Clostridium acetobutylicum (DSM 792, ATCC 824, VKM B-1787)

Name: Clostridium acetobutylicum (DSM 792, ATCC 824, VKM B-1787)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2529

Type strain

Strain Designation 2291, W

Culture col. no. DSM 792 ATCC 824 VKM B-1787 CCUG 42182 C LMG 5710 12 more

NCBI tax ID(s) 272562 1488

Special Collections DSMZ CCUG JCM KCTC

History <- ATCC; ATCC 824 <- E. R. Weyer, Yale University, Laboratory of General Bacteriology, New Haven, Connecticut, USA; W (Granulobacter pectinovorum) IAM 19013 <-- S. Sugama <-- ATCC 824 <-- E. R. Weyer.

Links

Clostridium acetobutylicum 2291 is an anaerobe, mesophilic prokaryote that produces alcohol and was isolated from cornmeal.

alcohol production anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92208

LMG 5710,ATCC 824,CECT 508,IAM 19013,IFO 13948,NCIB 8052,ATCC 51743,VKM B-1787,JCM 1419,CCRC 10639,KCTC 1790,NCIMB 13357,IFO 3346,VTT E-77022,LMD 29.24,LMD 84.48,KCTC 1788,NRRL B-527,CCUG42182,NBRC 13948,NCCB 29024,NCCB 84048,BCRC 10639,CCT 0485,VKM B-1789,NCIM 2337,CDBB 797,NCIMB 8052,NRRL B-23491,CCUG 42182 C,CGMCC 1.0070,CGMCC 1.0244,VTT E-00022,DSM 792

@ref 20215

Last LPSN update 2025-12-16 09:47:20

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium acetobutylicum

Full scientific name Clostridium acetobutylicum McCoy et al. 1926 (Approved Lists 1980)

BacDive ID	Other strains from **Clostridium acetobutylicum** (60)	Type strain
2530	C. acetobutylicum 2289, McClung, T, 2289, McClung, DSM 1731, ...
2531	C. acetobutylicum Weizman, DSM 1732, NCIMB 2951
2532	C. acetobutylicum DSM 1733, NCIMB 6441, Wisconsin B-3
2533	C. acetobutylicum 462, H, DSM 1737, ATCC 3625
2534	C. acetobutylicum McClung 2288, 48, DSM 1738, ATCC 8529
2536	C. acetobutylicum B-11-3, DSM 6228, ATCC 39236
100560	C. acetobutylicum STI09050(IMET), SK31,
165664	C. acetobutylicum JCM 7960, IAM 19017
165665	C. acetobutylicum JCM 7961, IAM 19018
165666	C. acetobutylicum JCM 7962, IAM 19019
165667	C. acetobutylicum JCM 7963, IAM 19020
165668	C. acetobutylicum JCM 7964, IAM 19021
165669	C. acetobutylicum JCM 7965, IAM 19022
165670	C. acetobutylicum JCM 7966, IAM 19023
165671	C. acetobutylicum JCM 7967, IAM 19024
165672	C. acetobutylicum JCM 7969, IAM 19026
165673	C. acetobutylicum JCM 7970, IAM 19028
165674	C. acetobutylicum JCM 7971, IAM 19029
165675	C. acetobutylicum JCM 7973, IAM 19031
165676	C. acetobutylicum JCM 7975, IAM 19033
165677	C. acetobutylicum JCM 7977, IAM 19036
165678	C. acetobutylicum JCM 7978, IAM 19037
165679	C. acetobutylicum JCM 7979, IAM 19038
165680	C. acetobutylicum JCM 7980, IAM 19039
165681	C. acetobutylicum JCM 7982, IAM 19041
165682	C. acetobutylicum JCM 7983, IAM 19043
165683	C. acetobutylicum JCM 7984, IAM 19044
165684	C. acetobutylicum JCM 7985, IAM 19045
165686	C. acetobutylicum JCM 7987, IAM 19047
165687	C. acetobutylicum JCM 7988, IAM 19048
165688	C. acetobutylicum JCM 7989, IAM 19049
165690	C. acetobutylicum JCM 7991, IAM 19051
165691	C. acetobutylicum JCM 7992, IAM 19053
165692	C. acetobutylicum JCM 7993, IAM 19055
165693	C. acetobutylicum JCM 7994, IAM 19056
165694	C. acetobutylicum JCM 7995, IAM 19058
165695	C. acetobutylicum JCM 7996, IAM 19059
165697	C. acetobutylicum JCM 7998, IAM 19061
165698	C. acetobutylicum JCM 7999, IAM 19062
165699	C. acetobutylicum JCM 8000, IAM 19063
165700	C. acetobutylicum JCM 8001, IAM 19065
165701	C. acetobutylicum JCM 8002, IAM 19066
165702	C. acetobutylicum JCM 8003, IAM 19069
165703	C. acetobutylicum JCM 8004, IAM 19071
165704	C. acetobutylicum JCM 8005, IAM 19073
165705	C. acetobutylicum JCM 8006, IAM 19074
165706	C. acetobutylicum JCM 8007, IAM 19075
165707	C. acetobutylicum JCM 8008, IAM 19078
165708	C. acetobutylicum JCM 8009, IAM 19080
165709	C. acetobutylicum JCM 8010, IAM 19081
165710	C. acetobutylicum JCM 8011, IAM 19083
165711	C. acetobutylicum JCM 8012, IAM 19084
165712	C. acetobutylicum JCM 8013, IAM 19085
165713	C. acetobutylicum JCM 8014, IAM 19087
165714	C. acetobutylicum JCM 8015, IAM 19088
165715	C. acetobutylicum JCM 8016, IAM 19089
165716	C. acetobutylicum JCM 8017, IAM 19090
165717	C. acetobutylicum JCM 8019, IAM 19100
165718	C. acetobutylicum JCM 8020, IAM 19103
165719	C. acetobutylicum JCM 8021, IAM 19104

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
449	CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411)		Medium recipe at MediaDive	Name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411) Composition: Potato 200.0 g/l D-Glucose 6.0 g/l CaCO3 2.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water
449	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
449	positive	growth	37	mesophilic
55354	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
449	anaerobe
55354	anaerobe
125439	anaerobe	98

Compound production

@ref	Compound
449	acetone
449	n butanol
449	autobacteriocin
449	acidolysin

Observation

67770

ObservationAssay of p-Aminobenzoic acid

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite
67770	15347 ChEBI	acetone
67770		butanol
68380	35581 ChEBI	indole	from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	+		from API rID32A
68382	beta-glucosidase	+	3.2.1.21	from API zym
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	ribulose monophosphate pathway	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	acetoin degradation	100	3 of 3
66794	CMP-KDO biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	87.5	7 of 8
66794	pyrimidine metabolism	84.44	38 of 45
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	threonine metabolism	80	8 of 10
66794	hydrogen production	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	glycogen biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	biotin biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	flavin biosynthesis	73.33	11 of 15
66794	purine metabolism	72.34	68 of 94
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	starch degradation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	methionine metabolism	65.38	17 of 26
66794	citric acid cycle	64.29	9 of 14
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	heme metabolism	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	oxidative phosphorylation	60.44	55 of 91
66794	factor 420 biosynthesis	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	molybdenum cofactor biosynthesis	55.56	5 of 9
66794	metabolism of disaccharids	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	sulfate reduction	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	leucine metabolism	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	lactate fermentation	50	2 of 4
66794	degradation of sugar alcohols	50	8 of 16
66794	pantothenate biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	selenocysteine biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	tryptophan metabolism	50	19 of 38
66794	cysteine metabolism	50	9 of 18
66794	lysine metabolism	47.62	20 of 42
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	degradation of hexoses	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	vitamin B6 metabolism	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	androgen and estrogen metabolism	25	4 of 16
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
55354	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
55354	-	-	-	-	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Engineered	#Food production	-

Isolation

449

Sample typecornmeal

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
449	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM876v1 assembly for Clostridium acetobutylicum ATCC 824	complete	GCA_000008765	272562.8	637000076	272562	98.27
66792	ASM1696v1 assembly for Clostridium beijerinckii NCIMB 8052	complete	GCA_000016965	290402.41	640753016	290402	97.73

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Clostridium acetobutylicum ATCC 824 16S ribosomal RNA (rrn) gene, partial sequence	U16166	1411	272562
20218	Clostridium acetobutylicum DSM 792 16S ribosomal RNA (rrn) gene, partial sequence	U17030	554	272562
20218	C.acetobutylicum (ATCC 824, T) 16S rRNA	X78070	1389	272562
67770	Clostridium acetobutylicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1419	AB595131	1467	1488
67770	16S rRNA [Clostridium acetobutylicum, NCIMB 8052, rRNA, 1411 nt]	S46735	1411	1488
124043	Clostridium acetobutylicum NCIMB8052 16S ribosomal RNA (rrn) gene, partial sequence.	U16165	1416	290402

