prévot, T4 JCM <-- ATCC 25783 <-- L. DS. Smith VPI 2718 <-- A. Prévot T4. CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain TY <- A. Prévot, Inst. Pasteur, Paris, France

Links

Clostridium cadaveris T4 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from Rabbit.

spore-forming Gram-positive motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38668

ATCC 25783,CIP 104314,CCUG 24035,DSM 1284,NCIB 10676,JCM 1392,CCRC 14511,NCIMB 10676,BCRC 14511

@ref 20215

Last LPSN update 2026-05-29 08:25:30

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium cadaveris

Full scientific name Clostridium cadaveris (Klein 1899) McClung and McCoy 1957 (Approved Lists 1980)

Synonyms (1)

"Bacillus cadaveris"

BacDive ID	Other strains from **Clostridium cadaveris** (7)	Type strain
145789	C. cadaveris CCUG 29593
147538	C. cadaveris CCUG 33765
147750	C. cadaveris CCUG 34162
149667	C. cadaveris CCUG 38146
150178	C. cadaveris CCUG 39197
155180	C. cadaveris CCUG 56810
158908	C. cadaveris BS9-178-APC-2A, DSM 100963

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
117090	positive	rod-shaped

Colony morphology

117090

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
604	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
34633	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
117090	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
604	positive	growth	37
34633	positive	growth	37
47907	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
604	anaerobe
47907	anaerobe
117090	anaerobe
125439	anaerobe	99.274

Spore formation

117090

Spore formationyes

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
117090	15824 ChEBI	D-fructose	+	degradation
117090	17634 ChEBI	D-glucose	+	degradation
117090	4853 ChEBI	esculin	-	hydrolysis
117090	17716 ChEBI	lactose	-	degradation
117090	17306 ChEBI	maltose	-	degradation
117090	17632 ChEBI	nitrate	-	reduction
117090	16301 ChEBI	nitrite	+	reduction
117090	132112 ChEBI	sodium thiosulfate	+	builds gas from
117090	17992 ChEBI	sucrose	-	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117090	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
117090	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117090	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117090	caseinase	+	3.4.21.50
117090	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
117090	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
117090	gelatinase	+/-
117090	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
117090	lipase	-
68382	lipase (C 14)	-		from API zym
117090	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117090	ornithine decarboxylase	-	4.1.1.17
117090	protease	-
68382	trypsin	-	3.4.21.4	from API zym
117090	tween esterase	-
117090	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	L-lactaldehyde degradation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	CO2 fixation in Crenarchaeota	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	chorismate metabolism	88.89	8 of 9
66794	glycolysis	82.35	14 of 17
66794	hydrogen production	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycine betaine biosynthesis	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	vitamin B12 metabolism	76.47	26 of 34
66794	pyrimidine metabolism	75.56	34 of 45
66794	biotin biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	threonine metabolism	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	heme metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	pentose phosphate pathway	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	gluconeogenesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	myo-inositol biosynthesis	60	6 of 10
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	d-mannose degradation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	proline metabolism	54.55	6 of 11
66794	tryptophan metabolism	52.63	20 of 38
66794	histidine metabolism	51.72	15 of 29
66794	CMP-KDO biosynthesis	50	2 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	degradation of hexoses	50	9 of 18
66794	propionate fermentation	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	degradation of pentoses	46.43	13 of 28
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	arginine metabolism	45.83	11 of 24
66794	metabolism of disaccharids	45.45	5 of 11
66794	lipid metabolism	45.16	14 of 31
66794	nitrate assimilation	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	allantoin degradation	44.44	4 of 9
66794	molybdenum cofactor biosynthesis	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	leucine metabolism	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	isoleucine metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	vitamin B6 metabolism	36.36	4 of 11
66794	tetrahydrofolate metabolism	35.71	5 of 14
66794	tyrosine metabolism	35.71	5 of 14
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	valine metabolism	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfate reduction	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	methanogenesis from CO2	25	3 of 12
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117090	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type
67770	Rabbit
117090	Animal, Rabbit

Taxonmaps

69479

Global distribution of 16S sequence AB542932 (>99% sequence identity) for Clostridium cadaveris subclade from Microbeatlas

Aquatic Samples	507
Soil Samples	442
Animal Samples	12482
Plant Samples	123
Total Samples	13554

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
604	2	Risk group (German classification) According to TRBA 466
117090	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952132v1 assembly for Clostridium cadaveris JCM 1392	scaffold	GCA_039521325	1529	65.87

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Clostridium cadaveris 16S ribosomal RNA	M59086	1461	1529
20218	Clostridium cadaveris strain DSM 1284 16S ribosomal RNA gene, partial sequence	HM245934	770	1529
604	Clostridium cadaveris gene for 16S ribosomal RNA, partial sequence, strain: JCM 1392	AB542932	1473	1529

GC content

@ref	GC-content (mol%)	Method
604	27.0
67770	27	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3952132v1 assembly for Clostridium cadaveris JCM 1392
NCBI: GCA_039521325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.27	no
125439	gram_stain	BacteriaNetⓘ	positive	64.95	no
125439	motility	BacteriaNetⓘ	yes	68.59	no
125439	spore_formation	BacteriaNetⓘ	yes	79.11	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Superoxide dismutase in anaerobes: survey.	Gregory EM, Moore WE, Holdeman LV.	Appl Environ Microbiol	10.1128/aem.35.5.988-991.1978	1978
	Antimicrobial Activity of Soil Clostridium Enriched Conditioned Media Against Bacillus mycoides, Bacillus cereus, and Pseudomonas aeruginosa.	Pahalagedara ASNW, Flint S, Palmer J, Subbaraj A, Brightwell G, Gupta TB.	Front Microbiol	10.3389/fmicb.2020.608998	2020
Genetics	Draft Genome Sequence of Clostridium cadaveris Strain AGRFS2.2, Isolated from a Bovine Dairy Farm in New Zealand.	Gupta TB, Jauregui R, Maclean P, Nawarathana AS, Brightwell G	Microbiol Resour Announc	10.1128/MRA.00787-20	2020

References

#604	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1284
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34633	; Curators of the CIP;
#47907	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24035
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117090	Collection of Institut Pasteur ; Curators of the CIP; CIP 104314
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Clostridium cadaveris (DSM 1284, ATCC 25783, NCIB 10676)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039521325

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media