Name: Clostridium felsineum 2038
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2543

Type strain:

Species: Clostridium felsineum

Strain Designation: 2038, 10022

Culture col. no.: DSM 793, ATCC 17777, NCIMB 10659, CIP 104305

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10022 <- NCIB <- L.S. McClung: strain 2038

NCBI tax ID(s): 36839 (species)

SI-ID 36725

ATCC 17777, DSM 793, NCIB 10659, NCIMB 10659, CIP 104305, BCRC 14490, CCRC 14490, VTT E-00185

Other strains from Clostridium felsineum

C. felsineum 541, DSM 794, ATCC 17788, NCIMB ... (type strain)

Section

Clostridium felsineum 2038 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium felsineum**
	Full Scientific Name (LPSN)	Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939 (Approved Lists 1980)

	Synonym	"Bacillus* felsineus"*
	Synonym	Clostridium aurantibutyricum
	Synonym	Clostridium roseum

Information on morphological and physiological properties Morphology

[Ref.: #116564]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #116564]	Cell shape	rod-shaped

[Ref.: #116564]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %95.188

[Ref.: #116564]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #450]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #450]

Culture medium growth

[Ref.: #450]

Culture medium link

Medium recipe at MediaDive

[Ref.: #450]

Culture medium composition

expand / minimize

[Ref.: #35654]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #35654]

Culture medium growth

[Ref.: #35654]

Culture medium composition

expand / minimize

[Ref.: #116564]

Culture medium

CIP Medium 20

[Ref.: #116564]

Culture medium growth

[Ref.: #116564]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #450]			growth	37 °C
[Ref.: #35654]			growth	37 °C

[Ref.: #450]	Temperature range	mesophilic
[Ref.: #35654]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #450]	Oxygen tolerance	anaerobe
[Ref.: #116564]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.194

[Ref.: #116564]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %94
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116564]	cellobiose ChEBI	+	degradation
[Ref.: #116564]	D-arabinose ChEBI	+	degradation
[Ref.: #116564]	D-fructose ChEBI	+	degradation
[Ref.: #116564]	D-glucose ChEBI	+	degradation
[Ref.: #116564]	D-xylose ChEBI	+	degradation
[Ref.: #116564]	esculin ChEBI	+	hydrolysis
[Ref.: #116564]	lactose ChEBI	+	degradation
[Ref.: #116564]	maltose ChEBI	+	degradation
[Ref.: #116564]	nitrate ChEBI	+	reduction
[Ref.: #116564]	nitrate ChEBI	+	respiration
[Ref.: #116564]	nitrite ChEBI	-	reduction
[Ref.: #116564]	salicin ChEBI	-	degradation
[Ref.: #116564]	sucrose ChEBI	+	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116564]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116564]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116564]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116564]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116564]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116564]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116564]	7884	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence FJ358641 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	1145
Soil Samples	1313
Animal Samples	1392
Plant Samples	134
Total Samples	3984

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #450]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116564]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #450]	Clostridium aurantibutyricum strain DSM 793 16S ribosomal RNA gene, partial sequence	FJ358641	1488	ENA	1551 tax ID
[Ref.: #20218]	16S rRNA [Clostridium aurantibutyricum, NCIMB 10659, rRNA, 1421 nt]	S46736	1421	ENA	1551 tax ID	*
[Ref.: #20218]	C.aurantibutyricum (NCIMB10659) rrn gene for 16S rRNA	X68183	1430	ENA	1551 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium felsineum DSM 793	GCA_002006235	complete	GenBank	36839 tax ID	*
[Ref.: #66792]	Clostridium aurantibutyricum strain DSM 793	1551.15	wgs	PATRIC	1551 tax ID	*
[Ref.: #66792]	Clostridium aurantibutyricum DSM 793	2687453701	draft	JGI IMG/M	1551 tax ID	*

[Ref.: #450]

GC-content

27.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium aurantibutyricum strain DSM 793 PATRIC: 1551.15
[Ref.: #69481]	spore-forming	yes	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium aurantibutyricum strain DSM 793 PATRIC: 1551.15
[Ref.: #69480]	motile	yes	77.86	no
[Ref.: #69480]	gram-positive	yes	78.476	no
[Ref.: #69480]	anaerobic	yes	96.967	yes
[Ref.: #69480]	aerobic	no	97.219	yes
[Ref.: #69480]	halophile	no	95.414	no
[Ref.: #69480]	spore-forming	yes	97.568	no
[Ref.: #69480]	thermophile	no	99.442	yes
[Ref.: #69480]	glucose-util	yes	90.244	no
[Ref.: #69480]	flagellated	yes	70.689	no
[Ref.: #69480]	glucose-ferment	yes	64.042	no

Availability in culture collections External links

[Ref.: #450]

Culture collection no.

DSM 793, ATCC 17777, NCIMB 10659, CIP 104305

[Ref.: #72077]

SI-ID 36725

References

#450	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 793

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35654 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72077

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36725.1 )

#116564 Collection of Institut Pasteur ; Curators of the CIP; CIP 104305
* These data were automatically processed and therefore are not curated

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Clostridium aurantibutyricum strain DSM 793

Clostridium aurantibutyricum strain DSM 793

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