GC content

@ref	GC-content (mol%)	Method
449	28.0
67770	33.4	high performance liquid chromatography (HPLC)
67770	28	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium acetobutylicum ATCC 824
NCBI: GCA_000008765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	82.70	no
125439	motility	BacteriaNetⓘ	yes	76.30	no
125439	gram_stain	BacteriaNetⓘ	positive	84.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium acetobutylicum ATCC 824 ATCC 824
NCBI: GCA_000008765.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.52	no
125438	anaerobic	anaerobicⓘ	yes	84.78	yes
125438	aerobic	aerobicⓘ	no	96.11	yes
125438	spore-forming	spore-formingⓘ	yes	82.06	no
125438	thermophilic	thermophileⓘ	no	91.78	yes
125438	flagellated	motile2+ⓘ	yes	79.46	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Higher butanol titer and selectivity in electro-fermentation experiments with Clostridium acetobutylicum ATCC 824 are due mainly to methyl viologen rather than electrode polarization.	Beudy E, Menir S, Laurent M, Ben Chaabane F, Bouchez T, Velly H.	Bioprocess Biosyst Eng	10.1007/s00449-025-03212-7	2025
	Gene essentiality in the solventogenic Clostridium acetobutylicum DSM 792.	Delarouzee A, Lopes Ferreira N, Baum C, Wasels F.	Appl Environ Microbiol	10.1128/aem.00282-24	2024
	Electron conductive compounds alter fermentative pathways and cooperation in Clostridium carboxidivorans and Clostridium acetobutylicum in co-culture.	Feliu-Paradeda L, Puig S, Baneras L.	FEMS Microbiol Ecol	10.1093/femsec/fiaf090	2025
	Alleviation of Carbon Catabolite Repression through araR and xylR Inactivation in Clostridium acetobutylicum DSM 792.	Delarouzee A, Lopes Ferreira N, Wasels F.	Appl Environ Microbiol	10.1128/aem.02135-22	2023
	Propanol production through microbial fermentation of biomass.	Sun C, Yang L, Zhao C, Li H, Deng Z, Liu G, Wu C.	Bioresour Bioprocess	10.1186/s40643-025-00966-6	2025
	Design and validation of a multiplex PCR method for the simultaneous quantification of Clostridium acetobutylicum, Clostridium carboxidivorans and Clostridium cellulovorans.	Feliu-Paradeda L, Puig S, Baneras L.	Sci Rep	10.1038/s41598-023-47007-w	2023
	Developing a genetic engineering method for Acetobacterium wieringae to expand one-carbon valorization pathways.	Moreira JPC, Heap JT, Alves JI, Domingues L.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02259-6	2023
	New insights into the influence of pre-culture on robust solvent production of C. acetobutylicum.	Oehlenschlager K, Volkmar M, Stiefelmaier J, Langsdorf A, Holtmann D, Tippkotter N, Ulber R.	Appl Microbiol Biotechnol	10.1007/s00253-023-12981-8	2024
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Metabolism	Bioconversion of Lignocellulosic Biomass into Value Added Products under Anaerobic Conditions: Insight into Proteomic Studies.	Velez-Mercado MI, Talavera-Caro AG, Escobedo-Uribe KM, Sanchez-Munoz S, Luevanos-Escareno MP, Hernandez-Teran F, Alvarado A, Balagurusamy N.	Int J Mol Sci	10.3390/ijms222212249	2021
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Metabolism	Enforcing ATP hydrolysis enhanced anaerobic glycolysis and promoted solvent production in Clostridium acetobutylicum.	Dai Z, Zhu Y, Dong H, Zhao C, Zhang Y, Li Y.	Microb Cell Fact	10.1186/s12934-021-01639-7	2021
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Metabolism	Reassessment of the role of CaCO₃ in n-butanol production from pretreated lignocellulosic biomass by Clostridium acetobutylicum.	Su Z, Wang F, Xie Y, Xie H, Mao G, Zhang H, Song A, Zhang Z.	Sci Rep	10.1038/s41598-020-74899-9	2020
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Genetics	Comparative genomics of Clostridium butyricum reveals a conserved genome architecture and novel virulence-related gene clusters	Anderson O, Chong J, Thomas G.	Microb Genom		2025
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	Enhanced isopropanol-butanol-ethanol mixture production through manipulation of intracellular NAD(P)H level in the recombinant Clostridium acetobutylicum XY16.	Wang C, Xin F, Kong X, Zhao J, Dong W, Zhang W, Ma J, Wu H, Jiang M.	Biotechnol Biofuels	10.1186/s13068-018-1024-0	2018
Metabolism	Simplifying multidimensional fermentation dataset analysis and visualization: One step closer to capturing high-quality mutant strains.	Zhou X, Xu D, Jiang TT.	Sci Rep	10.1038/srep39875	2017
	Validating a Xylose Regulator to Increase Polyhydroxybutyrate Production for Utilizing Mixed Sugars from Lignocellulosic Biomass Using Escherichia coli.	Oh SJ, Lee HJ, Hwang JH, Kim HJ, Shin N, Lee SH, Seo SO, Bhatia SK, Yang YH.	J Microbiol Biotechnol	10.4014/jmb.2306.06006	2024
Metabolism	Butanol production from hydrothermolysis-pretreated switchgrass: Quantification of inhibitors and detoxification of hydrolyzate.	Liu K, Atiyeh HK, Pardo-Planas O, Ezeji TC, Ujor V, Overton JC, Berning K, Wilkins MR, Tanner RS.	Bioresour Technol	10.1016/j.biortech.2015.04.018	2015
Metabolism	Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.	Takenoya M, Taguchi S, Yajima S.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x18014814	2018
Metabolism	Impact of iron reduction on the metabolism of Clostridium acetobutylicum.	List C, Hosseini Z, Lederballe Meibom K, Hatzimanikatis V, Bernier-Latmani R.	Environ Microbiol	10.1111/1462-2920.14640	2019
Metabolism	Functional Expression of the Clostridium ljungdahlii Acetyl-Coenzyme A Synthase in Clostridium acetobutylicum as Demonstrated by a Novel In Vivo CO Exchange Activity En Route to Heterologous Installation of a Functional Wood-Ljungdahl Pathway.	Fast AG, Papoutsakis ET.	Appl Environ Microbiol	10.1128/aem.02307-17	2018
Enzymology	Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum.	Kim S, Jang YS, Ha SC, Ahn JW, Kim EJ, Lim JH, Cho C, Ryu YS, Lee SK, Lee SY, Kim KJ.	Nat Commun	10.1038/ncomms9410	2015
	Role of Trace Elements as Cofactor: An Efficient Strategy toward Enhanced Biobutanol Production.	Nimbalkar PR, Khedkar MA, Parulekar RS, Chandgude VK, Sonawane KD, Chavan PV, Bankar SB.	ACS Sustain Chem Eng	10.1021/acssuschemeng.8b01611	2018
Biotechnology	Development of optimal steam explosion pretreatment and highly effective cell factory for bioconversion of grain vinegar residue to butanol.	Xia M, Peng M, Xue D, Cheng Y, Li C, Wang D, Lu K, Zheng Y, Xia T, Song J, Wang M.	Biotechnol Biofuels	10.1186/s13068-020-01751-7	2020
	Draft Genome Sequence of the Strict Anaerobe Clostridium homopropionicum LuHBu1 (DSM 5847).	Beck MH, Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre P.	Genome Announc	10.1128/genomea.01112-15	2015
	Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation.	Liu H, Zhang J, Yuan J, Jiang X, Jiang L, Zhao G, Huang D, Liu B.	Biotechnol Biofuels	10.1186/s13068-019-1440-9	2019
Metabolism	Discovery of a novel gene involved in autolysis of Clostridium cells.	Yang L, Bao G, Zhu Y, Dong H, Zhang Y, Li Y.	Protein Cell	10.1007/s13238-013-3025-x	2013
	Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer.	Kolek J, Sedlar K, Provaznik I, Patakova P.	Genome Announc	10.1128/genomea.00192-14	2014
	Bioprospecting of microbial strains for biofuel production: metabolic engineering, applications, and challenges.	Adegboye MF, Ojuederie OB, Talia PM, Babalola OO.	Biotechnol Biofuels	10.1186/s13068-020-01853-2	2021
	Transcriptional regulation of cellobiose utilization by PRD-domain containing Sigma54-dependent transcriptional activator (CelR) and catabolite control protein A (CcpA) in Bacillus thuringiensis.	Zhang L, Xu H, Cheng H, Song F, Zhang J, Peng Q.	Front Microbiol	10.3389/fmicb.2024.1160472	2024
Metabolism	Engineering Clostridial Aldehyde/Alcohol Dehydrogenase for Selective Butanol Production.	Cho C, Hong S, Moon HG, Jang YS, Kim D, Lee SY.	mBio	10.1128/mbio.02683-18	2019
	Multiple variants of the type VII secretion system in Gram-positive bacteria.	Garrett SR, Higginson AB, Palmer T.	Microlife	10.1093/femsml/uqae013	2024
Pathogenicity	Transcriptional analysis of micronutrient zinc-associated response for enhanced carbohydrate utilization and earlier solventogenesis in Clostridium acetobutylicum.	Wu YD, Xue C, Chen LJ, Wan HH, Bai FW.	Sci Rep	10.1038/srep16598	2015
	High-throughput colorimetric assays optimized for detection of ketones and aldehydes produced by microbial cell factories.	Kozaeva E, Mol V, Nikel PI, Nielsen AT.	Microb Biotechnol	10.1111/1751-7915.14097	2022
	Minimal aromatic aldehyde reduction (MARE) yeast platform for engineering vanillin production.	Mo Q, Yuan J.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02454-5	2024
Genetics	Application of different types of CRISPR/Cas-based systems in bacteria.	Liu Z, Dong H, Cui Y, Cong L, Zhang D.	Microb Cell Fact	10.1186/s12934-020-01431-z	2020
Biotechnology	Genetic tools for the electrotroph Sporomusa ovata and autotrophic biosynthesis.	Tremblay P-L, Zhang T.	Appl Environ Microbiol	10.1128/aem.01757-23	2024
	n-Butanol derived from biochemical and chemical routes: A review.	Ndaba B, Chiyanzu I, Marx S.	Biotechnol Rep (Amst)	10.1016/j.btre.2015.08.001	2015
Metabolism	Cell factories converting lactate and acetate to butyrate: Clostridium butyricum and microbial communities from dark fermentation bioreactors.	Detman A, Mielecki D, Chojnacka A, Salamon A, Blaszczyk MK, Sikora A.	Microb Cell Fact	10.1186/s12934-019-1085-1	2019
Metabolism	Elucidating the contributions of multiple aldehyde/alcohol dehydrogenases to butanol and ethanol production in Clostridium acetobutylicum.	Dai Z, Dong H, Zhang Y, Li Y.	Sci Rep	10.1038/srep28189	2016
Metabolism	Enhanced butanol production obtained by reinforcing the direct butanol-forming route in Clostridium acetobutylicum.	Jang YS, Lee JY, Lee J, Park JH, Im JA, Eom MH, Lee J, Lee SH, Song H, Cho JH, Seung do Y, Lee SY.	mBio	10.1128/mbio.00314-12	2012
	EMUlator: An Elementary Metabolite Unit (EMU) Based Isotope Simulator Enabled by Adjacency Matrix.	Wu C, Chen CH, Lo J, Michener W, Maness P, Xiong W.	Front Microbiol	10.3389/fmicb.2019.00922	2019
Metabolism	A synthetic enzymatic pathway for extremely thermophilic acetone production based on the unexpectedly thermostable acetoacetate decarboxylase from Clostridium acetobutylicum.	Zeldes BM, Straub CT, Otten JK, Adams MWW, Kelly RM.	Biotechnol Bioeng	10.1002/bit.26829	2018
Pathogenicity	Large-Scale Identification of Known and Novel RRNPP Quorum-Sensing Systems by RRNPP_Detector Captures Novel Features of Bacterial, Plasmidic, and Viral Coevolution.	Bernard C, Li Y, Lopez P, Bapteste E.	Mol Biol Evol	10.1093/molbev/msad062	2023
	Complete Genome Sequence of the Solvent Producer Clostridium saccharobutylicum NCP262 (DSM 13864).	Poehlein A, Hartwich K, Krabben P, Ehrenreich A, Liebl W, Durre P, Gottschalk G, Daniel R.	Genome Announc	10.1128/genomea.00997-13	2013
	Genetic improvement of n-butanol tolerance in Escherichia coli by heterologous overexpression of groESL operon from Clostridium acetobutylicum.	Abdelaal AS, Ageez AM, Abd El-Hadi AE, Abdallah NA.	3 Biotech	10.1007/s13205-014-0235-8	2015
	Functional dissection and modulation of the BirA protein for improved autotrophic growth of gas-fermenting Clostridium ljungdahlii.	Zhang C, Nie X, Zhang H, Wu Y, He H, Yang C, Jiang W, Gu Y.	Microb Biotechnol	10.1111/1751-7915.13884	2021
Metabolism	Improving butanol fermentation to enter the advanced biofuel market.	Tracy BP.	mBio	10.1128/mbio.00518-12	2012
Metabolism	A division of labor between two biotin protein ligase homologs.	Song X, Henke SK, Cronan JE.	Mol Microbiol	10.1111/mmi.14761	2021
Metabolism	RstA Is a Major Regulator of Clostridioides difficile Toxin Production and Motility.	Edwards AN, Anjuwon-Foster BR, McBride SM.	mBio	10.1128/mbio.01991-18	2019
	A roadmap for gene system development in Clostridium.	Minton NP, Ehsaan M, Humphreys CM, Little GT, Baker J, Henstra AM, Liew F, Kelly ML, Sheng L, Schwarz K, Zhang Y.	Anaerobe	10.1016/j.anaerobe.2016.05.011	2016
Biotechnology	Purple non-sulfur bacteria for biotechnological applications.	Morrison HM, Bose A.	J Ind Microbiol Biotechnol	10.1093/jimb/kuae052	2024
Metabolism	An ethanolamine-phosphate modified glycolipid in Clostridium acetobutylicum that responds to membrane stress.	Tian B, Guan Z, Goldfine H.	Biochim Biophys Acta	10.1016/j.bbalip.2013.03.005	2013
	Acetogenic production of 3-Hydroxybutyrate using a native 3-Hydroxybutyryl-CoA Dehydrogenase.	Lo J, Humphreys JR, Magnusson L, Wachter B, Urban C, Hebdon SD, Xiong W, Chou KJ, Ching Maness P.	Front Microbiol	10.3389/fmicb.2022.948369	2022
Metabolism	A Quantitative System-Scale Characterization of the Metabolism of Clostridium acetobutylicum.	Yoo M, Bestel-Corre G, Croux C, Riviere A, Meynial-Salles I, Soucaille P.	mBio	10.1128/mbio.01808-15	2015
Metabolism	Deeper below the surface-transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock.	Patakova P, Kolek J, Jureckova K, Branska B, Sedlar K, Vasylkivska M, Provaznik I.	Microbiologyopen	10.1002/mbo3.1146	2021
Genetics	Reliable and Scalable Identification and Prioritization of Putative Cellulolytic Anaerobes With Large Genome Data.	Wang Y, Li L, Xia Y, Zhang T.	Front Bioinform	10.3389/fbinf.2022.813771	2022
	Genome Sequence of the Neurotoxigenic Clostridium butyricum Strain 5521.	Hassan KA, Elbourne LD, Tetu SG, Johnson EA, Paulsen IT.	Genome Announc	10.1128/genomea.00632-14	2014
	Biodegradation of aromatic pollutants meets synthetic biology.	Xiang L, Li G, Wen L, Su C, Liu Y, Tang H, Dai J.	Synth Syst Biotechnol	10.1016/j.synbio.2021.06.001	2021
	The Restriction-Modification Systems of Clostridium carboxidivorans P7.	Kottenhahn P, Philipps G, Bunk B, Sproer C, Jennewein S.	Microorganisms	10.3390/microorganisms11122962	2023
	Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia.	Li S, Huang L, Ke C, Pang Z, Liu L.	Biotechnol Biofuels	10.1186/s13068-020-01674-3	2020
	Evaluation of industrial dairy waste (milk dust powder) for acetone-butanol-ethanol production by solventogenic Clostridium species.	Ujor V, Bharathidasan AK, Cornish K, Ezeji TC.	Springerplus	10.1186/2193-1801-3-387	2014
	A universal mariner transposon system for forward genetic studies in the genus Clostridium.	Zhang Y, Grosse-Honebrink A, Minton NP.	PLoS One	10.1371/journal.pone.0122411	2015
Metabolism	Integrated intracellular metabolic profiling and pathway analysis approaches reveal complex metabolic regulation by Clostridium acetobutylicum.	Liu H, Huang D, Wen J.	Microb Cell Fact	10.1186/s12934-016-0436-4	2016
	Inactivation of the Pta-AckA pathway impairs fitness of Bacillus anthracis during overflow metabolism.	Won HI, Watson SM, Ahn JS, Endres JL, Bayles KW, Sadykov MR.	J Bacteriol	10.1128/jb.00660-20	2021
Metabolism	Heterologous Expression of the Clostridium carboxidivorans CO Dehydrogenase Alone or Together with the Acetyl Coenzyme A Synthase Enables both Reduction of CO₂ and Oxidation of CO by Clostridium acetobutylicum.	Carlson ED, Papoutsakis ET.	Appl Environ Microbiol	10.1128/aem.00829-17	2017
	A comprehensive review of microbial fuel cells considering materials, methods, structures, and microorganisms.	Jalili P, Ala A, Nazari P, Jalili B, Ganji DD.	Heliyon	10.1016/j.heliyon.2024.e25439	2024
	Research advances on the consolidated bioprocessing of lignocellulosic biomass.	Li Z, Waghmare PR, Dijkhuizen L, Meng X, Liu W.	Eng Microbiol	10.1016/j.engmic.2024.100139	2024
	Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution.	Shi Y, Li YX, Li YY.	BMC Bioinformatics	10.1186/1471-2105-11-s11-s9	2010
Metabolism	Phosphoketolase pathway for xylose catabolism in Clostridium acetobutylicum revealed by 13C metabolic flux analysis.	Liu L, Zhang L, Tang W, Gu Y, Hua Q, Yang S, Jiang W, Yang C.	J Bacteriol	10.1128/jb.00713-12	2012
Metabolism	Pervaporative recovery of ABE during continuous cultivation: enhancement of performance.	Van Hecke W, Hofmann T, De Wever H.	Bioresour Technol	10.1016/j.biortech.2012.11.072	2013
Metabolism	Cap0037, a Novel Global Regulator of Clostridium acetobutylicum Metabolism.	Nguyen NP, Linder S, Flitsch SK, Schiel-Bengelsdorf B, Durre P, Soucaille P.	mBio	10.1128/mbio.01218-16	2016
	Pleiotropic Regulator GssR Positively Regulates Autotrophic Growth of Gas-Fermenting Clostridium ljungdahlii.	Zhang H, Zhang C, Nie X, Wu Y, Yang C, Jiang W, Gu Y.	Microorganisms	10.3390/microorganisms11081968	2023
	Engineering E. coli strain for conversion of short chain fatty acids to bioalcohols.	Mattam AJ, Yazdani SS.	Biotechnol Biofuels	10.1186/1754-6834-6-128	2013
	Development of a conditional plasmid for gene deletion in non-model Fusobacterium nucleatum strains.	Zhou P, G C B, Wu C.	Appl Environ Microbiol	10.1128/aem.01816-24	2025
Genetics	Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423.	Mate de Gerando H, Wasels F, Bisson A, Clement B, Bidard F, Jourdier E, Lopez-Contreras AM, Lopes Ferreira N.	BMC Genomics	10.1186/s12864-018-4636-7	2018
Metabolism	Relating Carbon and Nitrogen Isotope Effects to Reaction Mechanisms during Aerobic or Anaerobic Degradation of RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Pure Bacterial Cultures.	Fuller ME, Heraty L, Condee CW, Vainberg S, Sturchio NC, Bohlke JK, Hatzinger PB.	Appl Environ Microbiol	10.1128/aem.00073-16	2016
Metabolism	Development of a High-Efficiency Transformation Method and Implementation of Rational Metabolic Engineering for the Industrial Butanol Hyperproducer Clostridium saccharoperbutylacetonicum Strain N1-4.	Herman NA, Li J, Bedi R, Turchi B, Liu X, Miller MJ, Zhang W.	Appl Environ Microbiol	10.1128/aem.02942-16	2017
Metabolism	Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum.	Zhang L, Leyn SA, Gu Y, Jiang W, Rodionov DA, Yang C.	J Bacteriol	10.1128/jb.06241-11	2012
	Consolidated bioprocessing for butanol production of cellulolytic Clostridia: development and optimization.	Wen Z, Li Q, Liu J, Jin M, Yang S.	Microb Biotechnol	10.1111/1751-7915.13478	2020
	Acetate Kinase a Antisense Delivery by PAMAM Dendrimer for Decreasing Acetate Production and Increasing the Production of Recombinant Albumin in E. coli.	Ahangarzadeh S, Moghimi H, Bandehpour M, Ranjbari J.	Iran J Biotechnol	10.30498/ijb.2021.2617	2021
Phylogeny	Microbial solvent formation revisited by comparative genome analysis.	Poehlein A, Solano JDM, Flitsch SK, Krabben P, Winzer K, Reid SJ, Jones DT, Green E, Minton NP, Daniel R, Durre P.	Biotechnol Biofuels	10.1186/s13068-017-0742-z	2017
	Introducing a single secondary alcohol dehydrogenase into butanol-tolerant Clostridium acetobutylicum Rh8 switches ABE fermentation to high level IBE fermentation.	Dai Z, Dong H, Zhu Y, Zhang Y, Li Y, Ma Y.	Biotechnol Biofuels	10.1186/1754-6834-5-44	2012
Enzymology	Enhancing 1,3-Propanediol Productivity in the Non-Model Chassis Clostridium beijerinckii through Genetic Manipulation.	Bortolucci J, Guazzaroni ME, Schoch T, Durre P, Reginatto V.	Microorganisms	10.3390/microorganisms11071855	2023
	Anaerobic detoxification of acetic acid in a thermophilic ethanologen.	Shaw AJ, Miller BB, Rogers SR, Kenealy WR, Meola A, Bhandiwad A, Sillers WR, Shikhare I, Hogsett DA, Herring CD.	Biotechnol Biofuels	10.1186/s13068-015-0257-4	2015
Enzymology	Kinetic Isotope Effects and Hydrogen/Deuterium Exchange Reveal Large Conformational Changes During the Catalysis of the Clostridium acetobutylicum Spore Photoproduct Lyase.	Yang L, Adhikari J, Gross ML, Li L.	Photochem Photobiol	10.1111/php.12697	2017
Metabolism	Scaffoldin modules serving as "cargo" domains to promote the secretion of heterologous cellulosomal cellulases by Clostridium acetobutylicum.	Chanal A, Mingardon F, Bauzan M, Tardif C, Fierobe HP.	Appl Environ Microbiol	10.1128/aem.00758-11	2011
	Ribozyme-Mediated Downregulation Uncovers DNA Integrity Scanning Protein A (DisA) as a Solventogenesis Determinant in Clostridium beijerinckii.	Ujor VC, Lai LB, Okonkwo CC, Gopalan V, Ezeji TC.	Front Bioeng Biotechnol	10.3389/fbioe.2021.669462	2021
Metabolism	Metabolic engineering of Escherichia coli carrying the hybrid acetone-biosynthesis pathway for efficient acetone biosynthesis from acetate.	Yang H, Huang B, Lai N, Gu Y, Li Z, Ye Q, Wu H, Wu H.	Microb Cell Fact	10.1186/s12934-019-1054-8	2019
	Biosynthesis of value-added bioproducts from hemicellulose of biomass through microbial metabolic engineering.	Geng B, Jia X, Peng X, Han Y.	Metab Eng Commun	10.1016/j.mec.2022.e00211	2022
Metabolism	Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598.	Vasylkivska M, Jureckova K, Branska B, Sedlar K, Kolek J, Provaznik I, Patakova P.	PLoS One	10.1371/journal.pone.0224560	2019
	Elucidation of the roles of adhE1 and adhE2 in the primary metabolism of Clostridium acetobutylicum by combining in-frame gene deletion and a quantitative system-scale approach.	Yoo M, Croux C, Meynial-Salles I, Soucaille P.	Biotechnol Biofuels	10.1186/s13068-016-0507-0	2016
Pathogenicity	Identification and characterization of two functionally unknown genes involved in butanol tolerance of Clostridium acetobutylicum.	Jia K, Zhang Y, Li Y.	PLoS One	10.1371/journal.pone.0038815	2012
Metabolism	Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.	Zhang L, Nie X, Ravcheev DA, Rodionov DA, Sheng J, Gu Y, Yang S, Jiang W, Yang C.	J Bacteriol	10.1128/jb.02037-14	2014
Metabolism	Enhancing Butanol Production under the Stress Environments of Co-Culturing Clostridium acetobutylicum/Saccharomyces cerevisiae Integrated with Exogenous Butyrate Addition.	Luo H, Ge L, Zhang J, Zhao Y, Ding J, Li Z, He Z, Chen R, Shi Z.	PLoS One	10.1371/journal.pone.0141160	2015
Enzymology	The current strategies and parameters for the enhanced microbial production of 2,3-butanediol.	Hakizimana O, Matabaro E, Lee BH.	Biotechnol Rep (Amst)	10.1016/j.btre.2019.e00397	2020
	Developing Clostridia as Cell Factories for Short- and Medium-Chain Ester Production.	Wang Q, Al Makishah NH, Li Q, Li Y, Liu W, Sun X, Wen Z, Yang S.	Front Bioeng Biotechnol	10.3389/fbioe.2021.661694	2021
Metabolism	Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level.	Patakova P, Branska B, Sedlar K, Vasylkivska M, Jureckova K, Kolek J, Koscova P, Provaznik I.	Sci Rep	10.1038/s41598-018-37679-0	2019
Genetics	Genomic comparison of Clostridium species with the potential of utilizing red algal biomass for biobutanol production.	Sun C, Zhang S, Xin F, Shanmugam S, Wu YR.	Biotechnol Biofuels	10.1186/s13068-018-1044-9	2018
	Beyond Intracellular Accumulation of Polyhydroxyalkanoates: Chiral Hydroxyalkanoic Acids and Polymer Secretion.	Yanez L, Conejeros R, Vergara-Fernandez A, Scott F.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00248	2020
	Uncultured Microorganisms and Their Functions in the Fermentation Systems of Traditional Chinese Fermented Foods.	Wang J, Hao S, Ren Q.	Foods	10.3390/foods12142691	2023
Enzymology	A tyrosyl-dimanganese coupled spin system is the native metalloradical cofactor of the R2F subunit of the ribonucleotide reductase of Corynebacterium ammoniagenes.	Cox N, Ogata H, Stolle P, Reijerse E, Auling G, Lubitz W.	J Am Chem Soc	10.1021/ja1036995	2010
Metabolism	Flexibility and constraint: Evolutionary remodeling of the sporulation initiation pathway in Firmicutes.	Davidson P, Eutsey R, Redler B, Hiller NL, Laub MT, Durand D.	PLoS Genet	10.1371/journal.pgen.1007470	2018
Biotechnology	XynDZ5: A New Thermostable GH10 Xylanase.	Zarafeta D, Galanopoulou AP, Leni ME, Kaili SI, Chegkazi MS, Chrysina ED, Kolisis FN, Hatzinikolaou DG, Skretas G.	Front Microbiol	10.3389/fmicb.2020.00545	2020
	The Physiological Functions of AbrB on Sporulation, Biofilm Formation and Carbon Source Utilization in Clostridium tyrobutyricum.	Luo K, Guo X, Zhang H, Fu H, Wang J.	Bioengineering (Basel)	10.3390/bioengineering9100575	2022
Enzymology	Enhanced butanol production by optimization of medium parameters using Clostridium acetobutylicum YM1.	Al-Shorgani NKN, Shukor H, Abdeshahian P, Kalil MS, Yusoff WMW, Hamid AA.	Saudi J Biol Sci	10.1016/j.sjbs.2016.02.017	2018
Metabolism	Disruption of the acetate kinase (ack) gene of Clostridium acetobutylicum results in delayed acetate production.	Kuit W, Minton NP, Lopez-Contreras AM, Eggink G.	Appl Microbiol Biotechnol	10.1007/s00253-011-3848-4	2012
	Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker.	Heap JT, Ehsaan M, Cooksley CM, Ng YK, Cartman ST, Winzer K, Minton NP.	Nucleic Acids Res	10.1093/nar/gkr1321	2012
Metabolism	Metabolic engineering of microorganisms for the production of higher alcohols.	Choi YJ, Lee J, Jang YS, Lee SY.	mBio	10.1128/mbio.01524-14	2014
	Unique genetic cassettes in a Thermoanaerobacterium contribute to simultaneous conversion of cellulose and monosugars into butanol.	Li T, Zhang C, Yang KL, He J.	Sci Adv	10.1126/sciadv.1701475	2018
	The Role of Metabolic Engineering Technologies for the Production of Fatty Acids in Yeast.	Ullah N, Shahzad K, Wang M.	Biology (Basel)	10.3390/biology10070632	2021
	Comprehensive investigations of biobutanol production by a non-acetone and 1,3-propanediol generating Clostridium strain from glycerol and polysaccharides.	Xin F, Wang C, Dong W, Zhang W, Wu H, Ma J, Jiang M.	Biotechnol Biofuels	10.1186/s13068-016-0641-8	2016
	A comparison of three pH control methods for revealing effects of undissociated butyric acid on specific butanol production rate in batch fermentation of Clostridium acetobutylicum.	Yang X, Tu M, Xie R, Adhikari S, Tong Z.	AMB Express	10.1186/2191-0855-3-3	2013
Enzymology	Heterologous Gene Regulation in Clostridia: Rationally Designed Gene Regulation for Industrial and Medical Applications.	Zhang Y, Bailey TS, Kubiak AM, Lambin P, Theys J.	ACS Synth Biol	10.1021/acssynbio.2c00401	2022
	Developing controllable hypermutable Clostridium cells through manipulating its methyl-directed mismatch repair system.	Luan G, Cai Z, Gong F, Dong H, Lin Z, Zhang Y, Li Y.	Protein Cell	10.1007/s13238-013-3079-9	2013
Genetics	Genome Editing in Bacteria: CRISPR-Cas and Beyond.	Arroyo-Olarte RD, Bravo Rodriguez R, Morales-Rios E.	Microorganisms	10.3390/microorganisms9040844	2021
Metabolism	Butanol production from crystalline cellulose by cocultured Clostridium thermocellum and Clostridium saccharoperbutylacetonicum N1-4.	Nakayama S, Kiyoshi K, Kadokura T, Nakazato A.	Appl Environ Microbiol	10.1128/aem.00706-11	2011
Metabolism	Fermentation of oxidized hexose derivatives by Clostridium acetobutylicum.	Servinsky MD, Liu S, Gerlach ES, Germane KL, Sund CJ.	Microb Cell Fact	10.1186/s12934-014-0139-7	2014
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	Potential Role of the Host-Derived Cell-Wall Binding Domain of Endolysin CD16/50L as a Molecular Anchor in Preservation of Uninfected Clostridioides difficile for New Rounds of Phage Infection.	Phothichaisri W, Chankhamhaengdecha S, Janvilisri T, Nuadthaisong J, Phetruen T, Fagan RP, Chanarat S.	Microbiol Spectr	10.1128/spectrum.02361-21	2022
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Metabolism	Pleiotropic functions of catabolite control protein CcpA in Butanol-producing Clostridium acetobutylicum.	Ren C, Gu Y, Wu Y, Zhang W, Yang C, Yang S, Jiang W.	BMC Genomics	10.1186/1471-2164-13-349	2012
Transcriptome	Sigma Factor Regulated Cellular Response in a Non-solvent Producing Clostridium beijerinckii Degenerated Strain: A Comparative Transcriptome Analysis.	Zhang Y, Jiao S, Lv J, Du R, Yan X, Wan C, Zhang R, Han B.	Front Microbiol	10.3389/fmicb.2017.00023	2017
Metabolism	An Efficient New Process for the Selective Production of Odd-Chain Carboxylic Acids by Simple Carbon Elongation Using Megasphaera hexanoica.	Kim H, Jeon BS, Sang BI.	Sci Rep	10.1038/s41598-019-48591-6	2019
Metabolism	Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase.	Dopkins BJ, Tipton PA, Thoden JB, Holden HM.	Biochemistry	10.1021/acs.biochem.6b00536	2016
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Metabolism	Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria.	Letzel AC, Pidot SJ, Hertweck C.	BMC Genomics	10.1186/1471-2164-15-983	2014
Metabolism	Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data.	Galan-Vasquez E, Perez-Rueda E.	Front Mol Biosci	10.3389/fmolb.2019.00139	2019
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Metabolism	Characterization of an N-acetylmuramic acid/N-acetylglucosamine kinase of Clostridium acetobutylicum.	Reith J, Berking A, Mayer C.	J Bacteriol	10.1128/jb.05514-11	2011
Metabolism	Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum.	Steiner E, Dago AE, Young DI, Heap JT, Minton NP, Hoch JA, Young M.	Mol Microbiol	10.1111/j.1365-2958.2011.07608.x	2011
Genetics	Barriers to genome editing with CRISPR in bacteria.	Vento JM, Crook N, Beisel CL.	J Ind Microbiol Biotechnol	10.1007/s10295-019-02195-1	2019
Metabolism	Engineering of vitamin prototrophy in Clostridium ljungdahlii and Clostridium autoethanogenum.	Annan FJ, Al-Sinawi B, Humphreys CM, Norman R, Winzer K, Kopke M, Simpson SD, Minton NP, Henstra AM.	Appl Microbiol Biotechnol	10.1007/s00253-019-09763-6	2019
Metabolism	Transport of magnesium by a bacterial Nramp-related gene.	Shin JH, Wakeman CA, Goodson JR, Rodionov DA, Freedman BG, Senger RS, Winkler WC.	PLoS Genet	10.1371/journal.pgen.1004429	2014
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Metabolism	Formic acid triggers the "Acid Crash" of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.	Wang S, Zhang Y, Dong H, Mao S, Zhu Y, Wang R, Luan G, Li Y.	Appl Environ Microbiol	10.1128/aem.01835-10	2011
Metabolism	Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture.	Millat T, Janssen H, Bahl H, Fischer RJ, Wolkenhauer O.	Microb Biotechnol	10.1111/1751-7915.12033	2013
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Metabolism	Genomic analysis of carbon monoxide utilization and butanol production by Clostridium carboxidivorans strain P7.	Bruant G, Levesque MJ, Peter C, Guiot SR, Masson L.	PLoS One	10.1371/journal.pone.0013033	2010
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Metabolism	Characterization of a glucosamine/glucosaminide N-acetyltransferase of Clostridium acetobutylicum.	Reith J, Mayer C.	J Bacteriol	10.1128/jb.05519-11	2011
Metabolism	2,4,6-trinitrotoluene reduction by an Fe-only hydrogenase in Clostridium acetobutylicum.	Watrous MM, Clark S, Kutty R, Huang S, Rudolph FB, Hughes JB, Bennett GN.	Appl Environ Microbiol	10.1128/aem.69.3.1542-1547.2003	2003
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Metabolism	Deciphering Clostridium tyrobutyricum Metabolism Based on the Whole-Genome Sequence and Proteome Analyses.	Lee J, Jang YS, Han MJ, Kim JY, Lee SY.	mBio	10.1128/mbio.00743-16	2016
Metabolism	Pathway for H2O2 and O2 detoxification in Clostridium acetobutylicum.	Riebe O, Fischer RJ, Wampler DA, Kurtz DM, Bahl H.	Microbiology (Reading)	10.1099/mic.0.022756-0	2009
Phylogeny	Common and phylogenetically widespread coding for peptides by bacterial small RNAs.	Friedman RC, Kalkhof S, Doppelt-Azeroual O, Mueller SA, Chovancova M, von Bergen M, Schwikowski B.	BMC Genomics	10.1186/s12864-017-3932-y	2017
Enzymology	Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.	Rohman A, van Oosterwijk N, Puspaningsih NNT, Dijkstra BW.	PLoS One	10.1371/journal.pone.0196358	2018
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Biotechnology	Bacterial xylanases: biology to biotechnology.	Chakdar H, Kumar M, Pandiyan K, Singh A, Nanjappan K, Kashyap PL, Srivastava AK.	3 Biotech	10.1007/s13205-016-0457-z	2016
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Enzymology	Coupling of denaturing high-performance liquid chromatography and terminal restriction fragment length polymorphism with precise fragment sizing for microbial community profiling and characterization.	Penny C, Nadalig T, Alioua M, Gruffaz C, Vuilleumier S, Bringel F.	Appl Environ Microbiol	10.1128/aem.01556-09	2010
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Metabolism	Deciphering the Regulation of the Mannitol Operon Paves the Way for Efficient Production of Mannitol in Lactococcus lactis.	Xiao H, Bang-Berthelsen CH, Jensen PR, Solem C.	Appl Environ Microbiol	10.1128/aem.00779-21	2021
Metabolism	Riboswitch (T-box)-mediated control of tRNA-dependent amidation in Clostridium acetobutylicum rationalizes gene and pathway redundancy for asparagine and asparaginyl-trnaasn synthesis.	Saad NY, Schiel B, Braye M, Heap JT, Minton NP, Durre P, Becker HD.	J Biol Chem	10.1074/jbc.m111.332304	2012
Metabolism	Metabolic engineering of Escherichia coli for enhanced production of (R)- and (S)-3-hydroxybutyrate.	Tseng HC, Martin CH, Nielsen DR, Prather KL.	Appl Environ Microbiol	10.1128/aem.02667-08	2009
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Metabolism	Distribution of glucan-branching enzymes among prokaryotes.	Suzuki E, Suzuki R.	Cell Mol Life Sci	10.1007/s00018-016-2243-9	2016
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Metabolism	Novel cold-adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases.	Kim EY, Oh KH, Lee MH, Kang CH, Oh TK, Yoon JH.	Appl Environ Microbiol	10.1128/aem.01400-08	2009
Metabolism	Reconstruction of xylose utilization pathway and regulons in Firmicutes.	Gu Y, Ding Y, Ren C, Sun Z, Rodionov DA, Zhang W, Yang S, Yang C, Jiang W.	BMC Genomics	10.1186/1471-2164-11-255	2010
Metabolism	Isolation of transcription initiation signals from Corynebacterium ammoniagenes and comparison of their gene expression levels in C. ammoniagenes and Escherichia coli.	Paik JE, Lee BR.	Biotechnol Lett	10.1023/a:1024947222046	2003
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Pathogenicity	Meta-analysis and functional validation of nutritional requirements of solventogenic Clostridia growing under butanol stress conditions and coutilization of D-glucose and D-xylose.	Heluane H, Evans MR, Dagher SF, Bruno-Barcena JM.	Appl Environ Microbiol	10.1128/aem.00116-11	2011
Pathogenicity	The role of PerR in O2-affected gene expression of Clostridium acetobutylicum.	Hillmann F, Doring C, Riebe O, Ehrenreich A, Fischer RJ, Bahl H.	J Bacteriol	10.1128/jb.00351-09	2009
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Metabolism	Nitrogen Fixation in Pozol, a Traditional Fermented Beverage.	Rizo J, Rogel MA, Guillen D, Wacher C, Martinez-Romero E, Encarnacion S, Sanchez S, Rodriguez-Sanoja R.	Appl Environ Microbiol	10.1128/aem.00588-20	2020
Metabolism	Systems-level metabolic flux profiling elucidates a complete, bifurcated tricarboxylic acid cycle in Clostridium acetobutylicum.	Amador-Noguez D, Feng XJ, Fan J, Roquet N, Rabitz H, Rabinowitz JD.	J Bacteriol	10.1128/jb.00490-10	2010
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Genetics	Amino acid catabolism-directed biofuel production in Clostridium sticklandii: An insight into model-driven systems engineering.	Sangavai C, Chellapandi P.	Biotechnol Rep (Amst)	10.1016/j.btre.2017.11.002	2017
Metabolism	Mass spectrometric revival of an l-rhamnose- and d-galactose-specific lectin from a lost strain of Streptomyces.	Fujita-Yamaguchi Y, Bagramyan K, Yamaguchi Y, Ikeda A, Dohmae N, Hong TB, Kalkum M.	J Biol Chem	10.1074/jbc.m117.812719	2018
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Metabolism	Reduction of uranium(VI) to uranium(IV) by clostridia.	Gao W, Francis AJ.	Appl Environ Microbiol	10.1128/aem.00239-08	2008
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Metabolism	Engineering Escherichia coli for Microbial Production of Butanone.	Srirangan K, Liu X, Akawi L, Bruder M, Moo-Young M, Chou CP.	Appl Environ Microbiol	10.1128/aem.03964-15	2016
Metabolism	Impact of Lignocellulose Pretreatment By-Products on S. cerevisiae Strain Ethanol Red Metabolism during Aerobic and An-aerobic Growth.	Klosowski G, Mikulski D.	Molecules	10.3390/molecules26040806	2021
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Metabolism	O2 and reactive oxygen species detoxification complex, composed of O2-responsive NADH:rubredoxin oxidoreductase-flavoprotein A2-desulfoferrodoxin operon enzymes, rubperoxin, and rubredoxin, in Clostridium acetobutylicum.	Kawasaki S, Sakai Y, Takahashi T, Suzuki I, Niimura Y.	Appl Environ Microbiol	10.1128/aem.01425-08	2009
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Metabolism	DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5.	Tomas CA, Alsaker KV, Bonarius HP, Hendriksen WT, Yang H, Beamish JA, Paredes CJ, Papoutsakis ET.	J Bacteriol	10.1128/jb.185.15.4539-4547.2003	2003
Pathogenicity	Discovery and Characterization of a Nitroreductase Capable of Conferring Bacterial Resistance to Chloramphenicol.	Crofts TS, Sontha P, King AO, Wang B, Biddy BA, Zanolli N, Gaumnitz J, Dantas G.	Cell Chem Biol	10.1016/j.chembiol.2019.01.007	2019
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Metabolism	Characterization of the CipA scaffolding protein and in vivo production of a minicellulosome in Clostridium acetobutylicum.	Sabathe F, Soucaille P.	J Bacteriol	10.1128/jb.185.3.1092-1096.2003	2003
Metabolism	Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow.	Mueller TJ, Berla BM, Pakrasi HB, Maranas CD.	BMC Syst Biol	10.1186/1752-0509-7-142	2013
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Metabolism	Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii.	Wang Y, Li X, Milne CB, Janssen H, Lin W, Phan G, Hu H, Jin YS, Price ND, Blaschek HP.	Appl Environ Microbiol	10.1128/aem.00971-13	2013
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Enzymology	Alpha-amylase starch binding domains: cooperative effects of binding to starch granules of multiple tandemly arranged domains.	Guillen D, Santiago M, Linares L, Perez R, Morlon J, Ruiz B, Sanchez S, Rodriguez-Sanoja R.	Appl Environ Microbiol	10.1128/aem.02628-06	2007
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Metabolism	Clostridium acetobutylicum 8-oxoguanine DNA glycosylase (Ogg) differs from eukaryotic Oggs with respect to opposite base discrimination.	Robey-Bond SM, Barrantes-Reynolds R, Bond JP, Wallace SS, Bandaru V.	Biochemistry	10.1021/bi800162e	2008
Enzymology	A multidomain fusion protein in Listeria monocytogenes catalyzes the two primary activities for glutathione biosynthesis.	Gopal S, Borovok I, Ofer A, Yanku M, Cohen G, Goebel W, Kreft J, Aharonowitz Y.	J Bacteriol	10.1128/jb.187.11.3839-3847.2005	2005
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Metabolism	The Rnf Complex Is an Energy-Coupled Transhydrogenase Essential To Reversibly Link Cellular NADH and Ferredoxin Pools in the Acetogen Acetobacterium woodii.	Westphal L, Wiechmann A, Baker J, Minton NP, Muller V.	J Bacteriol	10.1128/jb.00357-18	2018
Genetics	Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing.	Tourlousse DM, Yoshiike S, Ohashi A, Matsukura S, Noda N, Sekiguchi Y.	Nucleic Acids Res	10.1093/nar/gkw984	2017
	Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment.	Dobrijevic D, Abraham AL, Jamet A, Maguin E, van de Guchte M.	PLoS One	10.1371/journal.pone.0159030	2016
Enzymology	Crystallization and preliminary X-ray analysis of the small subunit (R2F) of native ribonucleotide reductase from Corynebacterium ammoniagenes.	Ogata H, Stolle P, Stehr M, Auling G, Lubitz W.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309109028978	2009
	Valorization of date palm (Phoenix dactylifera) fruit processing by-products and wastes using bioprocess technology - Review.	Chandrasekaran M, Bahkali AH.	Saudi J Biol Sci	10.1016/j.sjbs.2012.12.004	2013
Pathogenicity	Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.	Wang Q, Venkataramanan KP, Huang H, Papoutsakis ET, Wu CH.	BMC Syst Biol	10.1186/1752-0509-7-120	2013
Enzymology	Production of (R)-3-hydroxybutyric acid by Arxula adeninivorans.	Biernacki M, Riechen J, Hahnel U, Roick T, Baronian K, Bode R, Kunze G.	AMB Express	10.1186/s13568-016-0303-z	2017
Enzymology	Temperature-sensitive mutants of Corynebacterium ammoniagenes ATCC 6872 with a defective large subunit of the manganese-containing ribonucleotide reductase.	Luo C, Hansen J, Auling G.	Arch Microbiol	10.1007/s002030050450	1997
Enzymology	Model-driven intracellular redox status modulation for increasing isobutanol production in Escherichia coli.	Liu J, Qi H, Wang C, Wen J.	Biotechnol Biofuels	10.1186/s13068-015-0291-2	2015
	Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation.	Kolek J, Sedlar K, Provaznik I, Patakova P.	Biotechnol Biofuels	10.1186/s13068-016-0436-y	2016
	A synthetic system links FeFe-hydrogenases to essential E. coli sulfur metabolism.	Barstow B, Agapakis CM, Boyle PM, Grandl G, Silver PA, Wintermute EH.	J Biol Eng	10.1186/1754-1611-5-7	2011
Metabolism	Pyruvate:ferredoxin oxidoreductase is coupled to light-independent hydrogen production in Chlamydomonas reinhardtii.	Noth J, Krawietz D, Hemschemeier A, Happe T.	J Biol Chem	10.1074/jbc.m112.429985	2013
	Adaptive responses to oxygen stress in obligatory anaerobes Clostridium acetobutylicum and Clostridium aminovalericum.	Kawasaki S, Watamura Y, Ono M, Watanabe T, Takeda K, Niimura Y.	Appl Environ Microbiol	10.1128/aem.71.12.8442-8450.2005	2005
	Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.	Traag BA, Pugliese A, Eisen JA, Losick R.	J Bacteriol	10.1128/jb.01778-12	2013
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Transcriptome	Pectinolytic lyases: a comprehensive review of sources, category, property, structure, and catalytic mechanism of pectate lyases and pectin lyases.	Zheng L, Xu Y, Li Q, Zhu B.	Bioresour Bioprocess	10.1186/s40643-021-00432-z	2021
	Integrated in situ gas stripping-salting-out process for high-titer acetone-butanol-ethanol production from sweet sorghum bagasse.	Wen H, Chen H, Cai D, Gong P, Zhang T, Wu Z, Gao H, Li Z, Qin P, Tan T.	Biotechnol Biofuels	10.1186/s13068-018-1137-5	2018
	Modulation of Carbon and Electron Flow in Clostridium acetobutylicum by Iron Limitation and Methyl Viologen Addition.	Peguin S, Soucaille P.	Appl Environ Microbiol	10.1128/aem.61.1.403-405.1995	1995
Metabolism	Characterization of a family 43 beta-xylosidase from the xylooligosaccharide utilizing putative probiotic Weissella sp. strain 92.	Falck P, Linares-Pasten JA, Adlercreutz P, Karlsson EN.	Glycobiology	10.1093/glycob/cwv092	2016
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Genetics	Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195.	Nonaka H, Keresztes G, Shinoda Y, Ikenaga Y, Abe M, Naito K, Inatomi K, Furukawa K, Inui M, Yukawa H.	J Bacteriol	10.1128/jb.188.6.2262-2274.2006	2006
	An alternative path for the evolution of biological nitrogen fixation.	Boyd ES, Hamilton TL, Peters JW.	Front Microbiol	10.3389/fmicb.2011.00205	2011
Metabolism	Regulation of Clostridium acetobutylicum metabolism as revealed by mixed-substrate steady-state continuous cultures: role of NADH/NAD ratio and ATP pool.	Girbal L, Soucaille P.	J Bacteriol	10.1128/jb.176.21.6433-6438.1994	1994
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Transcriptome	The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration.	Hartwich K, Poehlein A, Daniel R.	PLoS One	10.1371/journal.pone.0051662	2012
	Improved efficiency of butanol production by absorbent fermentation with a renewable carrier.	He Q, Chen H.	Biotechnol Biofuels	10.1186/1754-6834-6-121	2013
Metabolism	Transmembrane pH of Clostridium acetobutylicum is inverted (more acidic inside) when the in vivo activity of hydrogenase is decreased.	Girbal L, Vasconcelos I, Soucaille P.	J Bacteriol	10.1128/jb.176.19.6146-6147.1994	1994
Enzymology	Isolation and characterization of a filamentous viruslike particle from Clostridium acetobutylicum NCIB 6444.	Kim AY, Blaschek HP.	J Bacteriol	10.1128/jb.173.2.530-535.1991	1991
Metabolism	Effects of propionate and acetate additions on solvent production in batch cultures of Clostridium acetobutylicum.	Husemann MH, Papoutsakis ET.	Appl Environ Microbiol	10.1128/aem.56.5.1497-1500.1990	1990
Biotechnology	An insight into the bioelectrochemical photoreduction of CO₂ to value-added chemicals.	Gupta P, Noori MT, Nunez AE, Verma N.	iScience	10.1016/j.isci.2021.102294	2021
Metabolism	Cyclopropane fatty acids are involved in organic solvent tolerance but not in acid stress resistance in Pseudomonas putida DOT-T1E.	Pini CV, Bernal P, Godoy P, Ramos JL, Segura A.	Microb Biotechnol	10.1111/j.1751-7915.2009.00084.x	2009
	Development of a metabolic pathway transfer and genomic integration system for the syngas-fermenting bacterium Clostridium ljungdahlii.	Philipps G, de Vries S, Jennewein S.	Biotechnol Biofuels	10.1186/s13068-019-1448-1	2019
Metabolism	Tracking the evolution of the bacterial choline-binding domain: molecular characterization of the Clostridium acetobutylicum NCIB 8052 cspA gene.	Sanchez-Beato AR, Ronda C, Garcia JL.	J Bacteriol	10.1128/jb.177.4.1098-1103.1995	1995
Pathogenicity	Comparative phenotypic analysis and genome sequence of Clostridium beijerinckii SA-1, an offspring of NCIMB 8052.	Sandoval-Espinola WJ, Makwana ST, Chinn MS, Thon MR, Azcarate-Peril MA, Bruno-Barcena JM.	Microbiology (Reading)	10.1099/mic.0.069534-0	2013
	Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes.	Tyurin MV, Sullivan CR, Lynd LR.	Appl Environ Microbiol	10.1128/aem.71.12.8069-8076.2005	2005
	Versatile selective evolutionary pressure using synthetic defect in universal metabolism.	Selles Vidal L, Murray JW, Heap JT.	Nat Commun	10.1038/s41467-021-27266-9	2021
Enzymology	Expanded Diversity and Phylogeny of mer Genes Broadens Mercury Resistance Paradigms and Reveals an Origin for MerA Among Thermophilic Archaea.	Christakis CA, Barkay T, Boyd ES.	Front Microbiol	10.3389/fmicb.2021.682605	2021
Genetics	Genome Editing in Clostridium saccharoperbutylacetonicum N1-4 with the CRISPR-Cas9 System.	Wang S, Dong S, Wang P, Tao Y, Wang Y.	Appl Environ Microbiol	10.1128/aem.00233-17	2017
	Oxygen and hydrogen peroxide in the early evolution of life on earth: in silico comparative analysis of biochemical pathways.	Slesak I, Slesak H, Kruk J.	Astrobiology	10.1089/ast.2011.0704	2012
	The cold-induced two-component system CBO0366/CBO0365 regulates metabolic pathways with novel roles in group I Clostridium botulinum ATCC 3502 cold tolerance.	Dahlsten E, Zhang Z, Somervuo P, Minton NP, Lindstrom M, Korkeala H.	Appl Environ Microbiol	10.1128/aem.03173-13	2014
Metabolism	Evolutionary Adaptation of the Essential tRNA Methyltransferase TrmD to the Signaling Molecule 3',5'-cAMP in Bacteria.	Zhang Y, Agrebi R, Bellows LE, Collet JF, Kaever V, Grundling A.	J Biol Chem	10.1074/jbc.m116.758896	2017
Metabolism	Detection and quantification of functional genes of cellulose- degrading, fermentative, and sulfate-reducing bacteria and methanogenic archaea.	Pereyra LP, Hiibel SR, Prieto Riquelme MV, Reardon KF, Pruden A.	Appl Environ Microbiol	10.1128/aem.01285-09	2010
Enzymology	Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase.	Xu T, Li Y, Shi Z, Hemme CL, Li Y, Zhu Y, Van Nostrand JD, He Z, Zhou J.	Appl Environ Microbiol	10.1128/aem.00873-15	2015
Genetics	Phenotypic and Genomic Analysis of Clostridium beijerinckii NRRL B-598 Mutants With Increased Butanol Tolerance.	Vasylkivska M, Branska B, Sedlar K, Jureckova K, Provaznik I, Patakova P.	Front Bioeng Biotechnol	10.3389/fbioe.2020.598392	2020
Pathogenicity	Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum.	Tomas CA, Beamish J, Papoutsakis ET.	J Bacteriol	10.1128/jb.186.7.2006-2018.2004	2004
Metabolism	Production of 3-hydroxypropionic acid in engineered Methylobacterium extorquens AM1 and its reassimilation through a reductive route.	Yang YM, Chen WJ, Yang J, Zhou YM, Hu B, Zhang M, Zhu LP, Wang GY, Yang S.	Microb Cell Fact	10.1186/s12934-017-0798-2	2017
Pathogenicity	Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress.	Alsaker KV, Spitzer TR, Papoutsakis ET.	J Bacteriol	10.1128/jb.186.7.1959-1971.2004	2004
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Enzymology	Isolation of a single-stranded plasmid from Clostridium acetobutylicum NCIB 6444.	Kim AY, Vertes AA, Blaschek HP.	Appl Environ Microbiol	10.1128/aem.56.6.1725-1728.1990	1990
Metabolism	Molecular breeding of advanced microorganisms for biofuel production.	Sakuragi H, Kuroda K, Ueda M.	J Biomed Biotechnol	10.1155/2011/416931	2011
Transcriptome	Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq.	Wang Y, Li X, Mao Y, Blaschek HP.	BMC Genomics	10.1186/1471-2164-12-479	2011
Metabolism	Engineering redox homeostasis to develop efficient alcohol-producing microbial cell factories.	Zhao C, Zhao Q, Li Y, Zhang Y.	Microb Cell Fact	10.1186/s12934-017-0728-3	2017
	Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus.	Smyth DS, Robinson DA.	J Bacteriol	10.1128/jb.00352-09	2009
Enzymology	Purification and characterization of two extremely thermostable enzymes, phosphate acetyltransferase and acetate kinase, from the hyperthermophilic eubacterium Thermotoga maritima.	Bock AK, Glasemacher J, Schmidt R, Schonheit P.	J Bacteriol	10.1128/jb.181.6.1861-1867.1999	1999
Metabolism	The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum.	Venkataramanan KP, Jones SW, McCormick KP, Kunjeti SG, Ralston MT, Meyers BC, Papoutsakis ET.	BMC Genomics	10.1186/1471-2164-14-849	2013
Genetics	Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum.	Stringer SC, Carter AT, Webb MD, Wachnicka E, Crossman LC, Sebaihia M, Peck MW.	BMC Genomics	10.1186/1471-2164-14-333	2013
Phylogeny	Group II introns in eubacteria and archaea: ORF-less introns and new varieties.	Simon DM, Clarke NA, McNeil BA, Johnson I, Pantuso D, Dai L, Chai D, Zimmerly S.	RNA	10.1261/rna.1056108	2008
Metabolism	Evolution of transmembrane protein kinases implicated in coordinating remodeling of gram-positive peptidoglycan: inside versus outside.	Jones G, Dyson P.	J Bacteriol	10.1128/jb.00800-06	2006
Transcriptome	Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum.	Alsaker KV, Papoutsakis ET.	J Bacteriol	10.1128/jb.187.20.7103-7118.2005	2005
Metabolism	Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.	Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A.	BMC Genomics	10.1186/1471-2164-11-555	2010
Metabolism	Efficient alpha, beta-motif finder for identification of phenotype-related functional modules.	Schmidt MC, Rocha AM, Padmanabhan K, Chen Z, Scott K, Mihelcic JR, Samatova NF.	BMC Bioinformatics	10.1186/1471-2105-12-440	2011
	Development of both type I-B and type II CRISPR/Cas genome editing systems in the cellulolytic bacterium Clostridium thermocellum.	Walker JE, Lanahan AA, Zheng T, Toruno C, Lynd LR, Cameron JC, Olson DG, Eckert CA.	Metab Eng Commun	10.1016/j.mec.2019.e00116	2020
Metabolism	Enhancement of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) accumulation in Arxula adeninivorans by stabilization of production.	Biernacki M, Marzec M, Roick T, Patz R, Baronian K, Bode R, Kunze G.	Microb Cell Fact	10.1186/s12934-017-0751-4	2017
Genetics	Solvent-Producing Clostridia Revisited.	Jones DT, Schulz F, Roux S, Brown SD.	Microorganisms	10.3390/microorganisms11092253	2023
	Engineering yeast with bifunctional minicellulosome and cellodextrin pathway for co-utilization of cellulose-mixed sugars.	Fan LH, Zhang ZJ, Mei S, Lu YY, Li M, Wang ZY, Yang JG, Yang ST, Tan TW.	Biotechnol Biofuels	10.1186/s13068-016-0554-6	2016
	Development and application of a method for counterselectable in-frame deletion in Clostridium perfringens.	Nariya H, Miyata S, Suzuki M, Tamai E, Okabe A.	Appl Environ Microbiol	10.1128/aem.01572-10	2011
Metabolism	Assessment of heterologous butyrate and butanol pathway activity by measurement of intracellular pathway intermediates in recombinant Escherichia coli.	Fischer CR, Tseng HC, Tai M, Prather KL, Stephanopoulos G.	Appl Microbiol Biotechnol	10.1007/s00253-010-2749-2	2010
	Analysis of biodegradation performance of furfural and 5-hydroxymethylfurfural by Amorphotheca resinae ZN1.	Ran H, Zhang J, Gao Q, Lin Z, Bao J.	Biotechnol Biofuels	10.1186/1754-6834-7-51	2014
	Transmembrane pH gradient and membrane potential in Clostridium acetobutylicum during growth under acetogenic and solventogenic conditions.	Huang L, Gibbins LN, Forsberg CW.	Appl Environ Microbiol	10.1128/aem.50.4.1043-1047.1985	1985
	Sporulation of Clostridium acetobutylicum P262 in a Defined Medium.	Long S, Jones DT, Woods DR.	Appl Environ Microbiol	10.1128/aem.45.4.1389-1393.1983	1983
Enzymology	Efficient recombinant expression and secretion of a thermostable GH26 mannan endo-1,4-beta-mannosidase from Bacillus licheniformis in Escherichia coli.	Songsiriritthigul C, Buranabanyat B, Haltrich D, Yamabhai M.	Microb Cell Fact	10.1186/1475-2859-9-20	2010
Enzymology	Structure and activity of Paenibacillus polymyxa xyloglucanase from glycoside hydrolase family 44.	Ariza A, Eklof JM, Spadiut O, Offen WA, Roberts SM, Besenmatter W, Friis EP, Skjot M, Wilson KS, Brumer H, Davies G.	J Biol Chem	10.1074/jbc.m111.262345	2011
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Metabolism	Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol.	Serrano-Bermudez LM, Gonzalez Barrios AF, Maranas CD, Montoya D.	BMC Syst Biol	10.1186/s12918-017-0434-0	2017
	The Potential of Single-Cell Oils Derived From Filamentous Fungi as Alternative Feedstock Sources for Biodiesel Production.	Mhlongo SI, Ezeokoli OT, Roopnarain A, Ndaba B, Sekoai PT, Habimana O, Pohl CH.	Front Microbiol	10.3389/fmicb.2021.637381	2021
Metabolism	Engineered respiro-fermentative metabolism for the production of biofuels and biochemicals from fatty acid-rich feedstocks.	Dellomonaco C, Rivera C, Campbell P, Gonzalez R.	Appl Environ Microbiol	10.1128/aem.00046-10	2010
	A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community.	Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM.	Microbiome	10.1186/2049-2618-1-8	2013
Metabolism	In vitro assembly of multiple DNA fragments using successive hybridization.	Jiang X, Yang J, Zhang H, Zou H, Wang C, Xian M.	PLoS One	10.1371/journal.pone.0030267	2012
Enzymology	Purification and properties of an acetoacetyl coenzyme A-reacting phosphotransbutyrylase from Clostridium beijerinckii ("Clostridium butylicum") NRRL B593.	Thompson DK, Chen JS.	Appl Environ Microbiol	10.1128/aem.56.3.607-613.1990	1990
Pathogenicity	Improving isopropanol tolerance and production of Clostridium beijerinckii DSM 6423 by random mutagenesis and genome shuffling.	Gerando HM, Fayolle-Guichard F, Rudant L, Millah SK, Monot F, Lopes Ferreira N, Lopez-Contreras AM.	Appl Microbiol Biotechnol	10.1007/s00253-016-7302-5	2016
	Isolation and characterization of butanol-resistant mutants of Clostridium acetobutylicum.	Hermann M, Fayolle F, Marchal R, Podvin L, Sebald M, Vandecasteele JP.	Appl Environ Microbiol	10.1128/aem.50.5.1238-1243.1985	1985
Enzymology	Evolution and biochemistry of family 4 glycosidases: implications for assigning enzyme function in sequence annotations.	Hall BG, Pikis A, Thompson J.	Mol Biol Evol	10.1093/molbev/msp162	2009
Metabolism	Adhesion and growth rate of Clostridium cellulolyticum ATCC 35319 on crystalline cellulose.	Gelhaye E, Petitdemange H, Gay R.	J Bacteriol	10.1128/jb.175.11.3452-3458.1993	1993
Phylogeny	Evolutionary analyses of non-genealogical bonds produced by introgressive descent.	Bapteste E, Lopez P, Bouchard F, Baquero F, McInerney JO, Burian RM.	Proc Natl Acad Sci U S A	10.1073/pnas.1206541109	2012
Phylogeny	Design and evaluation of a Lactobacillus manihotivorans species-specific rRNA-targeted hybridization probe and its application to the study of sour cassava fermentation.	Ampe F.	Appl Environ Microbiol	10.1128/aem.66.5.2224-2226.2000	2000
Metabolism	Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic system.	King PW, Posewitz MC, Ghirardi ML, Seibert M.	J Bacteriol	10.1128/jb.188.6.2163-2172.2006	2006
Enzymology	Structure of an endo-beta-1,4-glucanase gene from Clostridium acetobutylicum P262 showing homology with endoglucanase genes from Bacillus spp.	Zappe H, Jones WA, Jones DT, Woods DR.	Appl Environ Microbiol	10.1128/aem.54.5.1289-1292.1988	1988
Metabolism	Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes.	Accetto T, Avgustin G.	PLoS One	10.1371/journal.pone.0022914	2011
	Altered Electron Flow in Continuous Cultures of Clostridium acetobutylicum Induced by Viologen Dyes.	Rao G, Mutharasan R.	Appl Environ Microbiol	10.1128/aem.53.6.1232-1235.1987	1987
Metabolism	Structure and mechanism of the rebeccamycin sugar 4'-O-methyltransferase RebM.	Singh S, McCoy JG, Zhang C, Bingman CA, Phillips GN, Thorson JS.	J Biol Chem	10.1074/jbc.m800503200	2008
Metabolism	Regulation and butanol inhibition of D-xylose and D-glucose uptake in Clostridium acetobutylicum.	Ounine K, Petitdemange H, Raval G, Gay R.	Appl Environ Microbiol	10.1128/aem.49.4.874-878.1985	1985
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Metabolism	Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs.	Boekhorst J, de Been MW, Kleerebezem M, Siezen RJ.	J Bacteriol	10.1128/jb.187.14.4928-4934.2005	2005
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Genetics	A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation.	Gharechahi J, Salekdeh GH.	Biotechnol Biofuels	10.1186/s13068-018-1214-9	2018
Enzymology	Purification and properties of 3-hydroxybutyryl-coenzyme A dehydrogenase from Clostridium beijerinckii ("Clostridium butylicum") NRRL B593.	Colby GD, Chen JS.	Appl Environ Microbiol	10.1128/aem.58.10.3297-3302.1992	1992
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Phylogeny	The ability of Aneurinibacillus migulanus (Bacillus brevis) to produce the antibiotic gramicidin S is correlated with phenotype variation.	Berditsch M, Afonin S, Ulrich AS.	Appl Environ Microbiol	10.1128/aem.00881-07	2007
Metabolism	Acetone-butanol fermentation revisited.	Jones DT, Woods DR.	Microbiol Rev	10.1128/mr.50.4.484-524.1986	1986
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Metabolism	Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides.	McMurdie PJ, Hug LA, Edwards EA, Holmes S, Spormann AM.	BMC Genomics	10.1186/1471-2164-12-287	2011
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	Characterization of hemicellulase and cellulase from the extremely thermophilic bacterium Caldicellulosiruptor owensensis and their potential application for bioconversion of lignocellulosic biomass without pretreatment.	Peng X, Qiao W, Mi S, Jia X, Su H, Han Y.	Biotechnol Biofuels	10.1186/s13068-015-0313-0	2015
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Metabolism	The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis.	Fricke WF, Seedorf H, Henne A, Kruer M, Liesegang H, Hedderich R, Gottschalk G, Thauer RK.	J Bacteriol	10.1128/jb.188.2.642-658.2006	2006
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Metabolism	Highly hydrolytic reuteransucrase from probiotic Lactobacillus reuteri strain ATCC 55730.	Kralj S, Stripling E, Sanders P, van Geel-Schutten GH, Dijkhuizen L.	Appl Environ Microbiol	10.1128/aem.71.7.3942-3950.2005	2005
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Metabolism	Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon.	Louis P, Duncan SH, McCrae SI, Millar J, Jackson MS, Flint HJ.	J Bacteriol	10.1128/jb.186.7.2099-2106.2004	2004
Genetics	Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.	Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.	Microbiome	10.1186/s40168-016-0221-y	2017
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Metabolism	Light-driven amino acid uptake in Streptococcus cremoris or Clostridium acetobutylicum membrane vesicles fused with liposomes containing bacterial reaction centers.	Crielaard W, Driessen AJ, Molenaar D, Hellingwerf KJ, Konings WN.	J Bacteriol	10.1128/jb.170.4.1820-1824.1988	1988
Metabolism	Phenolic acid-mediated regulation of the padC gene, encoding the phenolic acid decarboxylase of Bacillus subtilis.	Tran NP, Gury J, Dartois V, Nguyen TK, Seraut H, Barthelmebs L, Gervais P, Cavin JF.	J Bacteriol	10.1128/jb.01936-07	2008
Pathogenicity	Effects of butanol on Clostridium acetobutylicum.	Bowles LK, Ellefson WL.	Appl Environ Microbiol	10.1128/aem.50.5.1165-1170.1985	1985
Enzymology	S434F in NrdE generates the thermosensitive phenotype of corynebacterium ammoniagenes CH31 and enhances thermolability by increasing the surface hydrophobicity of the NrdE(Ts) protein.	Elhariry HM, Meens J, Stehr M, Auling G.	Appl Environ Microbiol	10.1128/aem.71.9.5582-5586.2005	2005
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Metabolism	Purification and characterization of a primary-secondary alcohol dehydrogenase from two strains of Clostridium beijerinckii.	Ismaiel AA, Zhu CX, Colby GD, Chen JS.	J Bacteriol	10.1128/jb.175.16.5097-5105.1993	1993
	Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing.	Ventura M, Zink R, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.71.1.487-500.2005	2005
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Enzymology	Purification and characterization of an oxygen-labile, NAD-dependent alcohol dehydrogenase from Desulfovibrio gigas.	Hensgens CM, Vonck J, Van Beeumen J, van Bruggen EF, Hansen TA.	J Bacteriol	10.1128/jb.175.10.2859-2863.1993	1993
	Control of Carbon and Electron Flow in Clostridium acetobutylicum Fermentations: Utilization of Carbon Monoxide to Inhibit Hydrogen Production and to Enhance Butanol Yields.	Kim BH, Bellows P, Datta R, Zeikus JG.	Appl Environ Microbiol	10.1128/aem.48.4.764-770.1984	1984
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Metabolism	Dehydratase mediated 1-propanol production in metabolically engineered Escherichia coli.	Jain R, Yan Y.	Microb Cell Fact	10.1186/1475-2859-10-97	2011
Genetics	Inference of self-regulated transcriptional networks by comparative genomics.	Cornish JP, Matthews F, Thomas JR, Erill I.	Evol Bioinform Online	10.4137/ebo.s9205	2012
Enzymology	Structure and Evolution of the Archaeal Lipid Synthesis Enzyme sn-Glycerol-1-phosphate Dehydrogenase.	Carbone V, Schofield LR, Zhang Y, Sang C, Dey D, Hannus IM, Martin WF, Sutherland-Smith AJ, Ronimus RS.	J Biol Chem	10.1074/jbc.m115.647461	2015
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Metabolism	Regulation of expression of cellulosomes and noncellulosomal (hemi)cellulolytic enzymes in Clostridium cellulovorans during growth on different carbon sources.	Han SO, Cho HY, Yukawa H, Inui M, Doi RH.	J Bacteriol	10.1128/jb.186.13.4218-4227.2004	2004
Genetics	Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis.	Feng X, Mouttaki H, Lin L, Huang R, Wu B, Hemme CL, He Z, Zhang B, Hicks LM, Xu J, Zhou J, Tang YJ.	Appl Environ Microbiol	10.1128/aem.00715-09	2009
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Enzymology	Purification and characterization of an extracellular alpha-amylase from Clostridium perfringens type A.	Shih NJ, Labbe RG.	Appl Environ Microbiol	10.1128/aem.61.5.1776-1779.1995	1995
Genetics	The genomic basis for the evolution of a novel form of cellular reproduction in the bacterium Epulopiscium.	Miller DA, Suen G, Clements KD, Angert ER.	BMC Genomics	10.1186/1471-2164-13-265	2012
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Metabolism	Lactate racemization as a rescue pathway for supplying D-lactate to the cell wall biosynthesis machinery in Lactobacillus plantarum.	Goffin P, Deghorain M, Mainardi JL, Tytgat I, Champomier-Verges MC, Kleerebezem M, Hols P.	J Bacteriol	10.1128/jb.187.19.6750-6761.2005	2005
Enzymology	Truncation of peptide deformylase reduces the growth rate and stabilizes solvent production in Clostridium beijerinckii NCIMB 8052.	Evans VJ, Liyanage H, Ravagnani A, Young M, Kashket ER.	Appl Environ Microbiol	10.1128/aem.64.5.1780-1785.1998	1998
Metabolism	Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense.	Spaepen S, Versees W, Gocke D, Pohl M, Steyaert J, Vanderleyden J.	J Bacteriol	10.1128/jb.00830-07	2007
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Metabolism	Exploring the mechanism of biocatalyst inhibition in microbial desulfurization.	Abin-Fuentes A, Mohamed Mel-S, Wang DI, Prather KL.	Appl Environ Microbiol	10.1128/aem.02696-13	2013
Metabolism	Characterization of the key step for light-driven hydrogen evolution in green algae.	Winkler M, Kuhlgert S, Hippler M, Happe T.	J Biol Chem	10.1074/jbc.m109.053496	2009
Phylogeny	Fourteen-genome comparison identifies DNA markers for severe-disease-associated strains of Clostridium difficile.	Forgetta V, Oughton MT, Marquis P, Brukner I, Blanchette R, Haub K, Magrini V, Mardis ER, Gerding DN, Loo VG, Miller MA, Mulvey MR, Rupnik M, Dascal A, Dewar K.	J Clin Microbiol	10.1128/jcm.00391-11	2011
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Enzymology	Purification and characterization of the extracellular alpha-amylase from Streptococcus bovis JB1.	Freer SN.	Appl Environ Microbiol	10.1128/aem.59.5.1398-1402.1993	1993
Genetics	The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of firmicutes and the organism's intracellular adaptations.	Ogawa Y, Ooka T, Shi F, Ogura Y, Nakayama K, Hayashi T, Shimoji Y.	J Bacteriol	10.1128/jb.01500-10	2011
Metabolism	Carbon source preference in chemosynthetic hot spring communities.	Urschel MR, Kubo MD, Hoehler TM, Peters JW, Boyd ES.	Appl Environ Microbiol	10.1128/aem.00511-15	2015
Enzymology	Purification and properties of thermostable xylanase and beta-xylosidase produced by a newly isolated Bacillus stearothermophilus strain.	Nanmori T, Watanabe T, Shinke R, Kohno A, Kawamura Y.	J Bacteriol	10.1128/jb.172.12.6669-6672.1990	1990
	Utilization of enzymatically hydrolyzed wood hemicelluloses by microorganisms for production of liquid fuels.	Saddler JN, Yu EK, Mes-Hartree M, Levitin N, Brownell HH.	Appl Environ Microbiol	10.1128/aem.45.1.153-160.1983	1983
	The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501.	Zhan Y, Yan Y, Deng Z, Chen M, Lu W, Lu C, Shang L, Yang Z, Zhang W, Wang W, Li Y, Ke Q, Lu J, Xu Y, Zhang L, Xie Z, Cheng Q, Elmerich C, Lin M.	Proc Natl Acad Sci U S A	10.1073/pnas.1604514113	2016
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Genetics	Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.	Gullert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.	Biotechnol Biofuels	10.1186/s13068-016-0534-x	2016
Metabolism	The genes for three xylan-degrading activities from Bacteroides ovatus are clustered in a 3.8-kilobase region.	Whitehead TR, Hespell RB.	J Bacteriol	10.1128/jb.172.5.2408-2412.1990	1990
	A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins.	Babu MM, Priya ML, Selvan AT, Madera M, Gough J, Aravind L, Sankaran K.	J Bacteriol	10.1128/jb.188.8.2761-2773.2006	2006
Genetics	Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.	Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.	J Mol Evol	10.1007/s00239-011-9441-8	2011
	Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus.	Shah N, Gaupp R, Moriyama H, Eskridge KM, Moriyama EN, Somerville GA.	BMC Genomics	10.1186/1471-2164-14-524	2013
Enzymology	Towards designer cellulosomes in Clostridia: mannanase enrichment of the cellulosomes produced by Clostridium cellulolyticum.	Perret S, Belaich A, Fierobe HP, Belaich JP, Tardif C.	J Bacteriol	10.1128/jb.186.19.6544-6552.2004	2004
	Genome-wide dynamic transcriptional profiling in Clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq.	Wang Y, Li X, Mao Y, Blaschek HP.	BMC Genomics	10.1186/1471-2164-13-102	2012
	Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages.	Samson JE, Moineau S.	Appl Environ Microbiol	10.1128/aem.00796-10	2010
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
Metabolism	Identification of surprisingly diverse type IV pili, across a broad range of gram-positive bacteria.	Imam S, Chen Z, Roos DS, Pohlschroder M.	PLoS One	10.1371/journal.pone.0028919	2011
Enzymology	Thermophilic and alkaliphilic Actinobacteria: biology and potential applications.	Shivlata L, Satyanarayana T.	Front Microbiol	10.3389/fmicb.2015.01014	2015
Phylogeny	Comparative genomic analyses of the bacterial phosphotransferase system.	Barabote RD, Saier MH.	Microbiol Mol Biol Rev	10.1128/mmbr.69.4.608-634.2005	2005
Enzymology	Purification and characterization of alpha-L-arabinofuranosidase from Bacillus stearothermophilus T-6.	Gilead S, Shoham Y.	Appl Environ Microbiol	10.1128/aem.61.1.170-174.1995	1995
Metabolism	Control of hemA expression in Rhodobacter sphaeroides 2.4.1: effect of a transposon insertion in the hbdA gene.	Fales L, Kryszak L, Zeilstra-Ryalls J.	J Bacteriol	10.1128/jb.183.5.1568-1576.2001	2001
Metabolism	Protein tyrosine O-glycosylation--a rather unexplored prokaryotic glycosylation system.	Zarschler K, Janesch B, Pabst M, Altmann F, Messner P, Schaffer C.	Glycobiology	10.1093/glycob/cwq035	2010
	Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.	Peabody MA, Van Rossum T, Lo R, Brinkman FS.	BMC Bioinformatics	10.1186/s12859-015-0788-5	2015
Metabolism	Novel type V staphylococcal cassette chromosome mec driven by a novel cassette chromosome recombinase, ccrC.	Ito T, Ma XX, Takeuchi F, Okuma K, Yuzawa H, Hiramatsu K.	Antimicrob Agents Chemother	10.1128/aac.48.7.2637-2651.2004	2004
	Applied in situ product recovery in ABE fermentation.	Outram V, Lalander CA, Lee JGM, Davies ET, Harvey AP.	Biotechnol Prog	10.1002/btpr.2446	2017
Metabolism	Clostridium beijerinckii cells expressing Neocallimastix patriciarum glycoside hydrolases show enhanced lichenan utilization and solvent production.	Lopez-Contreras AM, Smidt H, van der Oost J, Claassen PA, Mooibroek H, de Vos WM.	Appl Environ Microbiol	10.1128/aem.67.11.5127-5133.2001	2001
Enzymology	Biochemical and molecular characterization of the oxidative branch of glycerol utilization by Citrobacter freundii.	Daniel R, Stuertz K, Gottschalk G.	J Bacteriol	10.1128/jb.177.15.4392-4401.1995	1995
Phylogeny	Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.	Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.	Appl Environ Microbiol	10.1128/aem.00380-09	2009
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	A shift from oral to blood pH is a stimulus for adaptive gene expression of Streptococcus gordonii CH1 and induces protection against oxidative stress and enhanced bacterial growth by expression of msrA.	Vriesema AJ, Dankert J, Zaat SA.	Infect Immun	10.1128/iai.68.3.1061-1068.2000	2000
Metabolism	The bacterial phosphoenolpyruvate:carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions.	Deutscher J, Ake FM, Derkaoui M, Zebre AC, Cao TN, Bouraoui H, Kentache T, Mokhtari A, Milohanic E, Joyet P.	Microbiol Mol Biol Rev	10.1128/mmbr.00001-14	2014
Phylogeny	Evolution of bacterial protein-tyrosine kinases and their relaxed specificity toward substrates.	Shi L, Ji B, Kolar-Znika L, Boskovic A, Jadeau F, Combet C, Grangeasse C, Franjevic D, Talla E, Mijakovic I.	Genome Biol Evol	10.1093/gbe/evu056	2014
Enzymology	Purification and characterization of a thermostable beta-xylosidase from Thermoanaerobacter ethanolicus.	Shao W, Wiegel J.	J Bacteriol	10.1128/jb.174.18.5848-5853.1992	1992
Metabolism	CsrA-FliW interaction governs flagellin homeostasis and a checkpoint on flagellar morphogenesis in Bacillus subtilis.	Mukherjee S, Yakhnin H, Kysela D, Sokoloski J, Babitzke P, Kearns DB.	Mol Microbiol	10.1111/j.1365-2958.2011.07822.x	2011
	Regulation of neurotoxin production and sporulation by a Putative agrBD signaling system in proteolytic Clostridium botulinum.	Cooksley CM, Davis IJ, Winzer K, Chan WC, Peck MW, Minton NP.	Appl Environ Microbiol	10.1128/aem.03038-09	2010
Metabolism	O2 reactions at the six-iron active site (H-cluster) in [FeFe]-hydrogenase.	Lambertz C, Leidel N, Havelius KG, Noth J, Chernev P, Winkler M, Happe T, Haumann M.	J Biol Chem	10.1074/jbc.m111.283648	2011
Genetics	Minimum contradiction matrices in whole genome phylogenies.	Thuillard M.	Evol Bioinform Online	10.4137/ebo.s909	2008
Metabolism	Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.	Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND.	BMC Syst Biol	10.1186/1752-0509-5-130	2011
Phylogeny	Characterization of a trinucleotide repeat sequence (CGG)5 and potential use in restriction fragment length polymorphism typing of Mycobacterium tuberculosis.	Otsuka Y, Parniewski P, Zwolska Z, Kai M, Fujino T, Kirikae F, Toyota E, Kudo K, Kuratsuji T, Kirikae T.	J Clin Microbiol	10.1128/jcm.42.8.3538-3548.2004	2004
Enzymology	Identification of the Butyrivibrio fibrisolvens xylosidase gene (xylB) coding region and its expression in Escherichia coli.	Sewell GW, Utt EA, Hespell RB, Mackenzie KF, Ingram LO.	Appl Environ Microbiol	10.1128/aem.55.2.306-311.1989	1989
Metabolism	Catabolism of benzoate and phthalate in Rhodococcus sp. strain RHA1: redundancies and convergence.	Patrauchan MA, Florizone C, Dosanjh M, Mohn WW, Davies J, Eltis LD.	J Bacteriol	10.1128/jb.187.12.4050-4063.2005	2005
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Enzymology	Electron microscopic analysis and structural characterization of novel NADP(H)-containing methanol: N,N'-dimethyl-4-nitrosoaniline oxidoreductases from the gram-positive methylotrophic bacteria Amycolatopsis methanolica and Mycobacterium gastri MB19.	Bystrykh LV, Vonck J, van Bruggen EF, van Beeumen J, Samyn B, Govorukhina NI, Arfman N, Duine JA, Dijkhuizen L.	J Bacteriol	10.1128/jb.175.6.1814-1822.1993	1993
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Enzymology	A [FeFe] Hydrogenase-Rubrerythrin Chimeric Enzyme Functions to Couple H₂ Oxidation to Reduction of H₂O₂ in the Foodborne Pathogen Clostridium perfringens.	Taylor J, Mulder DW, Corrigan PS, Ratzloff MW, Irizarry Gonzalez N, Lubner CE, King PW, Silakov A.	J Am Chem Soc	10.1021/jacs.4c18425	2025
Metabolism	Effects of Spo0A on Clostridium acetobutylicum with an emphasis on biofilm formation.	Yang Z, Wang Z, Lei M, Zhu J, Yang Y, Wu S, Yu B, Niu H, Ying H, Liu D, Wang Y.	World J Microbiol Biotechnol	10.1007/s11274-020-02859-6	2020
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Enzymology	Application of a Synthetic Ferredoxin-Inspired [4Fe4S]-Peptide Maquette as the Redox Partner for an [FeFe]-Hydrogenase.	Bombana A, Shanmugam M, Collison D, Kibler AJ, Newton GN, Jager CM, Croft AK, Morra S, Mitchell NJ.	Chembiochem	10.1002/cbic.202300250	2023
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Metabolism	Efficient butanol production under aerobic conditions by coculture of Clostridium acetobutylicum and Nesterenkonia sp. strain F.	Ebrahimi E, Amiri H, Asadollahi MA, Shojaosadati SA.	Biotechnol Bioeng	10.1002/bit.27221	2020
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Metabolism	Recent advances in n-butanol and butyrate production using engineered Clostridium tyrobutyricum.	Bao T, Feng J, Jiang W, Fu H, Wang J, Yang ST.	World J Microbiol Biotechnol	10.1007/s11274-020-02914-2	2020
Metabolism	A novel regulatory pathway consisting of a two-component system and an ABC-type transporter contributes to butanol tolerance in Clostridium acetobutylicum.	Yang Y, Lang N, Zhang L, Wu H, Wu H, Jiang W, Gu Y.	Appl Microbiol Biotechnol	10.1007/s00253-020-10555-6	2020
Metabolism	Biofilm Polysaccharide Display Platform: A Natural, Renewable, and Biocompatible Material for Improved Lipase Performance.	Dong H, Zhang W, Wang Y, Liu D, Wang P.	J Agric Food Chem	10.1021/acs.jafc.9b07209	2020
Metabolism	Using poly(vinyldodecylimidazolium bromide) for the in-situ product recovery of n-butanol.	Vincent RH, Parent JS, Daugulis AJ.	Biotechnol Prog	10.1002/btpr.2926	2020
Genetics	Improvement of the Genome Editing Tools Based on 5FC/5FU Counter Selection in Clostridium acetobutylicum	Boudignon E, Foulquier C, Soucaille P.	Microorganisms		2023
Phylogeny	16S rRNA Sequencing Analysis Uncovers Dose-Dependent Cupric Chloride Effects on Silkworm Gut Microbiome Composition and Diversity.	Rong W, Wei Y, Chen Y, Huang L, Huang S, Lv Y, Guan D, Li X.	Animals (Basel)	10.3390/ani14243634	2024
	Multi-omics assessment of gut microbiota in circadian rhythm disorders: a cross-sectional clinical study.	Tian Y, Zhao R, Xiao S, Chen L, Cheng Y, Meng W, Tang Z, Cai Y, Xiao Z, Yi A, Chen M, Zhao X, Ruan G, Wei Y.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1524987	2025
Enzymology	Capturing methane with recombinant soluble methane monooxygenase and recombinant methyl-coenzyme M reductase.	Sanchez-Torres V, Wood TK.	Microb Biotechnol	10.1111/1751-7915.70000	2024
Enzymology	Crystal Structure and Molecular Mechanism of Phosphotransbutyrylase from Clostridium acetobutylicum.	Kim S, Kim KJ.	J Microbiol Biotechnol	10.4014/jmb.2109.09036	2021
	Correction to: Butanol and butyric acid production from Saccharina japonica by Clostridium acetobutylicum and Clostridium tyrobutyricum with adaptive evolution.	Ra CH, Sunwoo IY, Nguyen TH, Sukwong P, Sirisuk P, Jeong GT, Kim SK.	Bioprocess Biosyst Eng	10.1007/s00449-019-02145-2	2019
Phylogeny	Effects of Salmonella Typhimurium Infection on the Gut Microbiota of Cherry Valley Meat Ducks.	Zheng Y, Pan X, Hou J, Shi W, Sun S, Song M, Gao Z.	Microorganisms	10.3390/microorganisms12030602	2024
Metabolism	Flavin secretion of Clostridium acetobutylicum in a bioelectrochemical system - Is an iron limitation involved?	Engel M, Bayer H, Holtmann D, Tippkotter N, Ulber R.	Bioelectrochemistry	10.1016/j.bioelechem.2019.05.014	2019
Phylogeny	Calcium butyrate efficacy in pediatric irritable bowel syndrome: Randomized placebo-controlled multiomics-based clinical trial.	Cristofori F, Calabrese FM, Iacobellis I, Santamaria M, Celano G, Ferrocino I, Di Sabato E, Pergola R, Dargenio VN, Paulucci L, De Angelis M, Francavilla R.	J Pediatr Gastroenterol Nutr	10.1002/jpn3.70154	2025
Pathogenicity	A Clostridioides difficile cell-free gene expression system for prototyping and gene expression analysis.	Zeng J, Wang H, Xu Y, Han J, Li Y, Wen S, Wu C, Li D, Liu Z, Zhang X, Tian G-B, Dong M.	Appl Environ Microbiol	10.1128/aem.01566-24	2025
Metabolism	Nutrient modulation based process engineering strategy for improved butanol production from Clostridium acetobutylicum.	Ahlawat S, Kaushal M, Palabhanvi B, Muthuraj M, Goswami G, Das D.	Biotechnol Prog	10.1002/btpr.2771	2019
Metabolism	Butanol and butyric acid production from Saccharina japonica by Clostridium acetobutylicum and Clostridium tyrobutyricum with adaptive evolution.	Ra CH, Sunwoo IY, Nguyen TH, Sukwong P, Sirisuk P, Jeong GT, Kim SK.	Bioprocess Biosyst Eng	10.1007/s00449-018-02063-9	2019
	Integrated processes for production of cellulosic and hemicellulosic biobutanol from sweet sorghum bagasse using autohydrolysis	Khalili F, Amiri H.	Industrial crops and products.	10.1016/j.indcrop.2019.111918	2020
Metabolism	Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol.	Eiben CB, Tian T, Thompson MG, Mendez-Perez D, Kaplan N, Goyal G, Chiniquy J, Hillson NJ, Lee TS, Keasling JD.	ACS Synth Biol	10.1021/acssynbio.9b00402	2020
Genetics	Genome sequence analysis of the temperate bacteriophage TBP2 of the solvent producer Clostridium saccharoperbutylacetonicum N1-4 (HMT, ATCC 27021).	Schuler MA, Stegmann BA, Poehlein A, Daniel R, Durre P.	FEMS Microbiol Lett	10.1093/femsle/fnaa103	2020
	Gut microbiome signatures predict 5-ASA efficacy in ulcerative colitis.	Dang Y, Xu X, Ma J, Zhou M, Xu C, Huang X, Xu F, Wang Z, Shi H, Zhang S.	iScience	10.1016/j.isci.2025.112568	2025
	The role of gut microbiota in predicting the weight loss following laparoscopic sleeve gastrectomy.	Chen J, Shen B, Shen H, Zhu L, Yu H, Tong Y, Yu W.	Front Microbiol	10.3389/fmicb.2025.1560368	2025
	Efficient isopropanol biosynthesis by engineered Escherichia coli using biologically produced acetate from syngas fermentation.	Yang H, Zhang C, Lai N, Huang B, Fei P, Ding D, Hu P, Gu Y, Wu H, Wu H.	Bioresour Technol	10.1016/j.biortech.2019.122337	2020
Metabolism	Generating dihydrogen by tethering an [FeFe]hydrogenase via a molecular wire to the A_1A/A_1B sites of photosystem I.	Gorka M, Golbeck JH.	Photosynth Res	10.1007/s11120-019-00685-y	2020
	Unveiling Microbial Diversity: Raman Spectroscopy's Discrimination of Clostridium and Related Genera.	Salbreiter M, Wagenhaus A, Rosch P, Popp J.	Anal Chem	10.1021/acs.analchem.4c03280	2024
	Exploring the Influence of pH on the Dynamics of Acetone-Butanol-Ethanol Fermentation.	Kumar M, Saini S, Gayen K.	Microorganisms	10.3390/microorganisms11061610	2023
Metabolism	Acetone, butanol, and ethanol production from the green seaweed Enteromorpha intestinalis via the separate hydrolysis and fermentation.	Nguyen TH, Sunwoo IY, Ra CH, Jeong GT, Kim SK.	Bioprocess Biosyst Eng	10.1007/s00449-018-2045-6	2019
Metabolism	Improvement of butanol production in Clostridium acetobutylicum through enhancement of NAD(P)H availability.	Qi F, Thakker C, Zhu F, Pena M, San KY, Bennett GN.	J Ind Microbiol Biotechnol	10.1007/s10295-018-2068-7	2018
Metabolism	Curcumin degradation in a soil microorganism: Screening and characterization of a beta-diketone hydrolase.	Hashimoto Y, Ishigami K, Hassaninasab A, Kishi K, Kumano T, Kobayashi M.	J Biol Chem	10.1016/j.jbc.2024.107647	2024
Metabolism	Membrane assisted continuous production of solvents with integrated solvent removal using liquid-liquid extraction.	Survase SA, Zebroski R, Bayuadri C, Wang Z, Adamos G, Nagy G, Pylkkanen V.	Bioresour Technol	10.1016/j.biortech.2019.02.024	2019
Metabolism	Simultaneous organosolv pretreatment and detoxification of municipal solid waste for efficient biobutanol production.	Farmanbordar S, Amiri H, Karimi K.	Bioresour Technol	10.1016/j.biortech.2018.09.017	2018
	Methanol bioconversion into C3, C4, and C5 platform chemicals by the yeast Ogataea polymorpha.	Wefelmeier K, Schmitz S, Kosters BJ, Liebal UW, Blank LM.	Microb Cell Fact	10.1186/s12934-023-02283-z	2024
	Enhanced hydrogen production from lignocellulosic substrates via bioaugmentation with Clostridium strains	Valdez-Vazquez I, Castillo-Rubio LG, Perez-Rangel M, Sepulveda-Galvez A, Vargas A.	Industrial crops and products.	10.1016/j.indcrop.2019.05.023	2019
Enzymology	n-Butanol and ethanol production from cellulose by Clostridium cellulovorans overexpressing heterologous aldehyde/alcohol dehydrogenases.	Bao T, Zhao J, Li J, Liu X, Yang ST.	Bioresour Technol	10.1016/j.biortech.2019.121316	2019
Stress	Effects of heat stress and depressed feed intake on the cecal and ileal microbiota of broiler chickens.	Campos PM, Greene ES, Proszkowiec-Weglarz M, Dridi S.	Poult Sci	10.1016/j.psj.2025.105591	2025
	Dual function of ammonium acetate in acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.	Li S, Zhou Y, Luo Z, Cui Y, Xu Y, Lin L, Zhao M, Guo Y, Pang Z.	Bioresour Technol	10.1016/j.biortech.2018.07.055	2018
	Integrated co-cultivation and subsequent esterification: Harnessing Saccharomyces cerevisiae and Clostridium tyrobutyricum for streamlined ester production.	Oehlenschlager K, Lorenz M, Schepp E, Di Nonno S, Holtmann D, Ulber R.	Biotechnol Biofuels Bioprod	10.1186/s13068-025-02698-3	2025
	Structural and kinetic characterization of an acetoacetyl-Coenzyme A: acetate Coenzyme A transferase from the extreme thermophile Thermosipho melanesiensis.	Bing RG, Buhrman GK, Ford KC, Straub CT, Laemthong T, Rose RB, Adams MWW, Kelly RM.	Biochem J	10.1042/bcj20240747	2025
	Optimizing hexanoic acid biosynthesis in Saccharomyces cerevisiae for the de novo production of olivetolic acid.	Schafer KJ, Aras M, Boles E, Kayser O.	Biotechnol Biofuels Bioprod	10.1186/s13068-024-02586-2	2024
Metabolism	Anaerobic butanol production driven by oxygen-evolving photosynthesis using the heterocyst-forming multicellular cyanobacterium Anabaena sp. PCC 7120.	Higo A, Ehira S.	Appl Microbiol Biotechnol	10.1007/s00253-019-09635-z	2019
Metabolism	Multi-modular engineering for renewable production of isoprene via mevalonate pathway in Escherichia coli.	Liu CL, Dong HG, Zhan J, Liu X, Yang Y.	J Appl Microbiol	10.1111/jam.14204	2019
Pathogenicity	Age-diet interactions significantly influence intratumoral gene expression, gut microbiome signature and tumor microenvironment in colorectal cancer.	Soni S, Mittal P, Lo JH, Yang Y, Smbatyan G, Lee K, Wan J, Kumagai H, Yen K, Mehta HH, Miller B, Torres-Gonzalez L, Battaglin F, Shah UH, Bartolini M, Zhang W, Craig DW, Millstein J, Cohen P, Lenz HJ.	Neoplasia	10.1016/j.neo.2025.101245	2025
Enzymology	N-acetyltransferases from three different organisms displaying distinct selectivity toward hexosamines and N-terminal amine of peptides.	Zhang P, Liu P, Xu Y, Liang Y, Wang PG, Cheng J.	Carbohydr Res	10.1016/j.carres.2018.11.011	2019
	Metabolic engineering of Parageobacillus thermoglucosidasius for thermophilic production of 1-butanol.	Domenech P, Pogrebnyakov I, Jensen SI, Driessen JLSP, Riisager A, Nielsen AT.	AMB Express	10.1186/s13568-025-01879-5	2025
	Coproduction and enhancement of electricity and biobutanol using adsorption carrier solid-state fermentation.	Feng X, Wang L, Chen H.	Biotechnol Biofuels Bioprod	10.1186/s13068-022-02138-6	2022
	Electro-Enhanced Gas Fermentation for Bioproduction of Volatile Fatty Acids and Alcohols.	Hiebl C, Fuchs W.	Microorganisms	10.3390/microorganisms13020249	2025
Metabolism	Engineering Clostridium for improved solvent production: recent progress and perspective.	Cheng C, Bao T, Yang ST.	Appl Microbiol Biotechnol	10.1007/s00253-019-09916-7	2019
Phylogeny	Long-term follow-up of colorectal cancer screening attendees identifies differences in Phascolarctobacterium spp. using 16S rRNA and metagenome sequencing.	Bucher-Johannessen C, Birkeland EE, Vinberg E, Bemanian V, Hoff G, Berstad P, Rounge TB.	Front Oncol	10.3389/fonc.2023.1183039	2023
	The Sef1 transcription factor interacts with promoters of riboflavin structural genes in Candida famata.	Romanov S, Lyzak O, Sibirny A, Dmytruk K.	FEMS Yeast Res	10.1093/femsyr/foaf055	2025
	Electron receptor addition enhances butanol synthesis in ABE fermentation by Clostridium acetobutylicum.	Ding J, Luo H, Xie F, Wang H, Xu M, Shi Z.	Bioresour Technol	10.1016/j.biortech.2017.09.010	2018
Genetics	Insights into lignocellulose degradation: comparative genomics of anaerobic and cellulolytic Ruminiclostridium-type species.	You M, Zhao Q, Liu Y, Zhang W, Shen Z, Ren Z, Xu C.	Front Microbiol	10.3389/fmicb.2023.1288286	2023
Metabolism	Phototrophic hydrogen production from a clostridial [FeFe] hydrogenase expressed in the heterocysts of the cyanobacterium Nostoc PCC 7120.	Avilan L, Roumezi B, Risoul V, Bernard CS, Kpebe A, Belhadjhassine M, Rousset M, Brugna M, Latifi A.	Appl Microbiol Biotechnol	10.1007/s00253-018-8989-2	2018
Metabolism	Direct cell-to-cell exchange of matter in a synthetic Clostridium syntrophy enables CO₂ fixation, superior metabolite yields, and an expanded metabolic space.	Charubin K, Papoutsakis ET.	Metab Eng	10.1016/j.ymben.2018.10.006	2019
	Biochemical characterization and X-ray structural and mutagenic analyses of the putative autolysin CdCwlT33800 catalytic domain from Clostridioides difficile.	Sekiya H, Nonaka Y, Kamitori S, Tamai E.	Appl Environ Microbiol	10.1128/aem.01216-25	2025
	Stringency of Synthetic Promoter Sequences in Clostridium Revealed and Circumvented by Tuning Promoter Library Mutation Rates.	Mordaka PM, Heap JT.	ACS Synth Biol	10.1021/acssynbio.7b00398	2018
	Anaerobic HgII reduction is driven by cellular HgII-thiol interactions.	Lavoie NC, Poulain AJ.	Access Microbiol	10.1099/acmi.0.000932.v3	2025
Metabolism	Improving Fructose Utilization and Butanol Production by Clostridium acetobutylicum via Extracellular Redox Potential Regulation and Intracellular Metabolite Analysis.	Chen LJ, Wu YD, Xue C, Bai FW.	Biotechnol J	10.1002/biot.201700198	2017
Enzymology	Expression and Immunogenicity Analysis of Recombinant Leptospira Interrogans Surface Protein LigA in Mouse Model.	Chalesh A, Khaki P, Moradi Bidhendi S, Tebianian M, Tarnabi MT.	Vet Med Sci	10.1002/vms3.70360	2025
Metabolism	Biosynthesis of adipic acid via microaerobic hydrogenation of cis,cis-muconic acid by oxygen-sensitive enoate reductase.	Sun J, Raza M, Sun X, Yuan Q.	J Biotechnol	10.1016/j.jbiotec.2018.06.304	2018
Metabolism	Improvement of butanol production by the development and co-culture of C. acetobutylicum TSH1 and B. cereus TSH2.	Mi S, Gu C, Wu P, Liu H, Yan X, Li D, Tang X, Duan X, Wang G, Zhang J.	Appl Microbiol Biotechnol	10.1007/s00253-018-9151-x	2018
	Improving sustainable isopropanol production in engineered Escherichia coli W via oxygen limitation.	Kutscha R, Uhlir D, Pflugl S.	Microb Cell Fact	10.1186/s12934-025-02720-1	2025
Metabolism	Acetone-Butanol-Ethanol Production from Waste Seaweed Collected from Gwangalli Beach, Busan, Korea, Based on pH-Controlled and Sequential Fermentation Using Two Strains.	Sunwoo IY, Hau NT, Ra CH, Jeong GT, Kim SK.	Appl Biochem Biotechnol	10.1007/s12010-018-2711-9	2018
Metabolism	Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.	Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.	Microbiol Spectr	10.1128/spectrum.00829-23	2023
Metabolism	Towards acetone-uncoupled biofuels production in solventogenic Clostridium through reducing power conservation.	Liu D, Yang Z, Wang P, Niu H, Zhuang W, Chen Y, Wu J, Zhu C, Ying H, Ouyang P.	Metab Eng	10.1016/j.ymben.2018.03.012	2018
	Excessive Extracellular Ammonium Production by a Free-Living Nitrogen-Fixing Soil Clostridium sp. Strain.	Park S, Jang J.	Microorganisms	10.3390/microorganisms12122634	2024
	A site-differentiated [4Fe-4S] cluster controls electron transfer reactivity of Clostridium acetobutylicum [FeFe]-hydrogenase I.	Lubner CE, Artz JH, Mulder DW, Oza A, Ward RJ, Williams SG, Jones AK, Peters JW, Smalyukh II, Bharadwaj VS, King PW.	Chem Sci	10.1039/d1sc07120c	2022
Enzymology	Distinct Valence States of the [4Fe4S] Cluster Revealed in the Hydrogenase CrHydA1.	Heghmanns M, Yadav S, Boschmann S, Selve VR, Veliju A, Brocks C, Happe T, Pantazis DA, Kasanmascheff M.	Angew Chem Int Ed Engl	10.1002/anie.202424167	2025
	CO-Bridged H-Cluster Intermediates in the Catalytic Mechanism of [FeFe]-Hydrogenase CaI.	Ratzloff MW, Artz JH, Mulder DW, Collins RT, Furtak TE, King PW.	J Am Chem Soc	10.1021/jacs.8b03072	2018
Enzymology	Expression and Characterization of Levansucrase from Clostridium acetobutylicum.	Gao S, Qi X, Qi X, Hart DJ, Gao H, An Y.	J Agric Food Chem	10.1021/acs.jafc.6b05165	2017
	Associations between sleep and the gut microbiome in adults with colorectal cancer and their caregivers.	Barb JJ, Lee LJ, Ahmed A, Son EH, Nanda S, Yang L, Ban Y, Ting A, Tsai TC, Kim Y.	Sci Rep	10.1038/s41598-025-18402-2	2025
Metabolism	Recent advances and state-of-the-art strategies in strain and process engineering for biobutanol production by Clostridium acetobutylicum.	Xue C, Zhao J, Chen L, Yang ST, Bai F.	Biotechnol Adv	10.1016/j.biotechadv.2017.01.007	2017
Metabolism	Metabolic flexibility of a butyrate pathway mutant of Clostridium acetobutylicum.	Yoo M, Croux C, Meynial-Salles I, Soucaille P.	Metab Eng	10.1016/j.ymben.2017.01.011	2017
Metabolism	High-efficient n-butanol production by co-culturing Clostridium acetobutylicum and Saccharomyces cerevisiae integrated with butyrate fermentative supernatant addition.	Luo H, Zeng Q, Han S, Wang Z, Dong Q, Bi Y, Zhao Y.	World J Microbiol Biotechnol	10.1007/s11274-017-2246-1	2017
	High-efficiency bioconversion of kitchen garbage to biobutanol using an enzymatic cocktail procedure.	Chen H, Shen H, Su H, Chen H, Tan F, Lin J.	Bioresour Technol	10.1016/j.biortech.2017.09.056	2017
	Novel polycondensed biopolyamide generated from biomass-derived 4-aminohydrocinnamic acid.	Kawasaki Y, Aniruddha N, Minakawa H, Masuo S, Kaneko T, Takaya N.	Appl Microbiol Biotechnol	10.1007/s00253-017-8617-6	2018
	Antisense-acting riboswitches: A poorly characterized yet important model of transcriptional regulation in prokaryotic organisms.	Serrano-Gutierrez M, Merino E.	PLoS One	10.1371/journal.pone.0281744	2023
	Maximizing Biomass Production and Carotenoid-like Pigments Yield in Kocuria sediminis As04 Through Culture Optimization.	Lopez-Mora DJ, Flores-Davalos AG, Lorenzo-Santiago MA, Guardado-Fierros BG, Rodriguez-Campos J, Contreras-Ramos SM.	Microorganisms	10.3390/microorganisms13071555	2025
Metabolism	Enhanced butanol fermentation using metabolically engineered Clostridium acetobutylicum with ex situ recovery of butanol.	Lee SH, Kim S, Kim JY, Cheong NY, Kim KH.	Bioresour Technol	10.1016/j.biortech.2016.07.060	2016
Metabolism	Activation Thermodynamics and H/D Kinetic Isotope Effect of the H_ox to H_redH⁺ Transition in [FeFe] Hydrogenase.	Ratzloff MW, Wilker MB, Mulder DW, Lubner CE, Hamby H, Brown KA, Dukovic G, King PW.	J Am Chem Soc	10.1021/jacs.7b04216	2017
Metabolism	Enzymatic synthesis and semi-preparative isolation of N-acetylmuramic acid 6-phosphate.	Unsleber S, Borisova M, Mayer C.	Carbohydr Res	10.1016/j.carres.2017.04.005	2017
	Carbon 13-Metabolic Flux Analysis derived constraint-based metabolic modelling of Clostridium acetobutylicum in stressed chemostat conditions.	Wallenius J, Maaheimo H, Eerikainen T.	Bioresour Technol	10.1016/j.biortech.2016.07.137	2016
Metabolism	Fermentative hydrogen production in an up-flow anaerobic biofilm reactor inoculated with a co-culture of Clostridium acetobutylicum and Desulfovibrio vulgaris.	Barca C, Ranava D, Bauzan M, Ferrasse JH, Giudici-Orticoni MT, Soric A.	Bioresour Technol	10.1016/j.biortech.2016.09.072	2016
	CaCO3 supplementation alleviates the inhibition of formic acid on acetone/butanol/ethanol fermentation by Clostridium acetobutylicum	Qi G, Xiong L, Lin X, Huang C, Li H, Chen X, Chen X.	Biotechnol Lett		2017
	A two-stage strategy for methanogenesis suppression and rapid acetogenic biofilm formation in microbial electrosynthesis.	Ferretti J, Zegers MAJ, Zeppilli M, Jourdin L.	Front Microbiol	10.3389/fmicb.2025.1655259	2025
Enzymology	A (S)-3-Hydroxybutyrate Dehydrogenase Belonging to the 3-Hydroxyacyl-CoA Dehydrogenase Family Facilitates Hydroxyacid Degradation in Anaerobic Bacteria.	Zhou Y, Wei Y, Jiang L, Zhang Y, Jiao X.	Appl Environ Microbiol	10.1128/aem.00366-23	2023
Enzymology	Roles of the F-domain in [FeFe] hydrogenase.	Gauquelin C, Baffert C, Richaud P, Kamionka E, Etienne E, Guieysse D, Girbal L, Fourmond V, Andre I, Guigliarelli B, Leger C, Soucaille P, Meynial-Salles I.	Biochim Biophys Acta Bioenerg	10.1016/j.bbabio.2017.08.010	2018
	Inducible promoters of bacterial microcompartments improve the CRISPR/Cas9 tools for efficient metabolic engineering of Clostridium ljungdahlii.	Zhang J-Z, Li Y-Z, Xi Z-N, Zhang Y, Liu Z-Y, Ma X-Q, Li F-L.	Appl Environ Microbiol	10.1128/aem.02183-24	2025
	Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis.	Rivera Vazquez J, Trujillo E, Williams J, She F, Getahun F, Callaghan MM, Coon JJ, Amador-Noguez D.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02450-9	2024
Genetics	Single Crossover-Mediated Markerless Genome Engineering in Clostridium acetobutylicum.	Lee SH, Kim HJ, Shin YA, Kim KH, Lee SJ.	J Microbiol Biotechnol	10.4014/jmb.1512.12012	2016
Metabolism	Organism Engineering for the Bioproduction of the Triaminotrinitrobenzene (TATB) Precursor Phloroglucinol (PG).	Meyer A, Saaem I, Silverman A, Varaljay VA, Mickol R, Blum S, Tobias AV, Schwalm ND, Mojadedi W, Onderko E, Bristol C, Liu S, Pratt K, Casini A, Eluere R, Moser F, Drake C, Gupta M, Kelley-Loughnane N, Lucks JP, Akingbade KL, Lux MP, Glaven S, Crookes-Goodson W, Jewett MC, Gordon DB, Voigt CA.	ACS Synth Biol	10.1021/acssynbio.9b00393	2019
Metabolism	Hydrogen production from starch by co-culture of Clostridium acetobutylicum and Rhodobacter sphaeroides in one step hybrid dark- and photofermentation in repeated fed-batch reactor.	Zagrodnik R, Laniecki M.	Bioresour Technol	10.1016/j.biortech.2016.10.060	2017
	High Performance of Biohydrogen Production in Packed-Filter Bioreactor via Optimizing Packed-Filter Position.	Chu CY, Zheng JL, Chen TH, Bhuyar P.	Int J Environ Res Public Health	10.3390/ijerph18147462	2021
	Phenolic compounds removal from sweet sorghum grain for efficient biobutanol production without nutrient supplementation	Mirfakhar M, Asadollahi MA, Amiri H, Karimi K.	Industrial crops and products.	10.1016/j.indcrop.2017.06.028	2017
Metabolism	Intracellular metabolic changes of Clostridium acetobutylicum and promotion to butanol tolerance during biobutanol fermentation.	Wang YF, Tian J, Ji ZH, Song MY, Li H.	Int J Biochem Cell Biol	10.1016/j.biocel.2016.07.031	2016
	Efficient gene knockdown in Clostridium acetobutylicum by synthetic small regulatory RNAs.	Cho C, Lee SY.	Biotechnol Bioeng	10.1002/bit.26077	2017
Metabolism	Enhanced production of butanol and acetoin by heterologous expression of an acetolactate decarboxylase in Clostridium acetobutylicum.	Shen X, Liu D, Liu J, Wang Y, Xu J, Yang Z, Guo T, Niu H, Ying H.	Bioresour Technol	10.1016/j.biortech.2016.05.121	2016
Metabolism	Modelling the role of CtfA/B in reverse shift continuous culture experiments of Clostridium acetobutylicum.	Thorn GJ, King JR.	Math Biosci	10.1016/j.mbs.2016.03.003	2016
Metabolism	Cell growth behaviors of Clostridium acetobutylicum in a pervaporation membrane bioreactor for butanol fermentation.	Yao P, Xiao Z, Chen C, Li W, Deng Q.	Biotechnol Appl Biochem	10.1002/bab.1318	2016
Metabolism	Phage serine integrase-mediated genome engineering for efficient expression of chemical biosynthetic pathway in gas-fermenting Clostridium ljungdahlii.	Huang H, Chai C, Yang S, Jiang W, Gu Y.	Metab Eng	10.1016/j.ymben.2019.01.005	2019
Metabolism	Roles of three AbrBs in regulating two-phase Clostridium acetobutylicum fermentation.	Xue Q, Yang Y, Chen J, Chen L, Yang S, Jiang W, Gu Y.	Appl Microbiol Biotechnol	10.1007/s00253-016-7638-x	2016
	Effect of chemical pretreatments on corn stalk bagasse as immobilizing carrier of Clostridium acetobutylicum in the performance of a fermentation-pervaporation coupled system.	Cai D, Li P, Chen C, Wang Y, Hu S, Cui C, Qin P, Tan T.	Bioresour Technol	10.1016/j.biortech.2016.08.049	2016
Metabolism	Stable and enhanced gene expression in Clostridium acetobutylicum using synthetic untranslated regions with a stem-loop.	Lee J, Jang YS, Papoutsakis ET, Lee SY.	J Biotechnol	10.1016/j.jbiotec.2016.05.020	2016
	Differential Binding of NLRP3 to non-oxidized and Ox-mtDNA mediates NLRP3 Inflammasome Activation.	Cabral A, Cabral JE, Wang A, Zhang Y, Liang H, Nikbakht D, Corona L, Hoffman HM, McNulty R.	Commun Biol	10.1038/s42003-023-04817-y	2023
Metabolism	Bioconversion of waste office paper to hydrogen using pretreated rumen fluid inoculum.	Botta LS, Ratti RP, Sakamoto IK, Ramos LR, Silva EL, Varesche MB, Varesche MB.	Bioprocess Biosyst Eng	10.1007/s00449-016-1663-0	2016
Metabolism	Synergistic effect of calcium and zinc on glucose/xylose utilization and butanol tolerance of Clostridium acetobutylicum.	Wu Y, Xue C, Chen L, Yuan W, Bai F.	FEMS Microbiol Lett	10.1093/femsle/fnw023	2016
Metabolism	Enhanced butanol production from cassava with Clostridium acetobutylicum by genome shuffling.	Li SB, Qian Y, Liang ZW, Guo Y, Zhao MM, Pang ZW.	World J Microbiol Biotechnol	10.1007/s11274-016-2022-7	2016
Metabolism	CaCO₃ supplementation alleviates the inhibition of formic acid on acetone/butanol/ethanol fermentation by Clostridium acetobutylicum.	Qi G, Xiong L, Lin X, Huang C, Li H, Chen X, Chen X.	Biotechnol Lett	10.1007/s10529-016-2231-z	2017
Metabolism	Overexpression of two stress-responsive, small, non-coding RNAs, 6S and tmRNA, imparts butanol tolerance in Clostridium acetobutylicum.	Jones AJ, Venkataramanan KP, Papoutsakis T.	FEMS Microbiol Lett	10.1093/femsle/fnw063	2016
	Enhancing starch accumulation/production in Chlorococcum humicola through sulphur limitation and 2,4- D treatment for butanol production.	Narchonai G, Arutselvan C, LewisOscar F, Thajuddin N.	Biotechnol Rep (Amst)	10.1016/j.btre.2020.e00528	2020
Metabolism	Alternative non-chromatographic method for alcohols determination in Clostridium acetobutylicum fermentations.	Noriega-Medrano LJ, Vega-Estrada J, Ortega-Lopez J, Ruiz-Medrano R, Cristiani-Urbina E, Montes-Horcasitas Mdel C.	J Microbiol Methods	10.1016/j.mimet.2016.05.001	2016
Metabolism	Retargeting a Dual-Acting sRNA for Multiple mRNA Transcript Regulation.	Lahiry A, Stimple SD, Wood DW, Lease RA.	ACS Synth Biol	10.1021/acssynbio.6b00261	2017
Genetics	A New Shuttle Plasmid That Stably Replicates in Clostridium acetobutylicum.	Lee SH, Kwon MA, Choi S, Kim S, Kim J, Shin YA, Kim KH.	J Microbiol Biotechnol	10.4014/jmb.1504.04070	2015
Metabolism	Butanol production employing fed-batch fermentation by Clostridium acetobutylicum GX01 using alkali-pretreated sugarcane bagasse hydrolysed by enzymes from Thermoascus aurantiacus QS 7-2-4.	Pang ZW, Lu W, Zhang H, Liang ZW, Liang JJ, Du LW, Duan CJ, Feng JX.	Bioresour Technol	10.1016/j.biortech.2016.04.013	2016
	Comparative transcriptomic analysis of Clostridium acetobutylicum biofilm and planktonic cells.	Liu D, Xu J, Wang Y, Chen Y, Shen X, Niu H, Guo T, Ying H.	J Biotechnol	10.1016/j.jbiotec.2015.11.017	2016
	Carbohydrate quality, fecal microbiota and cardiometabolic health in older adults: a cohort study.	Atzeni A, Nishi SK, Babio N, Belzer C, Konstanti P, Vioque J, Corella D, Castaner O, Vidal J, Moreno-Indias I, Torres-Collado L, Asensio EM, Fito M, Gomez-Perez AM, Arias A, Ruiz-Canela M, Hu FB, Tinahones FJ, Salas-Salvado J.	Gut Microbes	10.1080/19490976.2023.2246185	2023
Metabolism	Direct in situ butanol recovery inside the packed bed during continuous acetone-butanol-ethanol (ABE) fermentation.	Wang YR, Chiang YS, Chuang PJ, Chao YP, Li SY.	Appl Microbiol Biotechnol	10.1007/s00253-016-7443-6	2016
	Evaluation of Yeast Alcohol Acetyltransferases for Ethyl Acetate Production in Clostridium ljungdahlii.	Boto ST, Gerges K, Bardl B, Rosenbaum MA.	Eng Life Sci	10.1002/elsc.202400076	2025
Metabolism	Calorimetric studies of the growth of anaerobic microbes.	Miyake H, Maeda Y, Ishikawa T, Tanaka A.	J Biosci Bioeng	10.1016/j.jbiosc.2016.02.006	2016
Metabolism	Development of a Rhodobacter capsulatus self-reporting model system for optimizing light-dependent, [FeFe]-hydrogenase-driven H₂ production.	Wecker MS, Beaton SE, Chado RA, Ghirardi ML.	Biotechnol Bioeng	10.1002/bit.26076	2017
Metabolism	High-Level Butanol Production from Cassava Starch by a Newly Isolated Clostridium acetobutylicum.	Li S, Guo Y, Lu F, Huang J, Pang Z.	Appl Biochem Biotechnol	10.1007/s12010-015-1781-1	2015
Metabolism	The metabolic network of Clostridium acetobutylicum: Comparison of the approximate Bayesian computation via sequential Monte Carlo (ABC-SMC) and profile likelihood estimation (PLE) methods for determinability analysis.	Thorn GJ, King JR.	Math Biosci	10.1016/j.mbs.2015.10.016	2016
	One-Pot Biosynthesis of Acetone from Waste Poly(hydroxybutyrate).	Armijo-Galdames BO, Sadler JC.	ACS Sustain Chem Eng	10.1021/acssuschemeng.4c00357	2024
Metabolism	Metabolic modeling of clostridia: current developments and applications.	Dash S, Ng CY, Maranas CD.	FEMS Microbiol Lett	10.1093/femsle/fnw004	2016
Metabolism	Enhancing acetone biosynthesis and acetone-butanol-ethanol fermentation performance by co-culturing Clostridium acetobutylicum/Saccharomyces cerevisiae integrated with exogenous acetate addition.	Luo H, Ge L, Zhang J, Ding J, Chen R, Shi Z.	Bioresour Technol	10.1016/j.biortech.2015.09.116	2016
	Modular and signal-responsive transcriptional regulation using CRISPRi-aided genetic switches in Escherichia coli	Kim S, Woo S, Park J, Lee S, Lee D.	J Biol Eng		2025
	Microbial Upcycling of Waste PET to Adipic Acid.	Valenzuela-Ortega M, Suitor JT, White MFM, Hinchcliffe T, Wallace S.	ACS Cent Sci	10.1021/acscentsci.3c00414	2023
Metabolism	Acetone-butanol-ethanol production from Kraft paper mill sludge by simultaneous saccharification and fermentation.	Guan W, Shi S, Tu M, Lee YY.	Bioresour Technol	10.1016/j.biortech.2015.10.102	2016
Metabolism	Continuous xylose fermentation by Clostridium acetobutylicum--Assessment of solventogenic kinetics.	Procentese A, Raganati F, Olivieri G, Russo ME, Salatino P, Marzocchella A.	Bioresour Technol	10.1016/j.biortech.2015.05.041	2015
	Design of artificial small regulatory trans-RNA for gene knockdown in Bacillus subtilis.	Yin G, Peng A, Zhang L, Wang Y, Du G, Chen J, Kang Z.	Synth Syst Biotechnol	10.1016/j.synbio.2022.11.003	2023
Metabolism	Small acid-soluble spore proteins of Clostridium acetobutylicum are able to protect DNA in vitro and are specifically cleaved by germination protease GPR and spore protease YyaC.	Wetzel D, Fischer RJ.	Microbiology (Reading)	10.1099/mic.0.000162	2015
Metabolism	Combination of RNA sequencing and metabolite data to elucidate improved toxic compound tolerance and butanol fermentation of Clostridium acetobutylicum from wheat straw hydrolysate by supplying sodium sulfide.	Jin Y, Fang Y, Huang M, Sun J, Huang Y, Gao X, Li R, He K, Zhao H.	Bioresour Technol	10.1016/j.biortech.2015.08.139	2015
	Production of Esters in Escherichia coli Using Citrate Synthase Variants.	Shipmon JC, Rathinasabapathi P, Broich ML, Hemansi, Eiteman MA.	Microorganisms	10.3390/microorganisms12071338	2024
Metabolism	Solvents Production from a Mixture of Glucose and Xylose by Mixed Fermentation of Clostridium acetobutylicum and Saccharomyces cerevisiae.	Qi GX, Xiong L, Huang C, Chen XF, Lin XQ, Chen XD.	Appl Biochem Biotechnol	10.1007/s12010-015-1790-0	2015
	Management of microbial enzymes for biofuels and biogas production by using metagenomic and genome editing approaches.	Banu JR, Kumar G, Chattopadhyay I.	3 Biotech	10.1007/s13205-021-02962-x	2021
	High-throughput workflow for cultivation and characterization of gut microbiota strains with anti-inflammatory properties and metabolite signature associated with gut-brain communication.	Dokic J, Dinic M, Sokovic Bajic S, Bisenic A, Mitrovic H, Jakovljevic S, Radojevic D, Brdaric E, Lukic J, Zivkovic M, Tolinacki M, Terzic-Vidojevic A, Golic N.	Sci Rep	10.1038/s41598-025-93180-5	2025
Enzymology	Atomic Force Microscopy to Elicit Conformational Transitions of Ferredoxin-Dependent Flavin Thioredoxin Reductases.	Marcuello C, Frempong GA, Balsera M, Medina M, Lostao A.	Antioxidants (Basel)	10.3390/antiox10091437	2021
Pathogenicity	Gut virome and its implications in the pathogenesis and therapeutics of inflammatory bowel disease.	Wu Y, Cheng R, Lin H, Li L, Jia Y, Philips A, Zuo T, Zhang H.	BMC Med	10.1186/s12916-025-04016-y	2025
Metabolism	Efficient acetone-butanol-ethanol production (ABE) by Clostridium acetobutylicum XY16 immobilized on chemically modified sugarcane bagasse.	Kong X, He A, Zhao J, Wu H, Jiang M.	Bioprocess Biosyst Eng	10.1007/s00449-015-1377-8	2015
Transcriptome	Comparative transcriptome analysis between csrA-disruption Clostridium acetobutylicum and its parent strain.	Tan Y, Liu ZY, Liu Z, Zheng HJ, Li FL.	Mol Biosyst	10.1039/c4mb00600c	2015
Metabolism	Metabolic engineering of isopropyl alcohol-producing Escherichia coli strains with ¹³ C-metabolic flux analysis.	Okahashi N, Matsuda F, Yoshikawa K, Shirai T, Matsumoto Y, Wada M, Shimizu H.	Biotechnol Bioeng	10.1002/bit.26390	2017
Metabolism	An unexpected negative influence of light intensity on hydrogen production by dark fermentative bacteria Clostridium beijerinckii.	Zagrodnik R, Laniecki M.	Bioresour Technol	10.1016/j.biortech.2015.10.049	2016
	Assessment of morphological changes of Clostridium acetobutylicum by flow cytometry during acetone/butanol/ethanol extractive fermentation	Gonzalez-Penas H, Lu-Chau TA, Moreira MT, Lema JM.	Biotechnol Lett		2015
	Thermophilic site-specific recombination system for rapid insertion of heterologous DNA into the Clostridium thermocellum chromosome.	Ashok N, Kaygusuz Y, Schindel HS, Thurmon S, Eckert CA, Guss AM.	J Ind Microbiol Biotechnol	10.1093/jimb/kuaf023	2024
Metabolism	Continuous lactose fermentation by Clostridium acetobutylicum--assessment of solventogenic kinetics.	Procentese A, Raganati F, Olivieri G, Russo ME, Salatino P, Marzocchella A.	Bioresour Technol	10.1016/j.biortech.2015.01.008	2015
	Co-fermentation of alfalfa juice and hardwood hydrolysate for butanol production in combined biorefinery systems	Mechmech F, Marinova M, Chadjaa H, Rahni M, Ben Akacha N, Gargouri M.	Industrial crops and products.	10.1016/j.indcrop.2016.04.057	2016
Metabolism	Elimination of carbon catabolite repression in Clostridium acetobutylicum--a journey toward simultaneous use of xylose and glucose.	Bruder M, Moo-Young M, Chung DA, Chou CP.	Appl Microbiol Biotechnol	10.1007/s00253-015-6611-4	2015
Enzymology	H-cluster Intermediates and Catalytic Properties of Clostridium pasteurianum [FeFe]-Hydrogenase III.	Kisgeropoulos EC, Ratzloff MW, Stroeva-Dahl EM, Hasan S, Varghese F, Artz JH, Peters JW, Mulder DW, King PW.	Biochemistry	10.1021/acs.biochem.5c00066	2025
Metabolism	Production of an acetone-butanol-ethanol mixture from Clostridium acetobutylicum and its conversion to high-value biofuels.	Sreekumar S, Baer ZC, Pazhamalai A, Gunbas G, Grippo A, Blanch HW, Clark DS, Toste FD.	Nat Protoc	10.1038/nprot.2015.029	2015
Metabolism	Impact of the chemicals, essential for the purification process of strict Fe-hydrogenase, on the corrosion of mild steel.	Rouvre I, Gauquelin C, Meynial-Salles I, Basseguy R.	Bioelectrochemistry	10.1016/j.bioelechem.2015.12.006	2016
Metabolism	Assessment of morphological changes of Clostridium acetobutylicum by flow cytometry during acetone/butanol/ethanol extractive fermentation.	Gonzalez-Penas H, Lu-Chau TA, Moreira MT, Lema JM.	Biotechnol Lett	10.1007/s10529-014-1702-3	2015
Metabolism	The role of pH control on biohydrogen production by single stage hybrid dark- and photo-fermentation.	Zagrodnik R, Laniecki M.	Bioresour Technol	10.1016/j.biortech.2015.07.028	2015
	Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress.	Kumar M, Saini S, Gayen K.	Mol Biosyst	10.1039/c4mb00126e	2014
Metabolism	Cellodextrin Metabolism and Phosphotransferase System-Catalyzed Uptake in Enterococcus faecalis.	Combret V, Rince I, Cochelin R, Desriac F, Muller C, Soussan D, Hartke A, Deutscher J, Sauvageot N.	Mol Microbiol	10.1111/mmi.15346	2025
	Engineering a Phosphoketolase Pathway to Supplement Cytosolic Acetyl-CoA in Aspergillus niger Enables a Significant Increase in Citric Acid Production.	Liu J, Zhang S, Li W, Wang G, Xie Z, Cao W, Gao W, Liu H.	J Fungi (Basel)	10.3390/jof9050504	2023
Metabolism	Metabolic engineering of Clostridium tyrobutyricum for n-butanol production from sugarcane juice.	Zhang J, Yu L, Xu M, Yang ST, Yan Q, Lin M, Tang IC.	Appl Microbiol Biotechnol	10.1007/s00253-017-8200-1	2017
Metabolism	Engineering Clostridium acetobutylicum with a histidine kinase knockout for enhanced n-butanol tolerance and production.	Xu M, Zhao J, Yu L, Tang IC, Xue C, Yang ST.	Appl Microbiol Biotechnol	10.1007/s00253-014-6249-7	2015
Metabolism	Novel clostridial fusants in comparison with co-cultured counterpart species for enhanced production of biobutanol using green renewable and sustainable feedstock.	Syed K, Dahman Y.	Bioprocess Biosyst Eng	10.1007/s00449-015-1462-z	2015
Enzymology	The Phosphotransferase System in Solventogenic Clostridia.	Mitchell WJ.	J Mol Microbiol Biotechnol	10.1159/000375125	2015
	A thermophilic 8-oxoguanine DNA glycosylase from Thermococcus barophilus Ch5 is a new member of AGOG DNA glycosylase family	Wang L, Jiang D, Zhang L.	Acta Biochim Biophys Sin (Shanghai)	10.3724/abbs.2022072	2022
Metabolism	Biosynthesis of the fatty acid isopropyl esters by engineered Escherichia coli.	Pan H, Zhang L, Li X, Guo D.	Enzyme Microb Technol	10.1016/j.enzmictec.2017.03.012	2017
Metabolism	Chemostat cultivation and transcriptional analyses of Clostridium acetobutylicum mutants with defects in the acid and acetone biosynthetic pathways.	Honicke D, Lutke-Eversloh T, Liu Z, Lehmann D, Liebl W, Ehrenreich A.	Appl Microbiol Biotechnol	10.1007/s00253-014-6040-9	2014
Metabolism	Application of new metabolic engineering tools for Clostridium acetobutylicum.	Lutke-Eversloh T.	Appl Microbiol Biotechnol	10.1007/s00253-014-5785-5	2014
Metabolism	Exploring the inhibitory characteristics of acid hydrolysates upon butanol fermentation: A toxicological assessment.	Wang Y, Guo W, Chen BY, Cheng CL, Lo YC, Ho SH, Chang JS, Ren N.	Bioresour Technol	10.1016/j.biortech.2015.09.075	2015
Metabolism	Metabolic engineering of Methanosarcina acetivorans for lactate production from methane.	McAnulty MJ, Poosarla VG, Li J, Soo VW, Zhu F, Wood TK.	Biotechnol Bioeng	10.1002/bit.26208	2017
	Characterization and Description of the Fecal Microbiomes of Pet Domestic Ferrets (Mustela putorius furo) Living in Homes.	Scarsella E, Fay JS, Jospin G, Jarett JK, Entrolezo Z, Ganz HH.	Animals (Basel)	10.3390/ani13213354	2023
Metabolism	Improving the performance of solventogenic clostridia by reinforcing the biotin synthetic pathway.	Yang Y, Lang N, Yang G, Yang S, Jiang W, Gu Y.	Metab Eng	10.1016/j.ymben.2016.02.006	2016
	Whole genome sequencing reveals a novel CRISPR system in industrial Clostridium acetobutylicum.	Peng L, Pei J, Pang H, Guo Y, Lin L, Huang R.	J Ind Microbiol Biotechnol	10.1007/s10295-014-1507-3	2014
Metabolism	Improvement of acetone, butanol, and ethanol production from woody biomass using organosolv pretreatment.	Amiri H, Karimi K.	Bioprocess Biosyst Eng	10.1007/s00449-015-1437-0	2015
Metabolism	Butanol production by immobilised Clostridium acetobutylicum in repeated batch, fed-batch, and continuous modes of fermentation.	Dolejs I, Krasnan V, Stloukal R, Rosenberg M, Rebros M.	Bioresour Technol	10.1016/j.biortech.2014.07.039	2014
	Effects of H2 and electrochemical reducing power on metabolite production by Clostridium acetobutylicum KCTC1037.	Jeon B, Yi J, Park D.	Biosci Biotechnol Biochem	10.1080/09168451.2014.882743	2014
	Metabolite labelling as a tool to define hierarchies in Clostridium acetobutylicum sugar usage and its relevance for biofuel production.	Hidalgo M, Puerta-Fernandez E.	Microb Biotechnol	10.1111/1751-7915.12696	2017
Metabolism	Co-production of acetone and ethanol with molar ratio control enables production of improved gasoline or jet fuel blends.	Baer ZC, Bormann S, Sreekumar S, Grippo A, Toste FD, Blanch HW, Clark DS.	Biotechnol Bioeng	10.1002/bit.25978	2016
Metabolism	Coenzyme A-transferase-independent butyrate re-assimilation in Clostridium acetobutylicum-evidence from a mathematical model.	Millat T, Voigt C, Janssen H, Cooksley CM, Winzer K, Minton NP, Bahl H, Fischer RJ, Wolkenhauer O.	Appl Microbiol Biotechnol	10.1007/s00253-014-5987-x	2014
Metabolism	Structural insights into substrate specificity of crotonase from the n-butanol producing bacterium Clostridium acetobutylicum.	Kim EJ, Kim YJ, Kim KJ.	Biochem Biophys Res Commun	10.1016/j.bbrc.2014.07.139	2014
Metabolism	Biological butanol production from microalgae-based biodiesel residues by Clostridium acetobutylicum.	Cheng HH, Whang LM, Chan KC, Chung MC, Wu SH, Liu CP, Tien SY, Chen SY, Chang JS, Lee WJ.	Bioresour Technol	10.1016/j.biortech.2014.11.017	2015
Metabolism	Simultaneous production of butanol and acetoin by metabolically engineered Clostridium acetobutylicum.	Liu D, Chen Y, Ding F, Guo T, Xie J, Zhuang W, Niu H, Shi X, Zhu C, Ying H.	Metab Eng	10.1016/j.ymben.2014.11.002	2015
Pathogenicity	Supplementation with Lactobacillus helveticus NS8 alleviated behavioral, neural, endocrine, and microbiota abnormalities in an endogenous rat model of depression.	Alatan H, Liang S, Shimodaira Y, Wu X, Hu X, Wang T, Luo J, Iijima K, Jin F.	Front Immunol	10.3389/fimmu.2024.1407620	2024
Metabolism	Atmospheric vs. anaerobic processing of metabolome samples for the metabolite profiling of a strict anaerobic bacterium, Clostridium acetobutylicum.	Lee SH, Kim S, Kwon MA, Jung YH, Shin YA, Kim KH.	Biotechnol Bioeng	10.1002/bit.25314	2014
	Optimizing Hexose Utilization Pathways of Cupriavidus necator for Improving Growth and L-Alanine Production under Heterotrophic and Autotrophic Conditions.	Wang L, Luo H, Yao B, Yao J, Zhang J.	Int J Mol Sci	10.3390/ijms25010548	2023
	Finding enzyme cofactors in Protein Data Bank.	Mukhopadhyay A, Borkakoti N, Pravda L, Tyzack JD, Thornton JM, Velankar S.	Bioinformatics	10.1093/bioinformatics/btz115	2019
	Fully biological production of adipic acid analogs from branched catechols.	Kruyer NS, Wauldron N, Bommarius AS, Peralta-Yahya P.	Sci Rep	10.1038/s41598-020-70158-z	2020
Metabolism	Biobutanol production by Clostridium acetobutylicum using xylose recovered from birch Kraft black liquor.	Kudahettige-Nilsson RL, Helmerius J, Nilsson RT, Sjoblom M, Hodge DB, Rova U.	Bioresour Technol	10.1016/j.biortech.2014.11.012	2015
	Functional analysis of feedback inhibition-insensitive aspartate kinase identified in a threonine-accumulating mutant of Saccharomyces cerevisiae.	Isogai S, Nishimura A, Inoue A, Sonohara S, Tsugukuni T, Okada T, Takagi H.	Appl Environ Microbiol	10.1128/aem.00155-24	2024
Genetics	Decoding the roles of extremophilic microbes in the anaerobic environments: Past, Present, and Future.	Patidar P, Prakash T.	Curr Res Microb Sci	10.1016/j.crmicr.2022.100146	2022
Metabolism	Molecular modulation of pleiotropic regulator CcpA for glucose and xylose coutilization by solvent-producing Clostridium acetobutylicum.	Wu Y, Yang Y, Ren C, Yang C, Yang S, Gu Y, Jiang W.	Metab Eng	10.1016/j.ymben.2015.01.006	2015
Metabolism	Isolation and characterisation of non-anaerobic butanol-producing symbiotic system TSH06.	Wang G, Wu P, Liu Y, Mi S, Mai S, Gu C, Wang G, Liu H, Zhang J, Borresen BT, Mellemsaether E, Kotlar HK.	Appl Microbiol Biotechnol	10.1007/s00253-015-6864-y	2015
Metabolism	Effect of ozonolysis parameters on the inhibitory compound generation and on the production of ethanol by Pichia stipitis and acetone-butanol-ethanol by Clostridium from ozonated and water washed sugarcane bagasse.	Travaini R, Barrado E, Bolado-Rodriguez S.	Bioresour Technol	10.1016/j.biortech.2016.07.028	2016
Metabolism	Phosphoketolase flux in Clostridium acetobutylicum during growth on L-arabinose.	Sund CJ, Liu S, Germane KL, Servinsky MD, Gerlach ES, Hurley MM.	Microbiology (Reading)	10.1099/mic.0.000008	2015
Metabolism	Enhanced butanol production by eukaryotic Saccharomyces cerevisiae engineered to contain an improved pathway.	Sakuragi H, Morisaka H, Kuroda K, Ueda M.	Biosci Biotechnol Biochem	10.1080/09168451.2014.972330	2015
	Mathematical modeling of biohydrogen production via dark fermentation of fruit peel wastes by Clostridium butyricum NE95.	Elerakey N, Rasmey AM, Aboseidah AA, Hawary H.	BMC Biotechnol	10.1186/s12896-024-00925-7	2024
Metabolism	[Effects of chemically modified sugarcane bagasse on butanol production by immobilized Clostridium acetobutylicum XY16].	Kong X, He A, Chen J, Chen W, Yin C, Chen P, Wu H, Jiang M.	Sheng Wu Gong Cheng Xue Bao		2014
	Stable high-titer n-butanol production from sucrose and sugarcane juice by Clostridium acetobutylicum JB200 in repeated batch fermentations.	Jiang W, Zhao J, Wang Z, Yang ST.	Bioresour Technol	10.1016/j.biortech.2014.04.047	2014
Metabolism	Direct fermentation of gelatinized cassava starch to acetone, butanol, and ethanol using Clostridium acetobutylicum mutant obtained by atmospheric and room temperature plasma.	Li HG, Luo W, Wang Q, Yu XB.	Appl Biochem Biotechnol	10.1007/s12010-014-0765-x	2014
	Programmable cell aggregation by a synthetic biosilicification approach.	Wang Q, Sun J, Zang L, Yao H, Wang L, Zhu R, Li J, Zeng S, Tang H, Wang T, Liu J, Wang B, Li B, Liu Z, Dai Z.	iScience	10.1016/j.isci.2025.112519	2025
	Nutritional stress induces exchange of cell material and energetic coupling between bacterial species.	Benomar S, Ranava D, Cardenas ML, Trably E, Rafrafi Y, Ducret A, Hamelin J, Lojou E, Steyer JP, Giudici-Orticoni MT.	Nat Commun	10.1038/ncomms7283	2015
	Fangyukangsuan granules ameliorate hyperuricemia and modulate gut microbiota in rats.	Zhang QZ, Zhang JR, Li X, Yin JL, Jin LM, Xun ZR, Xue H, Yang WQ, Zhang H, Qu J, Xing ZK, Wang XM.	Front Immunol	10.3389/fimmu.2024.1362642	2024
Metabolism	Green synthesized iron oxide nanoparticles effect on fermentative hydrogen production by Clostridium acetobutylicum.	Mohanraj S, Kodhaiyolii S, Rengasamy M, Pugalenthi V.	Appl Biochem Biotechnol	10.1007/s12010-014-0843-0	2014
Enzymology	The effect of a C298D mutation in CaHydA [FeFe]-hydrogenase: Insights into the protein-metal cluster interaction by EPR and FTIR spectroscopic investigation.	Morra S, Maurelli S, Chiesa M, Mulder DW, Ratzloff MW, Giamello E, King PW, Gilardi G, Valetti F.	Biochim Biophys Acta	10.1016/j.bbabio.2015.10.005	2016
Metabolism	Modeling Growth Kinetics, Interspecies Cell Fusion, and Metabolism of a Clostridium acetobutylicum/Clostridium ljungdahlii Syntrophic Coculture.	Foster C, Charubin K, Papoutsakis ET, Maranas CD.	mSystems	10.1128/msystems.01325-20	2021
	Clostridium acetobutylicum Biofilm: Advances in Understanding the Basis.	Zhang H, Yang P, Wang Z, Li M, Zhang J, Liu D, Chen Y, Ying H.	Front Bioeng Biotechnol	10.3389/fbioe.2021.658568	2021
	Application of exogenous electron mediator in fermentation to enhance the production of value-added products.	Yu Y, Shi Z, Li W, Bian M, Cheng C, Xi Y, Yao S, Zeng X, Jia Y.	Appl Environ Microbiol	10.1128/aem.00495-25	2025
Metabolism	Metabolic engineering of Clostridium acetobutylicum for butyric acid production with high butyric acid selectivity.	Jang YS, Im JA, Choi SY, Lee JI, Lee SY.	Metab Eng	10.1016/j.ymben.2014.03.004	2014
	To analyze the relationship between gut microbiota, metabolites and migraine: a two-sample Mendelian randomization study.	Qu K, Li MX, Gan L, Cui ZT, Li JJ, Yang R, Dong M.	Front Microbiol	10.3389/fmicb.2024.1325047	2024
	Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.	Purzycka KJ, Popenda M, Szachniuk M, Antczak M, Lukasiak P, Blazewicz J, Adamiak RW.	Methods Enzymol	10.1016/bs.mie.2014.10.050	2015
Metabolism	Acetone, butanol, and ethanol production from gelatinized cassava flour by a new isolates with high butanol tolerance.	Li HG, Ofosu FK, Li KT, Gu QY, Wang Q, Yu XB.	Bioresour Technol	10.1016/j.biortech.2014.09.058	2014
Genetics	Multiomics of yaks reveals significant contribution of microbiome into host metabolism.	Yang S, Zheng J, Mao H, Vinitchaikul P, Wu D, Chai J.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00609-2	2024
Transcriptome	Comparative Transcriptome Analysis of Shewanella putrefaciens WS13 Biofilms Under Cold Stress.	Yan J, Yang Z, Xie J.	Front Cell Infect Microbiol	10.3389/fcimb.2022.851521	2022
Metabolism	Improvement of solvent production from xylose mother liquor by engineering the xylose metabolic pathway in Clostridium acetobutylicum EA 2018.	Li Z, Xiao H, Jiang W, Jiang Y, Yang S.	Appl Biochem Biotechnol	10.1007/s12010-013-0414-9	2013
	Lysine Phoshoglycerylation Is Widespread in Bacteria and Overlaps with Acylation.	Mikkat S, Kreutzer M, Patenge N.	Microorganisms	10.3390/microorganisms12081556	2024
Metabolism	Dual substrate strategy to enhance butanol production using high cell inoculum and its efficient recovery by pervaporation.	Yadav S, Rawat G, Tripathi P, Saxena RK.	Bioresour Technol	10.1016/j.biortech.2013.11.022	2014
Genetics	Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children.	Han L, Liu X, Lan Y, Hua Y, Fan Z, Li Y.	Front Immunol	10.3389/fimmu.2024.1416185	2024
Genetics	Constraint-based genome-scale metabolic modeling of Clostridium acetobutylicum behavior in an immobilized column.	Wallenius J, Viikila M, Survase S, Ojamo H, Eerikainen T.	Bioresour Technol	10.1016/j.biortech.2013.05.085	2013
Metabolism	Engineering cellular robustness of microbes by introducing the GroESL chaperonins from extremophilic bacteria.	Luan G, Dong H, Zhang T, Lin Z, Zhang Y, Li Y, Cai Z.	J Biotechnol	10.1016/j.jbiotec.2014.03.010	2014
	Alginate Adsorbent Immobilization Technique Promotes Biobutanol Production by Clostridium acetobutylicum Under Extreme Condition of High Concentration of Organic Solvent.	Ye Z, Song J, Zhu E, Song X, Chen X, Hong X.	Front Microbiol	10.3389/fmicb.2018.01071	2018
	Metabolic engineering of Clostridium autoethanogenum for ethyl acetate production from CO.	Dykstra JC, van Oort J, Yazdi AT, Vossen E, Patinios C, van der Oost J, Sousa DZ, Kengen SWM.	Microb Cell Fact	10.1186/s12934-022-01964-5	2022
Genetics	Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations.	Scott WT, Rockx S, Marien Q, Regueira A, Candry P, Ganigue R, Koehorst JJ, Schaap PJ.	Comput Struct Biotechnol J	10.1016/j.csbj.2025.01.013	2025
Enzymology	Solvent screening methodology for in situ ABE extractive fermentation.	Gonzalez-Penas H, Lu-Chau TA, Moreira MT, Lema JM.	Appl Microbiol Biotechnol	10.1007/s00253-014-5634-6	2014
Pathogenicity	Hacking the Immune Response to Solid Tumors: Harnessing the Anti-Cancer Capacities of Oncolytic Bacteria.	Roe JM, Seely K, Bussard CJ, Eischen Martin E, Mouw EG, Bayles KW, Hollingsworth MA, Brooks AE, Dailey KM.	Pharmaceutics	10.3390/pharmaceutics15072004	2023
Metabolism	Acetone production with metabolically engineered strains of Acetobacterium woodii.	Hoffmeister S, Gerdom M, Bengelsdorf FR, Linder S, Fluchter S, Ozturk H, Blumke W, May A, Fischer RJ, Bahl H, Durre P.	Metab Eng	10.1016/j.ymben.2016.03.001	2016
	Gut microbiota composition and type 2 diabetes: Are these subjects linked Together?	Razavi S, Amirmozafari N, Zahedi Bialvaei A, Navab-Moghadam F, Khamseh ME, Alaei-Shahmiri F, Sedighi M.	Heliyon	10.1016/j.heliyon.2024.e39464	2024
	A functional recT gene for recombineering of Clostridium.	Dong H, Tao W, Gong F, Li Y, Zhang Y.	J Biotechnol	10.1016/j.jbiotec.2013.12.011	2014
Metabolism	Impact of sweet sorghum cuticular waxes (SSCW) on acetone-butanol-ethanol fermentation using Clostridium acetobutylicum ABE1201.	Cai D, Chang Z, Wang C, Ren W, Wang Z, Qin P, Tan T.	Bioresour Technol	10.1016/j.biortech.2013.09.122	2013
Metabolism	Role of extracellular cues to trigger the metabolic phase shifting from acidogenesis to solventogenesis in Clostridium acetobutylicum.	Kumar M, Gayen K, Saini S.	Bioresour Technol	10.1016/j.biortech.2013.03.159	2013
Metabolism	Efficient production of acetone-butanol-ethanol (ABE) from cassava by a fermentation-pervaporation coupled process.	Li J, Chen X, Qi B, Luo J, Zhang Y, Su Y, Wan Y.	Bioresour Technol	10.1016/j.biortech.2014.06.102	2014
Metabolism	Organosolv pretreatment of rice straw for efficient acetone, butanol, and ethanol production.	Amiri H, Karimi K, Zilouei H.	Bioresour Technol	10.1016/j.biortech.2013.11.038	2014
Metabolism	Engineering Clostridium acetobutylicum for alcohol production.	Hou X, Peng W, Xiong L, Huang C, Chen X, Chen X, Zhang W.	J Biotechnol	10.1016/j.jbiotec.2013.04.013	2013
	Fecal microbiota and antibiotic resistance in ferrets (Mustela putorius furo) from two captive breeding facilities in Italy.	Nizza S, Rando F, Fiorito F, Pagnini U, Iovane G, De Martino L.	Res Vet Sci	10.1016/j.rvsc.2014.03.015	2014
Metabolism	Metabolic engineering of Clostridium acetobutylicum for enhanced production of butyric acid.	Jang YS, Woo HM, Im JA, Kim IH, Lee SY.	Appl Microbiol Biotechnol	10.1007/s00253-013-5161-x	2013
	Heterologous 1,3-Propanediol Production Using Different Recombinant Clostridium beijerinckii DSM 6423 Strains.	Schoch T, Baur T, Kunz J, Stoferle S, Durre P.	Microorganisms	10.3390/microorganisms11030784	2023
Metabolism	Effect of zinc supplementation on acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.	Wu YD, Xue C, Chen LJ, Bai FW.	J Biotechnol	10.1016/j.jbiotec.2013.02.009	2013
Metabolism	Metabolic engineering of Clostridium acetobutylicum for the enhanced production of isopropanol-butanol-ethanol fuel mixture.	Jang YS, Malaviya A, Lee J, Im JA, Lee SY, Lee J, Eom MH, Cho JH, Seung do Y.	Biotechnol Prog	10.1002/btpr.1733	2013
	A Hammett Study of Clostridium acetobutylicum Alcohol Dehydrogenase (CaADH): An Enzyme with Remarkable Substrate Promiscuity and Utility for Organic Synthesis.	Kudalkar GP, Tiwari VK, Lee JD, Berkowitz DB.	Synlett	10.1055/s-0039-1691576	2020
	Preparation and Immobilization Mechanism on a Novel Composite Carrier PDA-CF/PUF to Improve Cells Immobilization and Xylitol Production	Wang L, Liu J, Shen Y, Yin Y, Ni Z, Xi J, Hu Y, Yuan Q.	Foods		2024
Metabolism	Conversion of levulinic acid to 2-butanone by acetoacetate decarboxylase from Clostridium acetobutylicum.	Min K, Kim S, Yum T, Kim Y, Sang BI, Um Y.	Appl Microbiol Biotechnol	10.1007/s00253-013-4879-9	2013
Metabolism	Combined overexpression of genes involved in pentose phosphate pathway enables enhanced D-xylose utilization by Clostridium acetobutylicum.	Jin L, Zhang H, Chen L, Yang C, Yang S, Jiang W, Gu Y.	J Biotechnol	10.1016/j.jbiotec.2014.01.002	2014
Metabolism	Enhancement of butanol tolerance and butanol yield in Clostridium acetobutylicum mutant NT642 obtained by nitrogen ion beam implantation.	Liu XB, Gu QY, Yu XB, Luo W.	J Microbiol	10.1007/s12275-012-2289-9	2012
Metabolism	Butanol fermentation.	Schiel-Bengelsdorf B, Montoya J, Linder S, Durre P.	Environ Technol	10.1080/09593330.2013.827746	2013
Metabolism	Metabolic engineering of Escherichia coli for de novo production of 3-phenylpropanol via retrobiosynthesis approach.	Liu Z, Zhang X, Lei D, Qiao B, Zhao GR.	Microb Cell Fact	10.1186/s12934-021-01615-1	2021
Metabolism	Acetone-butanol-ethanol production with high productivity using Clostridium acetobutylicum BKM19.	Jang YS, Malaviya A, Lee SY.	Biotechnol Bioeng	10.1002/bit.24843	2013
	Evaluation of fluorimetric pH sensors for bioprocess monitoring at low pH.	Janzen NH, Schmidt M, Krause C, Weuster-Botz D.	Bioprocess Biosyst Eng	10.1007/s00449-015-1409-4	2015
Metabolism	Nonelectroactive clostridium obtains extracellular electron transfer-capability after forming chimera with Geobacter.	Liu X, Ye Y, Yang N, Cheng C, Rensing C, Jin C, Nealson KH, Zhou S.	ISME Commun	10.1093/ismeco/ycae058	2024
Pathogenicity	Repetitive domestication to enhance butanol tolerance and production in Clostridium acetobutylicum through artificial simulation of bio-evolution.	Liu XB, Gu QY, Yu XB.	Bioresour Technol	10.1016/j.biortech.2012.12.121	2013
	A conserved nuclease facilitates environmental DNA uptake.	Hanssmann J, Pane-Farre J, Meiser M, Girbig M, Fu L, Madej MG, Sendker FL, Tholken C, Lechner M, Ziegler C, Hochberg GKA, Bange G, Thanbichler M, Hinrichs R.	Nucleic Acids Res	10.1093/nar/gkaf443	2025
	Butyrate production in the acetogen Eubacterium limosum is dependent on the carbon and energy source.	Litty D, Muller V.	Microb Biotechnol	10.1111/1751-7915.13779	2021
	tsRBase: a comprehensive database for expression and function of tsRNAs in multiple species.	Zuo Y, Zhu L, Guo Z, Liu W, Zhang J, Zeng Z, Wu Q, Cheng J, Fu X, Jin Y, Zhao Y, Peng Y.	Nucleic Acids Res	10.1093/nar/gkaa888	2021
	Multiple Cofactor Engineering Strategies to Enhance Pyridoxine Production in Escherichia coli.	Wu L, Li J, Zhang Y, Tian Z, Jin Z, Liu L, Zhang D.	Microorganisms	10.3390/microorganisms12050933	2024
	Measurement of biochemical oxygen demand from different wastewater samples using a mediator-less microbial fuel cell biosensor.	Hsieh MC, Chung YC.	Environ Technol	10.1080/09593330.2014.898700	2014
	Development of a group II intron-based genetic manipulation tool for Streptomyces.	Sang Z, Li X, Yan H, Wang W, Wen Y.	Microb Biotechnol	10.1111/1751-7915.14472	2024
	The putative influence of the agr operon upon survival mechanisms used by Clostridium acetobutylicum.	Jabbari S, Steiner E, Heap JT, Winzer K, Minton NP, King JR.	Math Biosci	10.1016/j.mbs.2013.03.005	2013
Metabolism	Recent advancements in various steps of ethanol, butanol, and isobutanol productions from woody materials.	Fatehi P.	Biotechnol Prog	10.1002/btpr.1688	2013
	Multiplex genetic manipulations in Clostridium butyricum and Clostridium sporogenes to secrete recombinant antigen proteins for oral-spore vaccination.	Zhang Y, Bailey TS, Hittmeyer P, Dubois LJ, Theys J, Lambin P.	Microb Cell Fact	10.1186/s12934-024-02389-y	2024
	Clostridium acetobutylicum grows vegetatively in a biofilm rich in heteropolysaccharides and cytoplasmic proteins.	Liu D, Yang Z, Chen Y, Zhuang W, Niu H, Wu J, Ying H.	Biotechnol Biofuels	10.1186/s13068-018-1316-4	2018
Metabolism	Electrochemical Measurements of the Kinetics of Inhibition of Two FeFe Hydrogenases by O2 Demonstrate That the Reaction Is Partly Reversible.	Orain C, Saujet L, Gauquelin C, Soucaille P, Meynial-Salles I, Baffert C, Fourmond V, Bottin H, Leger C.	J Am Chem Soc	10.1021/jacs.5b06934	2015
Enzymology	Structures of trans-2-enoyl-CoA reductases from Clostridium acetobutylicum and Treponema denticola: insights into the substrate specificity and the catalytic mechanism.	Hu K, Zhao M, Zhang T, Zha M, Zhong C, Jiang Y, Ding J.	Biochem J	10.1042/bj20120871	2013
	Over-expression of stress protein-encoding genes helps Clostridium acetobutylicum to rapidly adapt to butanol stress	Mann MS, Dragovic Z, Schirrmacher G, Lutke-Eversloh T.	Biotechnol Lett		2012
	Diameter dependent electron transfer kinetics in semiconductor-enzyme complexes.	Brown KA, Song Q, Mulder DW, King PW.	ACS Nano	10.1021/nn504561v	2014
	Control of Clostridioides difficile virulence and physiology by the flagellin homeostasis checkpoint FliC-FliW-CsrA in the absence of motility.	Zhu D, Wozniak KJ, Midani F, Wang S, Sun X, Britton RA.	mBio	10.1128/mbio.03801-24	2025
	Butyrate production in engineered Escherichia coli with synthetic scaffolds.	Baek JM, Mazumdar S, Lee SW, Jung MY, Lim JH, Seo SW, Jung GY, Oh MK.	Biotechnol Bioeng	10.1002/bit.24925	2013
Metabolism	Immobilization of Clostridium acetobutylicum onto natural textiles and its fermentation properties.	Zhuang W, Liu X, Yang J, Wu J, Zhou J, Chen Y, Liu D, Ying H.	Microb Biotechnol	10.1111/1751-7915.12557	2017
	Engineering nonphotosynthetic carbon fixation for production of bioplastics by methanogenic archaea.	Thevasundaram K, Gallagher JJ, Cherng F, Chang MCY.	Proc Natl Acad Sci U S A	10.1073/pnas.2118638119	2022
Metabolism	Incorporation of Nasutitermes takasagoensis endoglucanase into cell surface-displayed minicellulosomes in Pichia pastoris X33.	Ou J, Cao Y.	J Microbiol Biotechnol	10.4014/jmb.1402.02034	2014
Metabolism	Enhancement of butanol production and reducing power using a two-stage controlled-pH strategy in batch culture of Clostridium acetobutylicum XY16.	Guo T, Sun B, Jiang M, Wu H, Du T, Tang Y, Wei P, Ouyang P.	World J Microbiol Biotechnol	10.1007/s11274-012-1063-9	2012
Metabolism	Light-driven biocatalysis with cytochrome P450 peroxygenases.	Girhard M, Kunigk E, Tihovsky S, Shumyantseva VV, Urlacher VB.	Biotechnol Appl Biochem	10.1002/bab.1063	2013
Pathogenicity	Over-expression of stress protein-encoding genes helps Clostridium acetobutylicum to rapidly adapt to butanol stress.	Mann MS, Dragovic Z, Schirrmacher G, Lutke-Eversloh T.	Biotechnol Lett	10.1007/s10529-012-0951-2	2012
Enzymology	Engineering cellulase activity into Clostridium acetobutylicum.	Fierobe HP, Mingardon F, Chanal A.	Methods Enzymol	10.1016/b978-0-12-415931-0.00016-1	2012
Metabolism	Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation.	Lee WH, Kim MD, Jin YS, Seo JH.	Appl Microbiol Biotechnol	10.1007/s00253-013-4750-z	2013
	The Effect of Technological Conditions on ABE Fermentation and Butanol Production of Rye Straw and the Composition of Volatile Compounds.	Dziemianowicz W, Kotarska K, Swierczynska A.	Molecules	10.3390/molecules29143398	2024
	A small-scale investigation process for the Clostridium acetobutylicum production of butanol using high-energy carbon heavy ion irradiation.	Jiang TT, Zhou X, Liang Y.	Eng Life Sci	10.1002/elsc.201800090	2018
Metabolism	High-titer n-butanol production by clostridium acetobutylicum JB200 in fed-batch fermentation with intermittent gas stripping.	Xue C, Zhao J, Lu C, Yang ST, Bai F, Tang IC.	Biotechnol Bioeng	10.1002/bit.24563	2012
	Exploitation of a Type 1 Toxin-Antitoxin System as an Inducible Counter-Selective Marker for Genome Editing in the Acetogen Eubacterium limosum.	Millard J, Agius A, Zhang Y, Soucaille P, Minton NP.	Microorganisms	10.3390/microorganisms11051256	2023
Metabolism	Acetone-butanol-ethanol (ABE) fermentation using Clostridium acetobutylicum XY16 and in situ recovery by PDMS/ceramic composite membrane.	Wu H, Chen XP, Liu GP, Jiang M, Guo T, Jin WQ, Wei P, Zhu DW.	Bioprocess Biosyst Eng	10.1007/s00449-012-0721-5	2012
Metabolism	The enhancement of butanol production by in situ butanol removal using biodiesel extraction in the fermentation of ABE (acetone-butanol-ethanol).	Yen HW, Wang YC.	Bioresour Technol	10.1016/j.biortech.2012.11.039	2013
Metabolism	Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm.	Senger RS, Nazem-Bokaee H.	Methods Mol Biol	10.1007/978-1-62703-299-5_5	2013
	An efficient method for markerless mutant generation by allelic exchange in Clostridium acetobutylicum and Clostridium saccharobutylicum using suicide vectors.	Foulquier C, Huang CN, Nguyen NP, Thiel A, Wilding-Steel T, Soula J, Yoo M, Ehrenreich A, Meynial-Salles I, Liebl W, Soucaille P.	Biotechnol Biofuels	10.1186/s13068-019-1364-4	2019
Metabolism	New insights into the butyric acid metabolism of Clostridium acetobutylicum.	Lehmann D, Radomski N, Lutke-Eversloh T.	Appl Microbiol Biotechnol	10.1007/s00253-012-4109-x	2012
	In vivo implementation of a synthetic metabolic pathway for the carbon-conserving conversion of glycolaldehyde to acetyl-CoA.	Wagner N, Bade F, Straube E, Rabe K, Frazao CJR, Walther T.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1125544	2023
Metabolism	Production of biofuels from pretreated microalgae biomass by anaerobic fermentation with immobilized Clostridium acetobutylicum cells.	Efremenko EN, Nikolskaya AB, Lyagin IV, Senko OV, Makhlis TA, Stepanov NA, Maslova OV, Mamedova F, Varfolomeev SD.	Bioresour Technol	10.1016/j.biortech.2012.03.049	2012
Pathogenicity	A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--solvent stress caused by a transient n-butanol pulse.	Janssen H, Grimmler C, Ehrenreich A, Bahl H, Fischer RJ.	J Biotechnol	10.1016/j.jbiotec.2012.03.027	2012
	CAC2634-disrupted mutant of Clostridium acetobutylicum can be electrotransformed in air.	Dong H, Tao W, Zhu L, Zhang Y, Li Y.	Lett Appl Microbiol	10.1111/j.1472-765x.2011.03111.x	2011
Metabolism	Continuous Butanol Fermentation of Dilute Acid-Pretreated De-oiled Rice Bran by Clostridium acetobutylicum YM1.	Al-Shorgani NKN, Al-Tabib AI, Kadier A, Zanil MF, Lee KM, Kalil MS.	Sci Rep	10.1038/s41598-019-40840-y	2019
Metabolism	Deletion of Re-citrate synthase allows for analysis of contributions of tricarboxylic acid cycle directionality to the growth of Heliomicrobium modesticaldum.	Layton AM, McCauley C, Redding KE.	Appl Environ Microbiol	10.1128/aem.01772-24	2025
Metabolism	A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures.	Millat T, Janssen H, Thorn GJ, King JR, Bahl H, Fischer RJ, Wolkenhauer O.	Appl Microbiol Biotechnol	10.1007/s00253-013-4860-7	2013
Metabolism	A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--cellular behavior in adaptation to n-butanol.	Schwarz KM, Kuit W, Grimmler C, Ehrenreich A, Kengen SW.	J Biotechnol	10.1016/j.jbiotec.2012.03.018	2012
Enzymology	Biochemical and kinetic characterization of radical S-adenosyl-L-methionine enzyme HydG.	Driesener RC, Duffus BR, Shepard EM, Bruzas IR, Duschene KS, Coleman NJ, Marrison AP, Salvadori E, Kay CW, Peters JW, Broderick JB, Roach PL.	Biochemistry	10.1021/bi401143s	2013
Metabolism	Effect of iron limitation and fur gene inactivation on the transcriptional profile of the strict anaerobe Clostridium acetobutylicum.	Vasileva D, Janssen H, Honicke D, Ehrenreich A, Bahl H.	Microbiology (Reading)	10.1099/mic.0.056978-0	2012
Pathogenicity	The Acinetobacter baumannii model can explain the role of small non-coding RNAs as potential mediators of host-pathogen interactions.	Sarshar M, Scribano D, Palamara AT, Ambrosi C, Masotti A.	Front Mol Biosci	10.3389/fmolb.2022.1088783	2022
Metabolism	Steady-state catalytic wave-shapes for 2-electron reversible electrocatalysts and enzymes.	Fourmond V, Baffert C, Sybirna K, Lautier T, Abou Hamdan A, Dementin S, Soucaille P, Meynial-Salles I, Bottin H, Leger C.	J Am Chem Soc	10.1021/ja311607s	2013
Metabolism	Acetone-butanol-ethanol fermentation in a continuous and closed-circulating fermentation system with PDMS membrane bioreactor.	Chen C, Xiao Z, Tang X, Cui H, Zhang J, Li W, Ying C.	Bioresour Technol	10.1016/j.biortech.2012.10.077	2013
Metabolism	Global transcriptional changes of Clostridium acetobutylicum cultures with increased butanol:acetone ratios.	Honicke D, Janssen H, Grimmler C, Ehrenreich A, Lutke-Eversloh T.	N Biotechnol	10.1016/j.nbt.2012.01.001	2012
Metabolism	Controlling the oxidoreduction potential of the culture of Clostridium acetobutylicum leads to an earlier initiation of solventogenesis, thus increasing solvent productivity.	Wang S, Zhu Y, Zhang Y, Li Y.	Appl Microbiol Biotechnol	10.1007/s00253-011-3570-2	2012
	Decolorization and biodegradation of remazol reactive dyes by Clostridium species.	Ekambaram SP, Perumal SS, Annamalai U.	3 Biotech	10.1007/s13205-015-0335-0	2016
Metabolism	Use of the composite membrane of poly(ether-block-amide) and carbon nanotubes (CNTs) in a pervaporation system incorporated with fermentation for butanol production by Clostridium acetobutylicum.	Yen HW, Chen ZH, Yang IK.	Bioresour Technol	10.1016/j.biortech.2012.01.017	2012
	Clostridium strain FAM25158, a unique endospore-forming bacterium related to Clostridium tyrobutyricum and isolated from Emmental cheese shows low tolerance to salt.	Princic L, Burtscher J, Sacken P, Krajnc T, Domig KJ.	Front Microbiol	10.3389/fmicb.2024.1353321	2024
Metabolism	Microbial production of short-chain alkanes.	Choi YJ, Lee SY.	Nature	10.1038/nature12536	2013
Metabolism	Development of an anhydrotetracycline-inducible gene expression system for solvent-producing Clostridium acetobutylicum: A useful tool for strain engineering.	Dong H, Tao W, Zhang Y, Li Y.	Metab Eng	10.1016/j.ymben.2011.10.004	2012
Metabolism	A synthetic O2 -tolerant butanol pathway exploiting native fatty acid biosynthesis in Escherichia coli.	Pasztor A, Kallio P, Malatinszky D, Akhtar MK, Jones PR.	Biotechnol Bioeng	10.1002/bit.25324	2015
Metabolism	A modified pathway for the production of acetone in Escherichia coli.	May A, Fischer RJ, Maria Thum S, Schaffer S, Verseck S, Durre P, Bahl H.	Metab Eng	10.1016/j.ymben.2012.08.001	2013
Metabolism	Improved n-butanol tolerance in Escherichia coli by controlling membrane related functions.	Bui le M, Lee JY, Geraldi A, Rahman Z, Lee JH, Kim SC.	J Biotechnol	10.1016/j.jbiotec.2015.03.025	2015
	NADH-based kinetic model for acetone-butanol-ethanol production by Clostridium.	Quintero-Diaz JC, Mendoza DF, Avignone-Rossa C.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1294355	2023
Metabolism	Iron-sulfur cluster coordination in the [FeFe]-hydrogenase H cluster biosynthetic factor HydF.	Joshi N, Shepard EM, Byer AS, Swanson KD, Broderick JB, Peters JW.	FEBS Lett	10.1016/j.febslet.2012.09.028	2012
Metabolism	Integration of chemical catalysis with extractive fermentation to produce fuels.	Anbarasan P, Baer ZC, Sreekumar S, Gross E, Binder JB, Blanch HW, Clark DS, Toste FD.	Nature	10.1038/nature11594	2012
Genetics	Global soil metagenomics reveals distribution and predominance of Deltaproteobacteria in nitrogen-fixing microbiome.	Masuda Y, Mise K, Xu Z, Zhang Z, Shiratori Y, Senoo K, Itoh H.	Microbiome	10.1186/s40168-024-01812-1	2024
Metabolism	Genetic modifications and introduction of heterologous pdc genes in Enterococcus faecalis for its use in production of bioethanol.	Rana NF, Gente S, Rince A, Auffray Y, Laplace JM.	Biotechnol Lett	10.1007/s10529-012-0964-x	2012
Metabolism	Covalent attachment of FeFe hydrogenases to carbon electrodes for direct electron transfer.	Baffert C, Sybirna K, Ezanno P, Lautier T, Hajj V, Meynial-Salles I, Soucaille P, Bottin H, Leger C.	Anal Chem	10.1021/ac301812s	2012
Enzymology	DNA microarrays on ultraviolet-modified surfaces for speciation of bacteria.	Liu Y, He J, Yang KL.	Anal Biochem	10.1016/j.ab.2013.10.033	2014
Metabolism	Use of poly(ether-block-amide) in pervaporation coupling with a fermentor to enhance butanol production in the cultivation of Clostridium acetobutylicum.	Yen HW, Lin SF, Yang IK.	J Biosci Bioeng	10.1016/j.jbiosc.2011.10.025	2012
Metabolism	Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production.	Lutke-Eversloh T, Bahl H.	Curr Opin Biotechnol	10.1016/j.copbio.2011.01.011	2011
Metabolism	Controlling autonomous underwater floating platforms using bacterial fermentation.	Biffinger JC, Fitzgerald LA, Howard EC, Petersen ER, Fulmer PA, Wu PK, Ringeisen BR.	Appl Microbiol Biotechnol	10.1007/s00253-012-4296-5	2013
Enzymology	Fantastic [FeFe]-Hydrogenases and Where to Find Them.	Morra S.	Front Microbiol	10.3389/fmicb.2022.853626	2022
Metabolism	A selection platform for carbon chain elongation using the CoA-dependent pathway to produce linear higher alcohols.	Machado HB, Dekishima Y, Luo H, Lan EI, Liao JC.	Metab Eng	10.1016/j.ymben.2012.07.002	2012
Metabolism	Engineering the robustness of Clostridium acetobutylicum by introducing glutathione biosynthetic capability.	Zhu L, Dong H, Zhang Y, Li Y.	Metab Eng	10.1016/j.ymben.2011.01.009	2011
	Contribution of preoperative gut microbiota in postoperative neurocognitive dysfunction in elderly patients undergoing orthopedic surgery.	Bi J, Xu Y, Li S, Zhan G, Hua D, Tan J, Chi X, Xiang H, Guo F, Luo A.	Front Aging Neurosci	10.3389/fnagi.2023.1108205	2023
	Food selectivity of anaerobic protists and direct evidence for methane production using carbon from prey bacteria by endosymbiotic methanogen.	Hirakata Y, Hatamoto M, Oshiki M, Watari T, Araki N, Yamaguchi T.	ISME J	10.1038/s41396-020-0660-0	2020
	Two layered strategy for cost effective production of pectinase: immobilization of yeast and utilization of crude substrate.	Ejaz U, Hanif H, Sohail M.	Heliyon	10.1016/j.heliyon.2020.e05456	2020
Metabolism	[Genetic modification systems for Clostridium acetobutylicum].	Dong H, Zhang Y, Li Y.	Sheng Wu Gong Cheng Xue Bao		2010
Enzymology	Impact of pH and butyric acid on butanol production during batch fermentation using a new local isolate of Clostridium acetobutylicum YM1.	Al-Shorgani NKN, Kalil MS, Yusoff WMW, Hamid AA.	Saudi J Biol Sci	10.1016/j.sjbs.2017.03.020	2018
	Reviving the Weizmann process for commercial n-butanol production.	Nguyen NP, Raynaud C, Meynial-Salles I, Soucaille P.	Nat Commun	10.1038/s41467-018-05661-z	2018
Metabolism	Switching Clostridium acetobutylicum to an ethanol producer by disruption of the butyrate/butanol fermentative pathway.	Lehmann D, Lutke-Eversloh T.	Metab Eng	10.1016/j.ymben.2011.04.006	2011
	Use of proteomic tools in microbial engineering for biofuel production.	Mao S, Jia K, Zhang Y, Li Y.	Methods Mol Biol	10.1007/978-1-61779-483-4_10	2012
	Lipidomic Analysis of Clostridium cadaveris and Clostridium fallax.	Guan Z, Garrett TA, Goldfine H.	Lipids	10.1002/lipd.12181	2019
	Integrated omics approach to unveil antifungal bacterial polyynes as acetyl-CoA acetyltransferase inhibitors.	Lin CC, Hoo SY, Ma LT, Lin C, Huang KF, Ho YN, Sun CH, Lee HJ, Chen PY, Shu LJ, Wang BW, Hsu WC, Ko TP, Yang YL.	Commun Biol	10.1038/s42003-022-03409-6	2022
Metabolism	Identification of a gene involved in plasmid structural instability in Corynebacterium glutamicum.	Kitade Y, Okino S, Gunji W, Hiraga K, Suda M, Suzuki N, Inui M, Yukawa H.	Appl Microbiol Biotechnol	10.1007/s00253-013-4934-6	2013
	Anaerobic fluorescent reporters for live imaging of Pseudomonas aeruginosa.	Tchagang CF, Mah TF, Campbell-Valois FX.	Front Microbiol	10.3389/fmicb.2023.1245755	2023
Metabolism	Screening and characteristics of a butanol-tolerant strain and butanol production from enzymatic hydrolysate of NaOH-pretreated corn stover.	Gao K, Li Y, Tian S, Yang X.	World J Microbiol Biotechnol	10.1007/s11274-012-1107-1	2012
	Extension temperature of 60°C required for PCR amplification of large DNA fragments (>5 kb) from a low GC bacterium Clostridium acetobutylicum	Garza E, Finan C, Iverson A, Zhou S.	World J Microbiol Biotechnol	10.1007/s11274-010-0451-2	2011
	Impact of Vanadium-Titanium-Magnetite Mining Activities on Endophytic Bacterial Communities and Functions in the Root Systems of Local Plants.	Xiong Z, Zhang Y, Chen X, Sha A, Xiao W, Luo Y, Peng L, Zou L, Li Q.	Genes (Basel)	10.3390/genes15050526	2024
	The Mutation of the DNA-Binding Domain of Fur Protein Enhances the Pathogenicity of Edwardsiella piscicida via Inducing Overpowering Pyroptosis.	Niu M, Sui Z, Jiang G, Wang L, Yao X, Hu Y.	Microorganisms	10.3390/microorganisms12010011	2023
	Butanol-isopropanol fermentation with oxygen-tolerant Clostridium beijerinckii XH29.	Yao X, Zhang Q, Fan Y, Xu X, Liu Z.	AMB Express	10.1186/s13568-022-01399-6	2022
Metabolism	Metabolic engineering of Corynebacterium glutamicum for increasing the production of L-ornithine by increasing NADPH availability.	Jiang LY, Zhang YY, Li Z, Liu JZ.	J Ind Microbiol Biotechnol	10.1007/s10295-013-1306-2	2013
Metabolism	Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant.	Mao S, Luo Y, Bao G, Zhang Y, Li Y, Ma Y.	Mol Biosyst	10.1039/c0mb00330a	2011
	Lactate-mediated mixotrophic co-cultivation of Clostridium drakei and recombinant Acetobacterium woodii for autotrophic production of volatile fatty acids.	Mook A, Herzog J, Walther P, Durre P, Bengelsdorf FR.	Microb Cell Fact	10.1186/s12934-024-02481-3	2024
Metabolism	Biobutanol.	Dong H, Tao W, Dai Z, Yang L, Gong F, Zhang Y, Li Y.	Adv Biochem Eng Biotechnol	10.1007/10_2011_128	2012
	Bayesian metabolic flux analysis reveals intracellular flux couplings.	Heinonen M, Osmala M, Mannerstrom H, Wallenius J, Kaski S, Rousu J, Lahdesmaki H.	Bioinformatics	10.1093/bioinformatics/btz315	2019
Metabolism	Ancestral sporulation initiation.	Durre P.	Mol Microbiol	10.1111/j.1365-2958.2011.07628.x	2011
Metabolism	Characterization of photochemical processes for H2 production by CdS nanorod-[FeFe] hydrogenase complexes.	Brown KA, Wilker MB, Boehm M, Dukovic G, King PW.	J Am Chem Soc	10.1021/ja2116348	2012
Metabolism	[Phosphoproteomic investigation of Clostridium acetobutylicum].	Bai X, Zhao J, Wang Q, Tong W, Zhang J, Zi J, Chen Z, Liu S, Wang Q.	Sheng Wu Gong Cheng Xue Bao		2010
	Separation of n-Butanol from Aqueous Solutions via Pervaporation Using PDMS/ZIF-8 Mixed-Matrix Membranes of Different Particle Sizes.	Zamani A, Thibault J, Tezel FH.	Membranes (Basel)	10.3390/membranes13070632	2023
Metabolism	U(VI) reduction by spores of Clostridium acetobutylicum.	Vecchia ED, Veeramani H, Suvorova EI, Wigginton NS, Bargar JR, Bernier-Latmani R.	Res Microbiol	10.1016/j.resmic.2010.08.001	2010
	High methanol-to-formate ratios induce butanol production in Eubacterium limosum.	Wood JC, Marcellin E, Plan MR, Virdis B.	Microb Biotechnol	10.1111/1751-7915.13963	2022
Metabolism	Metabolite analysis of Clostridium acetobutylicum: fermentation in a microbial fuel cell.	Finch AS, Mackie TD, Sund CJ, Sumner JJ.	Bioresour Technol	10.1016/j.biortech.2010.06.149	2011
Enzymology	Renewable synthesis of n-butyraldehyde from glucose by engineered Escherichia coli.	Ku JT, Simanjuntak W, Lan EI.	Biotechnol Biofuels	10.1186/s13068-017-0978-7	2017
Metabolism	[Key enzymes in butanol fermentation by a facultative anaerobe Bacillus sp. TSH1].	Duan X, Wang G, Liu H, Xue J, Zhang J.	Sheng Wu Gong Cheng Xue Bao		2013
	Dietary fiber modulates gut microbiome and metabolome in a host sex-specific manner in a murine model of aging.	Kadyan S, Park G, Wang B, Nagpal R.	Front Mol Biosci	10.3389/fmolb.2023.1182643	2023
Metabolism	Fed-batch fermentation for n-butanol production from cassava bagasse hydrolysate in a fibrous bed bioreactor with continuous gas stripping.	Lu C, Zhao J, Yang ST, Wei D.	Bioresour Technol	10.1016/j.biortech.2011.10.089	2012
Metabolism	Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum.	Grimmler C, Janssen H, Krausse D, Fischer RJ, Bahl H, Durre P, Liebl W, Ehrenreich A.	J Mol Microbiol Biotechnol	10.1159/000320973	2011
	Ribosome Pool Engineering Increases Protein Biosynthesis Yields.	Kofman C, Willi JA, Karim AS, Jewett MC.	ACS Cent Sci	10.1021/acscentsci.3c01413	2024
	A Review of the Valorization of Dairy Industry Wastes through Thermochemical, Biological, and Integrated Processes for Value-Added Products.	Udourioh GA, Solomon MM, Okolie JA.	Food Sci Anim Resour	10.5851/kosfa.2025.e2	2025
Metabolism	Direct and Indirect Reduction of Cr(VI) by Fermentative Fe(III)-Reducing Cellulomonas sp. Strain Cellu-2a.	Khanal A, Hur HG, Fredrickson JK, Lee JH.	J Microbiol Biotechnol	10.4014/jmb.2107.07038	2021
	Genetic modifications and introduction of heterologous pdc genes in Enterococcus faecalis for its use in production of bioethanol	Rana NF, Gente S, Rince A, Auffray Y, Laplace JM.	Biotechnol Lett		2012
Enzymology	Electrochemical Characterization of a Complex FeFe Hydrogenase, the Electron-Bifurcating Hnd From Desulfovibrio fructosovorans.	Jacq-Bailly A, Benvenuti M, Payne N, Kpebe A, Felbek C, Fourmond V, Leger C, Brugna M, Baffert C.	Front Chem	10.3389/fchem.2020.573305	2020
	Modulation of riboflavin biosynthesis and utilization in mycobacteria.	Chengalroyen MD, Mehaffy C, Lucas M, Bauer N, Raphela ML, Oketade N, Warner DF, Lewinsohn DA, Lewinsohn DM, Dobos KM, Mizrahi V.	Microbiol Spectr	10.1128/spectrum.03207-23	2024
	Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.	Yen JY, Nazem-Bokaee H, Freedman BG, Athamneh AI, Senger RS.	Biotechnol J	10.1002/biot.201200234	2013
Metabolism	Peptidoglycan turnover and recycling in Gram-positive bacteria.	Reith J, Mayer C.	Appl Microbiol Biotechnol	10.1007/s00253-011-3486-x	2011
Metabolism	Characterization of two novel butanol dehydrogenases involved in butanol degradation in syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528.	Tan Y, Liu J, Liu Z, Li F.	J Basic Microbiol	10.1002/jobm.201300046	2014
Metabolism	Butanol production by Clostridium acetobutylicum in a continuous packed bed reactor.	Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P.	J Ind Microbiol Biotechnol	10.1007/s10295-010-0707-8	2010
Metabolism	Transcriptional analysis of catabolite repression in Clostridium acetobutylicum growing on mixtures of D-glucose and D-xylose.	Grimmler C, Held C, Liebl W, Ehrenreich A.	J Biotechnol	10.1016/j.jbiotec.2010.09.938	2010
Enzymology	Ferredoxin-linked flavoenzyme defines a family of pyridine nucleotide-independent thioredoxin reductases.	Buey RM, Fernandez-Justel D, de Pereda JM, Revuelta JL, Schurmann P, Buchanan BB, Balsera M.	Proc Natl Acad Sci U S A	10.1073/pnas.1812781115	2018
	Analysis of heterologous expression of phaCBA promotes the acetoin stress response mechanism in Bacillus subtilis using transcriptomics and metabolomics approaches.	Li T, Li H, Zhong L, Qin Y, Guo G, Liu Z, Hao N, Ouyang P.	Microb Cell Fact	10.1186/s12934-024-02334-z	2024
Metabolism	Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide.	Lan EI, Liao JC.	Metab Eng	10.1016/j.ymben.2011.04.004	2011
Enzymology	Role of ammonia-lyases in the synthesis of the dithiomethylamine ligand during [FeFe]-hydrogenase maturation.	Pagnier A, Balci B, Shepard EM, Yang H, Drena A, Holliday GL, Hoffman BM, Broderick WE, Broderick JB.	J Biol Chem	10.1016/j.jbc.2024.107760	2024
Metabolism	A novel combinatorial biocatalytic approach for producing antibacterial compounds effective against Mycobacterium tuberculosis (TB).	McClay K, Wan B, Wang Y, Cho S, Yu J, Santarsiero B, Mehboob S, Johnson M, Franzblau S, Steffan R.	Appl Microbiol Biotechnol	10.1007/s00253-013-5012-9	2013
Metabolism	[Comparative genomic reconstruction of regulatory and metabolic networks in bacteria].	Yang C.	Sheng Wu Gong Cheng Xue Bao		2010
Metabolism	Protein Acetylation and Butyrylation Regulate the Phenotype and Metabolic Shifts of the Endospore-forming Clostridium acetobutylicum.	Xu JY, Xu Z, Liu X, Tan M, Ye BC.	Mol Cell Proteomics	10.1074/mcp.ra117.000372	2018
Metabolism	Functional Characterization of COG1713 (YqeK) as a Novel Diadenosine Tetraphosphate Hydrolase Family.	Minazzato G, Gasparrini M, Amici A, Cianci M, Mazzola F, Orsomando G, Sorci L, Raffaelli N.	J Bacteriol	10.1128/jb.00053-20	2020
Enzymology	Catalytic turnover of [FeFe]-hydrogenase based on single-molecule imaging.	Madden C, Vaughn MD, Diez-Perez I, Brown KA, King PW, Gust D, Moore AL, Moore TA.	J Am Chem Soc	10.1021/ja207461t	2012
Metabolism	Zero-power autonomous buoyancy system controlled by microbial gas production.	Wu PK, Fitzgerald LA, Biffinger JC, Spargo BJ, Houston BH, Bucaro JA, Ringeisen BR.	Rev Sci Instrum	10.1063/1.3587623	2011
Metabolism	The [FeFe]-hydrogenase maturase HydF from Clostridium acetobutylicum contains a CO and CN- ligated iron cofactor.	Czech I, Silakov A, Lubitz W, Happe T.	FEBS Lett	10.1016/j.febslet.2009.12.016	2010
	Delivering Therapeutics to Glioblastoma: Overcoming Biological Constraints.	Mathew EN, Berry BC, Yang HW, Carroll RS, Johnson MD.	Int J Mol Sci	10.3390/ijms23031711	2022
Metabolism	Expression, purification and characterization of two Clostridium acetobutylicum flavodoxins: potential electron transfer partners for CYP152A2.	Malca SH, Girhard M, Schuster S, Durre P, Urlacher VB.	Biochim Biophys Acta	10.1016/j.bbapap.2010.06.013	2011
Metabolism	Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield.	Mao S, Luo Y, Zhang T, Li J, Bao G, Zhu Y, Chen Z, Zhang Y, Li Y, Ma Y.	J Proteome Res	10.1021/pr9012078	2010
Enzymology	Exploiting hydrogenases for biocatalytic hydrogenations.	Sokolova D, Vincent KA.	Chem Commun (Camb)	10.1039/d4cc04525d	2024
Metabolism	Two-stage in situ gas stripping for enhanced butanol fermentation and energy-saving product recovery.	Xue C, Zhao J, Liu F, Lu C, Yang ST, Bai FW.	Bioresour Technol	10.1016/j.biortech.2012.07.062	2013
Metabolism	Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum.	Servinsky MD, Kiel JT, Dupuy NF, Sund CJ.	Microbiology (Reading)	10.1099/mic.0.037085-0	2010
Metabolism	The [FeFe]-hydrogenase maturation protein HydF contains a H-cluster like [4Fe4S]-2Fe site.	Czech I, Stripp S, Sanganas O, Leidel N, Happe T, Haumann M.	FEBS Lett	10.1016/j.febslet.2010.11.052	2011
Metabolism	Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions.	Mowlick S, Takehara T, Kaku N, Ueki K, Ueki A.	Appl Microbiol Biotechnol	10.1007/s00253-012-4532-z	2013
	Designing and Constructing a Novel Artificial Pathway for Malonic Acid Production Biologically.	Gu S, Zhao Z, Yao Y, Li J, Tian C.	Front Bioeng Biotechnol	10.3389/fbioe.2021.820507	2021
	A fluorescent reporter system for anaerobic thermophiles.	Hocq R, Bottone S, Gautier A, Pflugl S.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1226889	2023
Metabolism	Inhibition of biocatalysis in [Fe-Fe] hydrogenase by oxygen: molecular dynamics and density functional theory calculations.	Hong G, Pachter R.	ACS Chem Biol	10.1021/cb3001149	2012
Metabolism	Screened butanol-tolerant Enterococcus faecium capable of butanol production.	Ting CN, Wu J, Takahashi K, Endo A, Zhao H.	Appl Biochem Biotechnol	10.1007/s12010-012-9888-0	2012
Metabolism	Fecal Metaproteomics Reveals Reduced Gut Inflammation and Changed Microbial Metabolism Following Lifestyle-Induced Weight Loss.	Biemann R, Buss E, Benndorf D, Lehmann T, Schallert K, Puttker S, Reichl U, Isermann B, Schneider JG, Saake G, Heyer R.	Biomolecules	10.3390/biom11050726	2021
Metabolism	Performance of batch, fed-batch, and continuous A-B-E fermentation with pH-control.	Li SY, Srivastava R, Suib SL, Li Y, Parnas RS.	Bioresour Technol	10.1016/j.biortech.2010.12.078	2011
	Review of recent advances in improvement strategies for biofuels production from cyanobacteria.	Mescouto VA, Ferreira LDC, Paiva RJ, Oliveira DT, Santana MO, Rocha Filho GND, Luque R, Noronha RCR, Nascimento LASD.	Heliyon	10.1016/j.heliyon.2024.e40293	2024
Metabolism	High-performance hydrogen production and oxidation electrodes with hydrogenase supported on metallic single-wall carbon nanotube networks.	Svedruzic D, Blackburn JL, Tenent RC, Rocha JD, Vinzant TB, Heben MJ, King PW.	J Am Chem Soc	10.1021/ja104785e	2011
	Metabolic engineering of Clostridium thermocellum for n-butanol production from cellulose.	Tian L, Conway PM, Cervenka ND, Cui J, Maloney M, Olson DG, Lynd LR.	Biotechnol Biofuels	10.1186/s13068-019-1524-6	2019
Metabolism	Production of acetone, butanol, and ethanol from biomass of the green seaweed Ulva lactuca.	van der Wal H, Sperber BL, Houweling-Tan B, Bakker RR, Brandenburg W, Lopez-Contreras AM.	Bioresour Technol	10.1016/j.biortech.2012.10.094	2013
Metabolism	Butyrate enhances Clostridioides difficile sporulation in vitro.	Baldassare MA, Bhattacharjee D, Coles JD, Nelson S, McCollum CA, Seekatz AM.	J Bacteriol	10.1128/jb.00138-23	2023
Genetics	A genomic analysis reveals the diversity of cellulosome displaying bacteria.	Minor CM, Takayesu A, Ha SM, Salwinski L, Sawaya MR, Pellegrini M, Clubb RT.	Front Microbiol	10.3389/fmicb.2024.1473396	2024
	Propionate Attenuates Growth of Oral Streptococci through Enhancing Methionine Biosynthesis.	Park T, Im J, Kim AR, Lee D, Jeong S, Yun CH, Han SH.	J Microbiol Biotechnol	10.4014/jmb.2205.05037	2022
Metabolism	Disruption of the acetoacetate decarboxylase gene in solvent-producing Clostridium acetobutylicum increases the butanol ratio.	Jiang Y, Xu C, Dong F, Yang Y, Jiang W, Yang S.	Metab Eng	10.1016/j.ymben.2009.06.002	2009
Biotechnology	An artificial coculture fermentation system for industrial propanol production.	Hocq R, Sauer M.	FEMS Microbes	10.1093/femsmc/xtac013	2022
	Predicting Selective RNA Processing and Stabilization Operons in Clostridium spp.	Bhaskar Y, Su X, Xu C, Xu J.	Front Microbiol	10.3389/fmicb.2021.673349	2021
Enzymology	Atypical effect of temperature tuning on the insertion of the catalytic iron-sulfur center in a recombinant [FeFe]-hydrogenase.	Morra S, Cordara A, Gilardi G, Valetti F.	Protein Sci	10.1002/pro.2805	2015
	Functional domains of Acinetobacter bacteriophage tail fibers.	Peters DL, Gaudreault F, Chen W.	Front Microbiol	10.3389/fmicb.2024.1230997	2024
Metabolism	Modeling the folding and hydrogen production of Clostridium acetobutylicum and Clostridium saccharobutylium mutants using electrostatic potential surfaces and molecular dynamics.	Plummer MA, Plummer SM.	Comput Biol Chem	10.1016/j.compbiolchem.2009.07.016	2009
Proteome	Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars.	Dooley D, Ryu S, Giannone RJ, Edwards J, Dien BS, Slininger PJ, Trinh CT.	mSystems	10.1128/msystems.00952-24	2024
Metabolism	Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing.	Salimi F, Zhuang K, Mahadevan R.	Biotechnol J	10.1002/biot.201000159	2010
Metabolism	Enhancing clostridial acetone-butanol-ethanol (ABE) production and improving fuel properties of ABE-enriched biodiesel by extractive fermentation with biodiesel.	Li Q, Cai H, Hao B, Zhang C, Yu Z, Zhou S, Chenjuan L.	Appl Biochem Biotechnol	10.1007/s12010-010-9010-4	2010
Metabolism	High yield bio-butanol production by solvent-producing bacterial microflora.	Cheng CL, Che PY, Chen BY, Lee WJ, Chien LJ, Chang JS.	Bioresour Technol	10.1016/j.biortech.2011.12.133	2012
	Growth-uncoupled propanediol production in a Thermoanaerobacterium thermosaccharolyticum strain engineered for high ethanol yield.	Herring CD, Ajie MP, Lynd LR.	Sci Rep	10.1038/s41598-023-29220-9	2023
Metabolism	[Quantitative monitoring the concentration changes of organic acids in fermentation process of Clostridium acetobutylicum using capillary ion electrophoresis].	Cheng J, Wang T, Kang J.	Se Pu		2008
Phylogeny	Complete list of canonical post-transcriptional modifications in the Bacillus subtilis ribosome and their link to RbgA driven large subunit assembly.	Popova AM, Jain N, Dong X, Abdollah-Nia F, Britton RA, Williamson JR.	Nucleic Acids Res	10.1093/nar/gkae626	2024
	A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production.	Yong MI, Mohamad MS, Choon YW, Chan WH, Adli HK, Syazwan Wsw KN, Yusoff N, Remli MA.	J Integr Bioinform	10.1515/jib-2022-0003	2022
Metabolism	Butanol production from cane molasses by Clostridium saccharobutylicum DSM 13864: batch and semicontinuous fermentation.	Ni Y, Wang Y, Sun Z.	Appl Biochem Biotechnol	10.1007/s12010-012-9614-y	2012
	Valorization of agricultural wastes for biofuel applications.	Awogbemi O, Kallon DVV.	Heliyon	10.1016/j.heliyon.2022.e11117	2022
Metabolism	Production and Sensing of Butyrate in a Probiotic Escherichia coli Strain.	Bai Y, Mansell TJ.	Int J Mol Sci	10.3390/ijms21103615	2020
	Formate as a supplementary substrate facilitates sugar metabolism and solvent production by Clostridium beijerinckii NCIMB 8052.	Zhao R, Dong W, Yang C, Jiang W, Tian J, Gu Y.	Synth Syst Biotechnol	10.1016/j.synbio.2023.01.005	2023
	Biorefinery of sweet sorghum stem.	Yu J, Zhang T, Zhong J, Zhang X, Tan T.	Biotechnol Adv	10.1016/j.biotechadv.2012.01.014	2012
	Outlook on Synthetic Biology-Driven Hydrogen Production: Lessons from Algal Photosynthesis Applied to Cyanobacteria.	Jaramillo A, Satta A, Pinto F, Faraloni C, Zittelli GC, Silva Benavides AM, Torzillo G, Schumann C, Mendez JF, Berggren G, Lindblad P, Parente M, Esposito S, Diano M.	Energy Fuels	10.1021/acs.energyfuels.4c04772	2025
	CcpA Regulates Staphylococcus aureus Biofilm Formation through Direct Repression of Staphylokinase Expression.	Zheng M, Zhu K, Peng H, Shang W, Zhao Y, Lu S, Rao X, Li M, Zhou R, Li G.	Antibiotics (Basel)	10.3390/antibiotics11101426	2022
Biotechnology	Screening and characterization of butanol-tolerant micro-organisms.	Li J, Zhao JB, Zhao M, Yang YL, Jiang WH, Yang S.	Lett Appl Microbiol	10.1111/j.1472-765x.2010.02808.x	2010
Enzymology	HydG, the "dangler" iron, and catalytic production of free CO and CN^-: implications for [FeFe]-hydrogenase maturation.	Shepard EM, Impano S, Duffus BR, Pagnier A, Duschene KS, Betz JN, Byer AS, Galambas A, McDaniel EC, Watts H, McGlynn SE, Peters JW, Broderick WE, Broderick JB.	Dalton Trans	10.1039/d1dt01359a	2021
Metabolism	Ammonium acetate enhances solvent production by Clostridium acetobutylicum EA 2018 using cassava as a fermentation medium.	Gu Y, Hu S, Chen J, Shao L, He H, Yang Y, Yang S, Jiang W.	J Ind Microbiol Biotechnol	10.1007/s10295-009-0604-1	2009
Metabolism	Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum.	Alsaker KV, Paredes C, Papoutsakis ET.	Biotechnol Bioeng	10.1002/bit.22628	2010
Metabolism	Recent progress on industrial fermentative production of acetone-butanol-ethanol by Clostridium acetobutylicum in China.	Ni Y, Sun Z.	Appl Microbiol Biotechnol	10.1007/s00253-009-2003-y	2009
	Biosynthesis of butyrate from methanol and carbon monoxide by recombinant Acetobacterium woodii.	Chowdhury NP, Litty D, Muller V.	Int Microbiol	10.1007/s10123-022-00234-z	2022
	A CoA-Transferase and Acyl-CoA Dehydrogenase Convert 2-(Carboxymethyl)cyclohexane-1-Carboxyl-CoA During Anaerobic Naphthalene Degradation.	Kong Y, Riebe J, Fessner M, Schaller T, Wolper C, Stappert F, Meckelmann SW, Krajnc M, Weyrauch P, Schmitz OJ, Merten C, Niemeyer J, Hu X, Meckenstock RU.	Environ Microbiol	10.1111/1462-2920.70013	2024
	Optimization of trans-4-hydroxyproline synthesis pathway by rearrangement center carbon metabolism in Escherichia coli.	Gong Y, Wang R, Ma L, Wang S, Li C, Xu Q.	Microb Cell Fact	10.1186/s12934-023-02236-6	2023
	Conversion of lignocellulosic biomass: Production of bioethanol and bioelectricity using wheat straw hydrolysate in electrochemical bioreactor.	Shrivastava A, Sharma RK.	Heliyon	10.1016/j.heliyon.2023.e12951	2023
Metabolism	Enhancement of photoheterotrophic biohydrogen production at elevated temperatures by the expression of a thermophilic clostridial hydrogenase.	Lo SC, Shih SH, Chang JJ, Wang CY, Huang CC.	Appl Microbiol Biotechnol	10.1007/s00253-012-4017-0	2012
Genetics	Genome-Scale Metabolic Network Reconstruction and In Silico Analysis of Hexanoic acid Producing Megasphaera elsdenii.	Lee NR, Lee CH, Lee DY, Park JB.	Microorganisms	10.3390/microorganisms8040539	2020
	Short-chain fatty acid producers in the gut are associated with pediatric multiple sclerosis onset.	Schoeps VA, Zhou X, Horton MK, Zhu F, McCauley KE, Nasr Z, Nasr Z, Virupakshaiah A, Gorman MP, Benson LA, Weinstock-Guttman B, Waldman A, Banwell BL, Bar-Or A, Marrie RA, van Domselaar G, O'Mahony J, Mirza AI, Bernstein CN, Yeh EA, Casper TC, Lynch SV, Tremlett H, Baranzini S, Waubant E, US Network of Pediatric MS Centers.	Ann Clin Transl Neurol	10.1002/acn3.51944	2024
Metabolism	Metabolite labelling reveals hierarchies in Clostridium acetobutylicum that selectively channel carbons from sugar mixtures towards biofuel precursors.	Aristilde L.	Microb Biotechnol	10.1111/1751-7915.12459	2017
	Production of fructan synthesis/hydrolysis of endophytic bacteria involved in inulin production in Jerusalem artichoke.	Khamwan S, Boonlue S, Mongkolthanaruk W.	3 Biotech	10.1007/s13205-022-03374-1	2022
	Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules.	Yao X, Chen C, Wang Y, Dong S, Liu YJ, Li Y, Cui Z, Gong W, Perrett S, Yao L, Lamed R, Bayer EA, Cui Q, Feng Y.	Sci Adv	10.1126/sciadv.abd7182	2020
	Modelling and simulation of multicomponent acetone-butanol-ethanol distillation process in a sieve tray column.	Pudjiastuti L, Widjaja T, Iskandar KK, Sahid F, Nurkhamidah S, Altway A, Putra AP.	Heliyon	10.1016/j.heliyon.2021.e06641	2021
	Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases.	Martini MA, Bikbaev K, Pang Y, Lorent C, Wiemann C, Breuer N, Zebger I, DeBeer S, Span I, Bjornsson R, Birrell JA, Rodriguez-Macia P.	Chem Sci	10.1039/d2sc06098a	2023
Enzymology	The draft genome sequence of Clostridium sp. strain LJ4 with high furan and phenolic derivates' tolerances occurring from lignocellulosic hydrolysates.	Liu J, Jiang Y, Chen T, Dong W, Zhang W, Ma J, Jiang M, Xin F.	3 Biotech	10.1007/s13205-018-1430-9	2018
	Feedstock variability impacts the bioconversion of sugar and lignin streams derived from corn stover by Clostridium tyrobutyricum and engineered Pseudomonas putida.	Ruhl IA, Nelson RS, Katahira R, Kruger JS, Chen X, Haugen SJ, Ingraham MA, Woodworth SP, Alt H, Ramirez KJ, Peterson DJ, Ding L, Laible PD, Linger JG, Salvachua D.	Microb Biotechnol	10.1111/1751-7915.70006	2024
Metabolism	Reconstructing the clostridial n-butanol metabolic pathway in Lactobacillus brevis.	Berezina OV, Zakharova NV, Brandt A, Yarotsky SV, Schwarz WH, Zverlov VV.	Appl Microbiol Biotechnol	10.1007/s00253-010-2480-z	2010
	The potential of native and engineered Clostridia for biomass biorefining.	Ponsetto P, Sasal EM, Mazzoli R, Valetti F, Gilardi G.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1423935	2024
	Identification of a Thermostable Levansucrase from Pseudomonas orientalis That Allows Unique Product Specificity at Different Temperatures.	Guang C, Zhang X, Ni D, Zhang W, Xu W, Mu W.	Polymers (Basel)	10.3390/polym15061435	2023
	Physiological changes and growth behavior of Corynebacterium glutamicum cells in biofilm.	Zhang D, Shen J, Peng X, Gao S, Wang Z, Zhang H, Sun W, Niu H, Ying H, Zhu C, Chen Y, Liu D.	Front Microbiol	10.3389/fmicb.2022.983545	2022
Metabolism	Metabolic Exchange and Energetic Coupling between Nutritionally Stressed Bacterial Species: Role of Quorum-Sensing Molecules.	Ranava D, Backes C, Karthikeyan G, Ouari O, Soric A, Guiral M, Cardenas ML, Giudici-Orticoni MT.	mBio	10.1128/mbio.02758-20	2021
Metabolism	A role for His-160 in peroxide inhibition of S. cerevisiae S-formylglutathione hydrolase: evidence for an oxidation sensitive motif.	Legler PM, Leary DH, Hervey WJ, Millard CB.	Arch Biochem Biophys	10.1016/j.abb.2012.08.001	2012
Metabolism	Controlled assembly of hydrogenase-CdTe nanocrystal hybrids for solar hydrogen production.	Brown KA, Dayal S, Ai X, Rumbles G, King PW.	J Am Chem Soc	10.1021/ja101031r	2010
Metabolism	Enhanced butanol production by Clostridium acetobutylicum NCIMB 13357 grown on date fruit as carbon source in P2 medium.	Khamaiseh EI, Abdul Hamid A, Abdeshahian P, Wan Yusoff WM, Kalil MS.	ScientificWorldJournal	10.1155/2014/395754	2014
	Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demand.	Kutscha R, Tomin T, Birner-Gruenberger R, Bekiaris PS, Klamt S, Pflugl S.	Biotechnol Biofuels Bioprod	10.1186/s13068-024-02534-0	2024
Genetics	Required Gene Set for Autotrophic Growth of Clostridium autoethanogenum.	Woods C, Humphreys CM, Tomi-Andrino C, Henstra AM, Kopke M, Simpson SD, Winzer K, Minton NP.	Appl Environ Microbiol	10.1128/aem.02479-21	2022
	The gut microbiota is associated with the small intestinal paracellular permeability and the development of the immune system in healthy children during the first two years of life.	Kaczmarczyk M, Lober U, Adamek K, Wegrzyn D, Skonieczna-Zydecka K, Malinowski D, Loniewski I, Marko L, Ulas T, Forslund SK, Loniewska B.	J Transl Med	10.1186/s12967-021-02839-w	2021
Metabolism	Aldehyde-alcohol dehydrogenase and/or thiolase overexpression coupled with CoA transferase downregulation lead to higher alcohol titers and selectivity in Clostridium acetobutylicum fermentations.	Sillers R, Al-Hinai MA, Papoutsakis ET.	Biotechnol Bioeng	10.1002/bit.22058	2009
Enzymology	Unveiling the mechanisms and biosynthesis of a novel nickel-pincer enzyme.	Chatterjee S, Gatreddi S, Gupta S, Nevarez JL, Rankin JA, Turmo A, Hu J, Hausinger RP.	Biochem Soc Trans	10.1042/bst20220490	2022
	Increased NADPH Supply Enhances Glycolysis Metabolic Flux and L-methionine Production in Corynebacterium glutamicum.	Liu B, Sun X, Liu Y, Yang M, Wang L, Li Y, Wang J.	Foods	10.3390/foods11071031	2022
Metabolism	Substrate promiscuity of polyketide synthase enables production of tsetse fly attractants 3-ethylphenol and 3-propylphenol by engineering precursor supply in yeast.	Hitschler J, Grininger M, Boles E.	Sci Rep	10.1038/s41598-020-66997-5	2020
Genetics	Whole-Genome Sequence and Fermentation Characteristics of Enterobacter hormaechei UW0SKVC1: A Promising Candidate for Detoxification of Lignocellulosic Biomass Hydrolysates and Production of Value-Added Chemicals.	Kumar S, Agyeman-Duah E, Ujor VC.	Bioengineering (Basel)	10.3390/bioengineering10091090	2023
	Metabolomics Analysis Reveals Global Metabolic Changes in the Evolved E. coli Strain with Improved Growth and 1-Butanol Production in Minimal Medium.	Lavina WA, Sakurai SSM, Pontrelli S, Putri SP, Fukusaki E.	Metabolites	10.3390/metabo10050192	2020
	Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium.	Lo J, Wu C, Humphreys JR, Yang B, Jiang Z, Wang X, Maness P, Tsesmetzis N, Xiong W.	mSystems	10.1128/msystems.01274-22	2023
Enzymology	Relative Activities of the beta-ketoacyl-CoA and Acyl-CoA Reductases Influence Product Profile and Flux in a Reversed beta-Oxidation Pathway.	Courtney DK, Su Y, Jacobson T, Khana D, Ailiani A, Amador-Noguez D, Pfleger BF.	ACS Catal	10.1021/acscatal.3c00379	2023
Enzymology	Desulfoferrodoxin of Clostridium acetobutylicum functions as a superoxide reductase.	Riebe O, Fischer RJ, Bahl H.	FEBS Lett	10.1016/j.febslet.2007.11.008	2007
	PEBA/PDMS Composite Multilayer Hollow Fiber Membranes for the Selective Separation of Butanol by Pervaporation.	Arregoitia-Sarabia C, Gonzalez-Revuelta D, Fallanza M, Ortiz A, Gorri D.	Membranes (Basel)	10.3390/membranes12101007	2022
Metabolism	PerR acts as a switch for oxygen tolerance in the strict anaerobe Clostridium acetobutylicum.	Hillmann F, Fischer RJ, Saint-Prix F, Girbal L, Bahl H.	Mol Microbiol	10.1111/j.1365-2958.2008.06192.x	2008
	Type I fimbriae subunit fimA enhances Escherichia coli biofilm formation but affects L-threonine carbon distribution.	Liu Q, Zhu J, Liu N, Sun W, Yu B, Niu H, Liu D, Ouyang P, Ying H, Chen Y, Zhao G, Chen T.	Front Bioeng Biotechnol	10.3389/fbioe.2022.904636	2022
Enzymology	Complete activity profile of Clostridium acetobutylicum [FeFe]-hydrogenase and kinetic parameters for endogenous redox partners.	Demuez M, Cournac L, Guerrini O, Soucaille P, Girbal L.	FEMS Microbiol Lett	10.1111/j.1574-6968.2007.00868.x	2007
Metabolism	Engineering alternative butanol production platforms in heterologous bacteria.	Nielsen DR, Leonard E, Yoon SH, Tseng HC, Yuan C, Prather KL.	Metab Eng	10.1016/j.ymben.2009.05.003	2009
Metabolism	Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways.	Martinez I, Zhu J, Lin H, Bennett GN, San KY.	Metab Eng	10.1016/j.ymben.2008.09.001	2008
Metabolism	Metabolic engineering of the non-sporulating, non-solventogenic Clostridium acetobutylicum strain M5 to produce butanol without acetone demonstrate the robustness of the acid-formation pathways and the importance of the electron balance.	Sillers R, Chow A, Tracy B, Papoutsakis ET.	Metab Eng	10.1016/j.ymben.2008.07.005	2008
	Activity of abrB310 promoter in wild type and spo0A-deficient strains of Clostridium acetobutylicum.	Scotcher MC, Bennett GN.	J Ind Microbiol Biotechnol	10.1007/s10295-008-0341-x	2008
Pathogenicity	Chemical genetic analysis of enoxolone inhibition of Clostridioides difficile toxin production reveals adenine deaminase and ATP synthase as antivirulence targets.	Marreddy RKR, Phelps GA, Churion K, Picker J, Powell R, Cherian PT, Bowling JJ, Stephan CC, Lee RE, Hurdle JG.	J Biol Chem	10.1016/j.jbc.2024.107839	2024
Metabolism	Construction of a synthetic YdbK-dependent pyruvate:H2 pathway in Escherichia coli BL21(DE3).	Akhtar MK, Jones PR.	Metab Eng	10.1016/j.ymben.2009.01.002	2009
	Biofilm-Based Biocatalysis for Galactooligosaccharides Production by the Surface Display of beta-Galactosidase in Pichia pastoris.	Chen T, Wang S, Niu H, Yang G, Wang S, Wang Y, Zhou C, Yu B, Yang P, Sun W, Liu D, Ying H, Chen Y.	Int J Mol Sci	10.3390/ijms24076507	2023
Metabolism	Characterization of two 2[4Fe4S] ferredoxins from Clostridium acetobutylicum.	Guerrini O, Burlat B, Leger C, Guigliarelli B, Soucaille P, Girbal L.	Curr Microbiol	10.1007/s00284-007-9072-x	2008
	Biosynthesis of Commodity Chemicals From Oil Palm Empty Fruit Bunch Lignin.	Lo TM, Hwang IY, Cho HS, Fedora RE, Chng SH, Choi WJ, Chang MW.	Front Microbiol	10.3389/fmicb.2021.663642	2021
Enzymology	The Contribution of Proton-Donor pKa on Reactivity Profiles of [FeFe]-hydrogenases.	Kisgeropoulos EC, Bharadwaj VS, Mulder DW, King PW.	Front Microbiol	10.3389/fmicb.2022.903951	2022
Enzymology	Increased productivity of Clostridium acetobutylicum fermentation of acetone, butanol, and ethanol by pervaporation through supported ionic liquid membrane.	Izak P, Schwarz K, Ruth W, Bahl H, Kragl U.	Appl Microbiol Biotechnol	10.1007/s00253-008-1354-0	2008
Enzymology	Region-Directed Enzyme Immobilization through Engineering Protein Surface with Histidine Clusters.	Zeballos N, Comino N, Andres-Sanz D, Santiago-Arcos J, Azkargorta M, Elortza F, Diamanti E, Lopez-Gallego F.	ACS Appl Mater Interfaces	10.1021/acsami.3c15993	2024
	Effective continuous acetone-butanol-ethanol production with full utilization of cassava by immobilized symbiotic TSH06.	Lin Z, Liu H, Wu J, Patakova P, Branska B, Zhang J.	Biotechnol Biofuels	10.1186/s13068-019-1561-1	2019
	An Intervention With Michigan-Grown Wheat in Healthy Adult Humans to Determine Effect on Gut Microbiota: Protocol for a Crossover Trial.	Kinney GA, Haddad EN, Garrow LS, Ng PKW, Comstock SS.	JMIR Res Protoc	10.2196/29046	2021
	Greener approach to the comprehensive utilization of algal biomass and oil using novel Clostridial fusants and bio-based solvents.	Fiayaz A, Dahman Y.	Eng Microbiol	10.1016/j.engmic.2022.100068	2023
	Engineering Shewanella oneidensis enables xylose-fed microbial fuel cell.	Li F, Li Y, Sun L, Li X, Yin C, An X, Chen X, Tian Y, Song H.	Biotechnol Biofuels	10.1186/s13068-017-0881-2	2017
	Enhanced n-butanol production by Clostridium beijerinckii MCMB 581 in presence of selected surfactant.	Singh K, Gedam PS, Raut AN, Dhamole PB, Dhakephalkar PK, Ranade DR.	3 Biotech	10.1007/s13205-017-0803-9	2017
	The quest for a functional substrate access tunnel in FeFe hydrogenase.	Lautier T, Ezanno P, Baffert C, Fourmond V, Cournac L, Fontecilla-Camps JC, Soucaille P, Bertrand P, Meynial-Salles I, Leger C.	Faraday Discuss	10.1039/c004099c	2011
	Structural idiosyncrasies of glycyl T-box riboswitches among pathogenic bacteria.	Giarimoglou N, Kouvela A, Zhang J, Stamatopoulou V, Stathopoulos C.	RNA	10.1261/rna.080071.124	2024
Metabolism	Kinetic Study of Acetone-Butanol-Ethanol Fermentation in Continuous Culture.	Buehler EA, Mesbah A.	PLoS One	10.1371/journal.pone.0158243	2016
	Microbial containment device: A platform for comprehensive analysis of microbial metabolism without sample preparation.	Mohammadi M, Bishop SL, Aburashed R, Luqman S, Groves RA, Bihan DG, Rydzak T, Lewis IA.	Front Microbiol	10.3389/fmicb.2022.958785	2022
	Making the connections: physical and electric interactions in biohybrid photosynthetic systems.	Yang Y, Liu LN, Tian H, Cooper AI, Sprick RS.	Energy Environ Sci	10.1039/d3ee01265d	2023
Metabolism	Biobutanol: an attractive biofuel.	Durre P.	Biotechnol J	10.1002/biot.200700168	2007
	Marine Fungi Select and Transport Aerobic and Anaerobic Bacterial Populations from Polycyclic Aromatic Hydrocarbon-Contaminated Sediments.	Alvarez-Barragan J, Cravo-Laureau C, Xiong B, Wick LY, Duran R.	mBio	10.1128/mbio.02761-22	2023
	Characterization of the Tellurite-Resistance Properties and Identification of the Core Function Genes for Tellurite Resistance in Pseudomonas citronellolis SJTE-3.	Peng W, Wang Y, Fu Y, Deng Z, Lin S, Liang R.	Microorganisms	10.3390/microorganisms10010095	2022
Enzymology	Structural and Biochemical Analyses of the Butanol Dehydrogenase from Fusobacterium nucleatum.	Bai X, Lan J, He S, Bu T, Zhang J, Wang L, Jin X, Mao Y, Guan W, Zhang L, Lu M, Piao H, Jo I, Quan C, Nam KH, Xu Y.	Int J Mol Sci	10.3390/ijms24032994	2023
Enzymology	Cytochrome P450 monooxygenase from Clostridium acetobutylicum: a new alpha-fatty acid hydroxylase.	Girhard M, Schuster S, Dietrich M, Durre P, Urlacher VB.	Biochem Biophys Res Commun	10.1016/j.bbrc.2007.07.155	2007
Enzymology	An O2-inducible rubrerythrin-like protein, rubperoxin, is functional as a H2O2 reductase in an obligatory anaerobe Clostridium acetobutylicum.	Kawasaki S, Ono M, Watamura Y, Sakai Y, Satoh T, Arai T, Satoh J, Niimura Y.	FEBS Lett	10.1016/j.febslet.2007.04.050	2007
Genetics	In Vivo Genome Editing in Type I and II Methanotrophs Using a CRISPR/Cas9 System.	Rumah BL, Claxton Stevens BH, Yeboah JE, Stead CE, Harding EL, Minton NP, Zhang Y.	ACS Synth Biol	10.1021/acssynbio.2c00554	2023
Genetics	Rapid Bacterial Species Delineation Based on Parameters Derived From Genome Numerical Representations.	Maderankova D, Jugas R, Sedlar K, Vitek M, Skutkova H.	Comput Struct Biotechnol J	10.1016/j.csbj.2018.12.006	2019
Metabolism	Development of a High-Throughput, In Vivo Selection Platform for NADPH-Dependent Reactions Based on Redox Balance Principles.	Zhang L, King E, Luo R, Li H.	ACS Synth Biol	10.1021/acssynbio.8b00179	2018
	Transcript Profiling of Nitroxoline-Treated Biofilms Shows Rapid Up-regulation of Iron Acquisition Gene Clusters.	Liu K, Abouelhassan Y, Zhang Y, Jin S, Huigens Iii RW.	ACS Infect Dis	10.1021/acsinfecdis.2c00206	2022
	ClosTron-mediated engineering of Clostridium.	Kuehne SA, Heap JT, Cooksley CM, Cartman ST, Minton NP.	Methods Mol Biol	10.1007/978-1-61779-197-0_23	2011
Enzymology	HydF as a scaffold protein in [FeFe] hydrogenase H-cluster biosynthesis.	McGlynn SE, Shepard EM, Winslow MA, Naumov AV, Duschene KS, Posewitz MC, Broderick WE, Broderick JB, Peters JW.	FEBS Lett	10.1016/j.febslet.2008.04.063	2008
Metabolism	Electrooptical measurements for monitoring metabolite fluxes in acetone-butanol-ethanol fermentations.	Junne S, Klein E, Angersbach A, Goetz P.	Biotechnol Bioeng	10.1002/bit.21639	2008
	Agricultural residues and energy crops as potentially economical and novel substrates for microbial production of butanol (a biofuel)	Qureshi N.	CAB reviews: perspectives in agriculture, veterinary science, nutrition and natural resources.		2010
Genetics	Identifying gene clusters within localized regions in multiple genomes.	Yang Q, Yi G, Zhang F, Thon MR, Sze SH.	J Comput Biol	10.1089/cmb.2009.0116	2010
Enzymology	A new dehydrogenase from Clostridium acetobutylicum for asymmetric synthesis: dynamic reductive kinetic resolution entry into the Taxotère side chain.	Applegate GA, Cheloha RW, Nelson DL, Berkowitz DB.	Chem Commun (Camb)	10.1039/c0cc04585c	2011
Metabolism	[Engineering and metabolic characteristics of a Clostridium tyrobutyricum strain].	Yang G, Liu G, Yang C.	Sheng Wu Gong Cheng Xue Bao		2010
	Gut microbiota-derived synbiotic formula (SIM01) as a novel adjuvant therapy for COVID-19: An open-label pilot study.	Zhang L, Xu Z, Mak JWY, Chow KM, Lui G, Li TCM, Wong CK, Chan PKS, Ching JYL, Fujiwara Y, Chan FKL, Ng SC.	J Gastroenterol Hepatol	10.1111/jgh.15796	2022
Metabolism	Structure-Function Analysis of the Phosphoesterase Component of the Nucleic Acid End-Healing Enzyme Runella slithyformis HD-Pnk.	Munir A, Shuman S.	J Bacteriol	10.1128/jb.00292-19	2019
	Production of ethanol from Jerusalem artichoke by mycelial pellets.	Zhang C, Wu D, Yang H, Ren H.	Sci Rep	10.1038/s41598-019-55117-7	2019
	[FeFe]-hydrogenase-catalyzed H2 production in a photoelectrochemical biofuel cell.	Hambourger M, Gervaldo M, Svedruzic D, King PW, Gust D, Ghirardi M, Moore AL, Moore TA.	J Am Chem Soc	10.1021/ja077691k	2008
Enzymology	Novel substrate specificity of glutathione synthesis enzymes from Streptococcus agalactiae and Clostridium acetobutylicum.	Kino K, Kuratsu S, Noguchi A, Kokubo M, Nakazawa Y, Arai T, Yagasaki M, Kirimura K.	Biochem Biophys Res Commun	10.1016/j.bbrc.2006.11.016	2007
Enzymology	X-ray structure of the [FeFe]-hydrogenase maturase HydE from Thermotoga maritima.	Nicolet Y, Rubach JK, Posewitz MC, Amara P, Mathevon C, Atta M, Fontecave M, Fontecilla-Camps JC.	J Biol Chem	10.1074/jbc.m801161200	2008
Genetics	First Report and Comparative Genomic Analysis of Mycoplasma capricolum subsp. capricolum HN-B in Hainan Island, China.	Zhang Z, He M, Jiang J, Li X, Li H, Zhang W, Chen S, Du L, Man C, Chen Q, Gao H, Wang F.	Microorganisms	10.3390/microorganisms10112298	2022
	Broad Chain-Length Specificity of the Alkane-Forming Enzymes NoCER1A and NoCER3A/B in Nymphaea odorata.	Kojima H, Yamamoto K, Suzuki T, Hayakawa Y, Niwa T, Tokuhiro K, Katahira S, Higashiyama T, Ishiguro S.	Plant Cell Physiol	10.1093/pcp/pcad168	2024
	Characterization of the posttranscriptional modifications in Legionella pneumophila small-subunit ribosomal RNA.	Emmerechts G, Maes L, Herdewijn P, Anne J, Rozenski J.	Chem Biodivers	10.1002/cbdv.200890218	2008
Metabolism	Characterization of the cellulolytic and hydrogen-producing activities of six mesophilic Clostridium species.	Ren Z, Ren Z, Ward TE, Logan BE, Regan JM.	J Appl Microbiol	10.1111/j.1365-2672.2007.03477.x	2007
	Deriving and Using Descriptors of Elementary Functions in Rational Protein Design.	Yin M, Goncearenco A, Berezovsky IN.	Front Bioinform	10.3389/fbinf.2021.657529	2021
Pathogenicity	HicA Toxin-Based Counterselection Marker for Allelic Exchange Mutations in Fusobacterium nucleatum.	Gc B, Zhou P, Wu C.	Appl Environ Microbiol	10.1128/aem.00091-23	2023
	A Gold Standard, CRISPR/Cas9-Based Complementation Strategy Reliant on 24 Nucleotide Bookmark Sequences.	Seys FM, Rowe P, Bolt EL, Humphreys CM, Minton NP.	Genes (Basel)	10.3390/genes11040458	2020
Phylogeny	A Novel Inovirus Reprograms Metabolism and Motility of Marine Alteromonas.	Jia K, Peng Y, Chen X, Jian H, Jin M, Yi Z, Su M, Dong X, Yi M.	Microbiol Spectr	10.1128/spectrum.03388-22	2022
Metabolism	Metabolic pathways of clostridia for producing butanol.	Gheshlaghi R, Scharer JM, Moo-Young M, Chou CP.	Biotechnol Adv	10.1016/j.biotechadv.2009.06.002	2009
	In silico gene knockout prediction using a hybrid of Bat algorithm and minimization of metabolic adjustment.	Man MY, Mohamad MS, Choon YW, Ismail MA.	J Integr Bioinform	10.1515/jib-2020-0037	2021
	Pretreatment and Conversion of Distiller's Dried Grains with Solubles for Acetone- Butanol-Ethanol (ABE) Production	Wang B, Ezeji T, Shi Z, Feng H, Blaschek HP.	Transactions of the ASABE.		2009
	The Cryptic Nature of Fe-S Clusters: A Case Study of the Hepatitis B HBx Oncoprotein.	Quist T, Chen J, MacNeil A, Pandelia ME.	Inorganics (Basel)	10.3390/inorganics11120475	2023
	Phages Shape Microbial Dynamics and Metabolism of a Model Community Mimicking Cider, a Fermented Beverage.	Ledormand P, Desmasures N, Schlusselhuber M, Sesboue A, Ledauphin J, Dalmasso M.	Viruses	10.3390/v14102283	2022
	Riboswitch regulation in cyanobacteria is independent of their habitat adaptations.	Singh P, Kumar N, Jethva M, Yadav S, Kumari P, Thakur A, Kushwaha HR.	Physiol Mol Biol Plants	10.1007/s12298-018-0504-9	2018
	The rubrerythrin-like protein Hsp21 of Clostridium acetobutylicum is a general stress protein.	Hillmann F, Fischer RJ, Bahl H.	Arch Microbiol	10.1007/s00203-006-0091-y	2006
	Inhibition of [FeFe]-hydrogenase by formaldehyde: proposed mechanism and reactivity of FeFe alkyl complexes.	Zhang F, Woods TJ, Zhu L, Rauchfuss TB.	Chem Sci	10.1039/d1sc05803g	2021
Enzymology	On the diversity of F₄₂₀ -dependent oxidoreductases: A sequence- and structure-based classification.	Mascotti ML, Juri Ayub M, Fraaije MW.	Proteins	10.1002/prot.26170	2021
Enzymology	Structure of the Bacillus anthracis dTDP-L-rhamnose-biosynthetic enzyme dTDP-4-dehydrorhamnose reductase (RfbD).	Law A, Stergioulis A, Halavaty AS, Minasov G, Anderson WF, Kuhn ML.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x17015746	2017
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Metabolism	Growth-coupled bioconversion of levulinic acid to butanone.	Mehrer CR, Rand JM, Incha MR, Cook TB, Demir B, Motagamwala AH, Kim D, Dumesic JA, Pfleger BF.	Metab Eng	10.1016/j.ymben.2019.06.003	2019
Metabolism	Post-transcriptional control of bacterial nitrogen metabolism by regulatory noncoding RNAs.	Han Y, Li C, Yan Y, Lin M, Ke X, Zhang Y, Zhan Y.	World J Microbiol Biotechnol	10.1007/s11274-022-03287-4	2022
Metabolism	Butanol production under microaerobic conditions with a symbiotic system of Clostridium acetobutylicum and Bacillus cereus.	Wu P, Wang G, Wang G, Borresen BT, Liu H, Zhang J.	Microb Cell Fact	10.1186/s12934-016-0412-z	2016
Genetics	Characterization of a highly xylose tolerant beta-xylosidase isolated from high temperature horse manure compost.	Ndata K, Nevondo W, Cekuse B, van Zyl LJ, Trindade M.	BMC Biotechnol	10.1186/s12896-021-00722-6	2021
Metabolism	Butanol production from corn fiber xylan using Clostridium acetobutylicum.	Qureshi N, Li XL, Hughes S, Saha BC, Cotta MA.	Biotechnol Prog	10.1021/bp050360w	2006
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Enzymology	Crystallization and preliminary X-ray analysis of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum.	Nishikawa K, Shomura Y, Kawasaki S, Niimura Y, Higuchi Y.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309109047162	2010
Metabolism	Electrochemical kinetic investigations of the reactions of [FeFe]-hydrogenases with carbon monoxide and oxygen: comparing the importance of gas tunnels and active-site electronic/redox effects.	Goldet G, Brandmayr C, Stripp ST, Happe T, Cavazza C, Fontecilla-Camps JC, Armstrong FA.	J Am Chem Soc	10.1021/ja905388j	2009
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Metabolism	Peptidoglycan-type analysis of the N-acetylmuramic acid auxotrophic oral pathogen Tannerella forsythia and reclassification of the peptidoglycan-type of Porphyromonas gingivalis.	Mayer VMT, Hottmann I, Figl R, Altmann F, Mayer C, Schaffer C.	BMC Microbiol	10.1186/s12866-019-1575-7	2019
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Metabolism	Metabolic engineering of Clostridium acetobutylicum for the industrial production of 1,3-propanediol from glycerol.	Gonzalez-Pajuelo M, Meynial-Salles I, Mendes F, Andrade JC, Vasconcelos I, Soucaille P.	Metab Eng	10.1016/j.ymben.2005.06.001	2005
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Enzymology	Physiological role and complex regulation of O₂-reducing enzymes in the obligate anaerobe Clostridioides difficile.	Caulat LC, Lotoux A, Martins MC, Kint N, Anjou C, Teixeira M, Folgosa F, Morvan C, Martin-Verstraete I.	mBio	10.1128/mbio.01591-24	2024
Metabolism	Exploring functionality of the reverse beta-oxidation pathway in Corynebacterium glutamicum for production of adipic acid.	Shin JH, Andersen AJC, Achterberg P, Olsson L.	Microb Cell Fact	10.1186/s12934-021-01647-7	2021
Metabolism	Effect of fed-batch and chemostat cultivation processes of C. glutamicum CP for L-leucine production.	Zhang Y, Xiong H, Chen Z, Fu Y, Xu Q, Chen N.	Bioengineered	10.1080/21655979.2021.1874693	2021
Metabolism	Non-Specific GH30_7 Endo-beta-1,4-xylanase from Talaromyces leycettanus.	Suchova K, Spodsberg N, Morkeberg Krogh KBR, Biely P, Puchart V.	Molecules	10.3390/molecules26154614	2021
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Genetics	Dual genetic level modification engineering accelerate genome evolution of Corynebacterium glutamicum.	Wang Q, Zhang J, Zhao Z, Li Y, You J, Wang Y, Li X, Xu M, Rao Z.	Nucleic Acids Res	10.1093/nar/gkae577	2024
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Enzymology	Toward a synthetic hydrogen sensor in cyanobacteria: Functional production of an oxygen-tolerant regulatory hydrogenase in Synechocystis sp. PCC 6803.	Opel F, Itzenhauser MA, Wehner I, Lupacchini S, Lauterbach L, Lenz O, Klahn S.	Front Microbiol	10.3389/fmicb.2023.1122078	2023
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	One-year supplementation with Lactobacillus reuteri ATCC PTA 6475 counteracts a degradation of gut microbiota in older women with low bone mineral density.	Li P, Ji B, Luo H, Sundh D, Lorentzon M, Nielsen J.	NPJ Biofilms Microbiomes	10.1038/s41522-022-00348-2	2022
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Genetics	A Computational Framework to Identify Metabolic Engineering Strategies for the Co-Production of Metabolites.	Raajaraam L, Raman K.	Front Bioeng Biotechnol	10.3389/fbioe.2021.779405	2021
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	Fermented Rapeseed Meal as a Component of the Mink Diet (Neovison vison) Modulating the Gastrointestinal Tract Microbiota.	Wlazlo L, Nowakowicz-Debek B, Czech A, Chmielowiec-Korzeniowska A, Ossowski M, Kulazynski M, Lukaszewicz M, Krasowska A.	Animals (Basel)	10.3390/ani11051337	2021
	Efficient Biofilm-Based Fermentation Strategies by eDNA Formation for l-Proline Production with Corynebacterium glutamicum.	Ren P, Chen T, Liu N, Sun W, Hu G, Yu Y, Yu B, Ouyang P, Liu D, Chen Y.	ACS Omega	10.1021/acsomega.0c05095	2020
Metabolism	Continuous production of butanol by Clostridium acetobutylicum immobilized in a fibrous bed bioreactor.	Huang WC, Ramey DE, Yang ST.	Appl Biochem Biotechnol	10.1385/abab:115:1-3:0887	2004
Stress	Factors affecting the rapid changes of protein under short-term heat stress.	Wu B, Qiao J, Wang X, Liu M, Xu S, Sun D.	BMC Genomics	10.1186/s12864-021-07560-y	2021
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	Increasing of activity and thermostability of cold active butanol-tolerant endoglucanase from a marine Rhodococcus sp. under high concentrations of butanol condition.	Zeng X, Xue D.	3 Biotech	10.1007/s13205-018-1249-4	2018
Metabolism	Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster.	Tao L, Pattenaude SA, Joshi S, Begley TP, Rauchfuss TB, Britt RD.	J Am Chem Soc	10.1021/jacs.0c03802	2020
Metabolism	Combining a Clostridial enzyme exhibiting unusual active site plasticity with a remarkably facile sigmatropic rearrangement: rapid, stereocontrolled entry into densely functionalized fluorinated phosphonates for chemical biology.	Panigrahi K, Applegate GA, Malik G, Berkowitz DB.	J Am Chem Soc	10.1021/jacs.5b00022	2015
Phylogeny	Subgingival Microbiota and Cytokines Profile Changes in Patients with Periodontitis: A Pilot Study Comparing Healthy and Diseased Sites in the Same Oral Cavities.	Esparbes P, Legrand A, Bandiaky ON, Cheraud-Carpentier M, Martin H, Montassier E, Soueidan A.	Microorganisms	10.3390/microorganisms9112364	2021
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Metabolism	Haemonchus contortus Infection Alters Gastrointestinal Microbial Community Composition, Protein Digestion and Amino Acid Allocations in Lambs.	Xiang H, Fang Y, Tan Z, Zhong R.	Front Microbiol	10.3389/fmicb.2021.797746	2021
	Self-sufficient asymmetric reduction of beta-ketoesters catalysed by a novel and robust thermophilic alcohol dehydrogenase co-immobilised with NADH.	Orrego AH, Andres-Sanz D, Velasco-Lozano S, Sanchez-Costa M, Berenguer J, Guisan JM, Rocha-Martin J, Lopez-Gallego F.	Catal Sci Technol	10.1039/d1cy00268f	2021
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Metabolism	Adaptability of a Caproate-Producing Bacterium Contributes to Its Dominance in an Anaerobic Fermentation System.	Wang H, Gu Y, Zhou W, Zhao D, Qiao Z, Zheng J, Gao J, Chen X, Ren C, Xu Y.	Appl Environ Microbiol	10.1128/aem.01203-21	2021
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Metabolism	Identification of Bacterial Species That Can Utilize Fructose-Asparagine.	Sabag-Daigle A, Wu J, Borton MA, Sengupta A, Gopalan V, Wrighton KC, Wysocki VH, Ahmer BMM.	Appl Environ Microbiol	10.1128/aem.01957-17	2018
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Metabolism	Pectinolytic Bacterial Consortia Reduce Jute Retting Period and Improve Fibre Quality.	Hasan R, Aktar N, Kabir SMT, Honi U, Halim A, Islam R, Sarker MDH, Haque MS, Alam MM, Islam MS.	Sci Rep	10.1038/s41598-020-61898-z	2020
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Metabolism	Sequences affecting the regulation of solvent production in Clostridium acetobutylicum.	Scotcher MC, Huang KX, Harrison ML, Rudolph FB, Bennett GN.	J Ind Microbiol Biotechnol	10.1007/s10295-003-0057-x	2003
Metabolism	Quantitative proteomic analysis to reveal expression differences for butanol production from glycerol and glucose by Clostridium sp. strain CT7.	Jiang Y, Wu R, Lu J, Dong W, Zhou J, Zhang W, Xin F, Jiang M.	Microb Cell Fact	10.1186/s12934-021-01508-3	2021
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	Quantitative proteomic analysis reveals the ethanologenic metabolism regulation of Ethanoligenens harbinense by exogenous ethanol addition.	Li H, Mei X, Liu B, Xie G, Ren N, Xing D.	Biotechnol Biofuels	10.1186/s13068-019-1511-y	2019
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Pathogenicity	Antimicrobial activity of different proteins and their fragments from Bacillus thuringiensis parasporal crystals against clostridia and archaea.	Yudina TG, Brioukhanov AL, Zalunin IA, Revina LP, Shestakov AI, Voyushina NE, Chestukhina GG, Netrusov AI.	Anaerobe	10.1016/j.anaerobe.2006.09.006	2007
Metabolism	Heterologous expression of the Saccharomyces cerevisiae alcohol acetyltransferase genes in Clostridium acetobutylicum and Escherichia coli for the production of isoamyl acetate.	Horton CE, Huang KX, Bennett GN, Rudolph FB.	J Ind Microbiol Biotechnol	10.1007/s10295-003-0070-0	2003
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Enzymology	Functional and Structural Characterization of Diverse NfsB Chloramphenicol Reductase Enzymes from Human Pathogens.	Mullowney MW, Maltseva NI, Endres M, Kim Y, Joachimiak A, Crofts TS.	Microbiol Spectr	10.1128/spectrum.00139-22	2022
	Transcriptome profile of carbon catabolite repression in an efficient l-(+)-lactic acid-producing bacterium Enterococcus mundtii QU25 grown in media with combinations of cellobiose, xylose, and glucose.	Shiwa Y, Fujiwara H, Numaguchi M, Abdel-Rahman MA, Nabeta K, Kanesaki Y, Tashiro Y, Zendo T, Tanaka N, Fujita N, Yoshikawa H, Sonomoto K, Shimizu-Kadota M.	PLoS One	10.1371/journal.pone.0242070	2020
Metabolism	Enzyme-Primed Native Chemical Ligation Produces Autoinducing Cyclopeptides in Clostridia.	Molloy EM, Dell M, Hansch VG, Dunbar KL, Feldmann R, Oberheide A, Seyfarth L, Kumpfmuller J, Horch T, Arndt HD, Hertweck C.	Angew Chem Int Ed Engl	10.1002/anie.202016378	2021
Metabolism	Identification of a Novel N-Acetylmuramic Acid Transporter in Tannerella forsythia.	Ruscitto A, Hottmann I, Stafford GP, Schaffer C, Mayer C, Sharma A.	J Bacteriol	10.1128/jb.00473-16	2016
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Metabolism	The Serine Biosynthesis of Paenibacillus polymyxa WLY78 Is Regulated by the T-Box Riboswitch.	Zhang H, Li Q, Li Y, Chen S.	Int J Mol Sci	10.3390/ijms22063033	2021
Enzymology	Enhancing fluxes through the mevalonate pathway in Saccharomyces cerevisiae by engineering the HMGR and beta-alanine metabolism.	Lu S, Zhou C, Guo X, Du Z, Cheng Y, Wang Z, He X.	Microb Biotechnol	10.1111/1751-7915.14072	2022
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Metabolism	Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli.	Caveney NA, Caballero G, Voedts H, Niciforovic A, Worrall LJ, Vuckovic M, Fonvielle M, Hugonnet JE, Arthur M, Strynadka NCJ.	Nat Commun	10.1038/s41467-019-09507-0	2019
Metabolism	Instigation of indigenous thermophilic bacterial consortia for enhanced oil recovery from high temperature oil reservoirs.	Sharma N, Lavania M, Kukreti V, Lal B.	PLoS One	10.1371/journal.pone.0229889	2020
Metabolism	Expression, purification, and characterization of recombinant nonphosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum.	Iddar A, Valverde F, Serrano A, Soukri A.	Protein Expr Purif	10.1016/s1046-5928(02)00032-3	2002
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Metabolism	Cauliflower waste utilization for sustainable biobutanol production: revelation of drying kinetics and bioprocess development.	Khedkar MA, Nimbalkar PR, Chavan PV, Chendake YJ, Bankar SB.	Bioprocess Biosyst Eng	10.1007/s00449-017-1806-y	2017
Phylogeny	Quantitative fluorescence in situ hybridization analysis of microbial consortia from a biogenic gas field in Alaska's Cook Inlet basin.	Dawson KS, Strapoc D, Huizinga B, Lidstrom U, Ashby M, Macalady JL.	Appl Environ Microbiol	10.1128/aem.07122-11	2012
Biotechnology	Advance of tolerance engineering on microbes for industrial production.	Gao S, Liao Y, He H, Yang H, Yang X, Xu S, Wang X, Chen K, Ouyang P.	Synth Syst Biotechnol	10.1016/j.synbio.2023.10.004	2023
	Strongyloides stercoralis infection reduces Fusicatenibacter and Anaerostipes in the gut and increases bacterial amino-acid metabolism in early-stage chronic kidney disease.	Tran NTD, Chaidee A, Surapinit A, Yingklang M, Roytrakul S, Charoenlappanit S, Pinlaor P, Hongsrichan N, Nguyen Thi H, Anutrakulchai S, Cha'on U, Pinlaor S.	Heliyon	10.1016/j.heliyon.2023.e19859	2023
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Metabolism	Draft genome sequence of butanol-acetone-producing Clostridium beijerinckii strain G117.	Wu YR, Li Y, Yang KL, He J.	J Bacteriol	10.1128/jb.01139-12	2012
	Genome Sequence of the Butanol Hyperproducer Clostridium saccharoperbutylacetonicum N1-4.	Del Cerro C, Felpeto-Santero C, Rojas A, Tortajada M, Ramon D, Garcia JL.	Genome Announc	10.1128/genomea.00070-13	2013
Metabolism	Modulation of the Acetone/Butanol Ratio during Fermentation of Corn Stover-Derived Hydrolysate by Clostridium beijerinckii Strain NCIMB 8052.	Liu ZY, Yao XQ, Zhang Q, Liu Z, Wang ZJ, Zhang YY, Li FL.	Appl Environ Microbiol	10.1128/aem.03386-16	2017
	Complete Genome Sequence of Clostridium sp. Strain DL-VIII, a Novel Solventogenic Clostridium Species Isolated from Anaerobic Sludge.	Taghavi S, Izquierdo JA, van der Lelie D.	Genome Announc	10.1128/genomea.00605-13	2013
Metabolism	Control of solvent production by sigma-54 factor and the transcriptional activator AdhR in Clostridium beijerinckii.	Yang B, Nie X, Gu Y, Jiang W, Yang C.	Microb Biotechnol	10.1111/1751-7915.13505	2020
Metabolism	Chromosomal integration of aldo-keto-reductase and short-chain dehydrogenase/reductase genes in Clostridium beijerinckii NCIMB 8052 enhanced tolerance to lignocellulose-derived microbial inhibitory compounds.	Okonkwo CC, Ujor V, Ezeji TC.	Sci Rep	10.1038/s41598-019-44061-1	2019
Metabolism	Ferrous-Iron-Activated Transcriptional Factor AdhR Regulates Redox Homeostasis in Clostridium beijerinckii.	Yang B, Nie X, Xiao Y, Gu Y, Jiang W, Yang C.	Appl Environ Microbiol	10.1128/aem.02782-19	2020
Metabolism	Molecular characterization of an NADPH-dependent acetoin reductase/2,3-butanediol dehydrogenase from Clostridium beijerinckii NCIMB 8052.	Raedts J, Siemerink MA, Levisson M, van der Oost J, Kengen SW.	Appl Environ Microbiol	10.1128/aem.04007-13	2014
Metabolism	Use of proteomic analysis to elucidate the role of calcium in acetone-butanol-ethanol fermentation by Clostridium beijerinckii NCIMB 8052.	Han B, Ujor V, Lai LB, Gopalan V, Ezeji TC.	Appl Environ Microbiol	10.1128/aem.02969-12	2013
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Metabolism	Evidence for the presence of an alternative glucose transport system in Clostridium beijerinckii NCIMB 8052 and the solvent-hyperproducing mutant BA101.	Lee J, Mitchell WJ, Tangney M, Blaschek HP.	Appl Environ Microbiol	10.1128/aem.71.6.3384-3387.2005	2005
Metabolism	l-Rhamnose Metabolism in Clostridium beijerinckii Strain DSM 6423.	Diallo M, Simons AD, van der Wal H, Collas F, Houweling-Tan B, Kengen SWM, Lopez-Contreras AM.	Appl Environ Microbiol	10.1128/aem.02656-18	2019
Metabolism	Inactivation of the Levansucrase Gene in Paenibacillus polymyxa DSM 365 Diminishes Exopolysaccharide Biosynthesis during 2,3-Butanediol Fermentation.	Okonkwo CC, Ujor V, Cornish K, Ezeji TC.	Appl Environ Microbiol	10.1128/aem.00196-20	2020
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Phylogeny	First isolation of Clostridium amygdalinum from a patient with chronic osteitis.	Carlier JP, Manich M, Loiez C, Migaud H, Courcol RJ.	J Clin Microbiol	10.1128/jcm.01200-06	2006
Metabolism	Dual substrate specificity of an N-acetylglucosamine phosphotransferase system in Clostridium beijerinckii.	Al Makishah NH, Mitchell WJ.	Appl Environ Microbiol	10.1128/aem.01866-13	2013
Enzymology	Genomic sequence of bacteriophage ATCC 8074-B1 and activity of its endolysin and engineered variants against Clostridium sporogenes.	Mayer MJ, Gasson MJ, Narbad A.	Appl Environ Microbiol	10.1128/aem.07884-11	2012
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Enzymology	Clostridium beijerinckii and Clostridium difficile detoxify methylglyoxal by a novel mechanism involving glycerol dehydrogenase.	Liyanage H, Kashket S, Young M, Kashket ER.	Appl Environ Microbiol	10.1128/aem.67.5.2004-2010.2001	2001
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Metabolism	Genomic sequence and characterization of the virulent bacteriophage phiCTP1 from Clostridium tyrobutyricum and heterologous expression of its endolysin.	Mayer MJ, Payne J, Gasson MJ, Narbad A.	Appl Environ Microbiol	10.1128/aem.00989-10	2010
Metabolism	A gene system for glucitol transport and metabolism in Clostridium beijerinckii NCIMB 8052.	Tangney M, Brehm JK, Minton NP, Mitchell WJ.	Appl Environ Microbiol	10.1128/aem.64.5.1612-1619.1998	1998
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Genetics	Dark matter in a deep-sea vent and in human mouth.	Galperin MY.	Environ Microbiol	10.1111/j.1462-2920.2007.01434.x	2007
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	Effective isopropanol-butanol (IB) fermentation with high butanol content using a newly isolated Clostridium sp. A1424.	Youn SH, Lee KM, Kim KY, Lee SM, Woo HM, Um Y.	Biotechnol Biofuels	10.1186/s13068-016-0650-7	2016
	ISCce1 and ISCce2, two novel insertion sequences in Clostridium cellulolyticum.	Maamar H, de Philip P, Belaich JP, Tardif C.	J Bacteriol	10.1128/jb.185.3.714-725.2003	2003
Metabolism	A metabolic pathway leading to mannosylfructose biosynthesis in Agrobacterium tumefaciens uncovers a family of mannosyltransferases.	Torres LL, Salerno GL.	Proc Natl Acad Sci U S A	10.1073/pnas.0706709104	2007
Enzymology	Properties of the glucose phosphotransferase system of Clostridium acetobutylicum NCIB 8052.	Mitchell WJ, Shaw JE, Andrews L.	Appl Environ Microbiol	10.1128/aem.57.9.2534-2539.1991	1991
Metabolism	Expression and delivery of an endolysin to combat Clostridium perfringens.	Gervasi T, Horn N, Wegmann U, Dugo G, Narbad A, Mayer MJ.	Appl Microbiol Biotechnol	10.1007/s00253-013-5128-y	2014
Metabolism	Genetic diversity of hydrogen-producing bacteria in an acidophilic ethanol-H2-coproducing system, analyzed using the [Fe]-hydrogenase gene.	Xing D, Ren N, Rittmann BE.	Appl Environ Microbiol	10.1128/aem.01946-07	2008
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	Engineering of bespoke photosensitiser-microbe interfaces for enhanced semi-artificial photosynthesis.	Bishara Robertson IL, Zhang H, Reisner E, Butt JN, Jeuken LJC.	Chem Sci	10.1039/d4sc00864b	2024
Metabolism	Genome-Wide TSS Distribution in Three Related Clostridia with Normalized Capp-Switch Sequencing.	Hocq R, Jagtap S, Boutard M, Tolonen AC, Duval L, Pirayre A, Lopes Ferreira N, Wasels F	Microbiol Spectr	10.1128/spectrum.02288-21	2022
Biotechnology	Biodeinking of waste papers using combinatorial fungal enzymes and subsequent production of butanol from effluent.	Mondal S, Biswal D, Pal K, Rakshit S, Kumar Halder S, Mandavgane SA, Bera D, Hossain M, Chandra Mondal K	Bioresour Technol	10.1016/j.biortech.2022.127078	2022
	Clostridium acetobutylicum atpG-Knockdown Mutants Increase Extracellular pH in Batch Cultures.	Jang YS, Seong HJ, Kwon SW, Lee YS, Im JA, Lee HL, Yoon YR, Lee SY	Front Bioeng Biotechnol	10.3389/fbioe.2021.754250	2021
Biotechnology	Saccharification of lignocellulosic biomass using an enzymatic cocktail of fungal origin and successive production of butanol by Clostridium acetobutylicum.	Mondal S, Santra S, Rakshit S, Kumar Halder S, Hossain M, Chandra Mondal K	Bioresour Technol	10.1016/j.biortech.2021.126093	2021
Stress	Response characteristics of the membrane integrity and physiological activities of the mutant strain Y217 under exogenous butanol stress.	Gao Y, Zhou X, Zhang MM, Liu YJ, Guo XP, Lei CR, Li WJ, Lu D	Appl Microbiol Biotechnol	10.1007/s00253-021-11174-5	2021
	Co-feeding glucose with either gluconate or galacturonate during clostridial fermentations provides metabolic fine-tuning capabilities.	Zu TNK, Liu S, Gerlach ES, Mojadedi W, Sund CJ	Sci Rep	10.1038/s41598-020-76761-4	2021
Biotechnology	Effects of Carbon Ion Beam Irradiation on Butanol Tolerance and Production of Clostridium acetobutylicum.	Gao Y, Zhang M, Zhou X, Guo X, Lei C, Li W, Lu D	Front Microbiol	10.3389/fmicb.2020.602774	2020
	Transcriptomic and Phenotypic Analysis of a spoIIE Mutant in Clostridium beijerinckii.	Diallo M, Kint N, Monot M, Collas F, Martin-Verstraete I, van der Oost J, Kengen SWM, Lopez-Contreras AM	Front Microbiol	10.3389/fmicb.2020.556064	2020
Metabolism	Genetic sensor-regulators functional in Clostridia.	Han S, Kim Y, Karanjikar M, San KY, Bennett GN	J Ind Microbiol Biotechnol	10.1007/s10295-020-02303-6	2020
Enzymology	A CRISPR/Anti-CRISPR Genome Editing Approach Underlines the Synergy of Butanol Dehydrogenases in Clostridium acetobutylicum DSM 792.	Wasels F, Chartier G, Hocq R, Lopes Ferreira N	Appl Environ Microbiol	10.1128/AEM.00408-20	2020
Metabolism	RRNPP-type quorum sensing affects solvent formation and sporulation in Clostridium acetobutylicum.	Kotte AK, Severn O, Bean Z, Schwarz K, Minton NP, Winzer K	Microbiology (Reading)	10.1099/mic.0.000916	2020
Metabolism	Combined evolutionary engineering and genetic manipulation improve low pH tolerance and butanol production in a synthetic microbial Clostridium community.	Wen Z, Ledesma-Amaro R, Lu M, Jiang Y, Gao S, Jin M, Yang S	Biotechnol Bioeng	10.1002/bit.27333	2020
Metabolism	Butyric acid production from spent coffee grounds by engineered Clostridium tyrobutyricum overexpressing galactose catabolism genes.	He F, Qin S, Yang Z, Bai X, Suo Y, Wang J	Bioresour Technol	10.1016/j.biortech.2020.122977	2020
Metabolism	Metabolic Engineering of Clostridium cellulovorans to Improve Butanol Production by Consolidated Bioprocessing.	Wen Z, Ledesma-Amaro R, Lu M, Jin M, Yang S	ACS Synth Biol	10.1021/acssynbio.9b00331	2020
Biotechnology	Efficient bio-butanol production from lignocellulosic waste by elucidating the mechanisms of Clostridium acetobutylicum response to phenolic inhibitors.	Luo H, Zheng P, Bilal M, Xie F, Zeng Q, Zhu C, Yang R, Wang Z	Sci Total Environ	10.1016/j.scitotenv.2019.136399	2019
Metabolism	Biochemical characterization of an esterase from Clostridium acetobutylicum with novel GYSMG pentapeptide motif at the catalytic domain.	Nagaroor V, Gummadi SN	J Ind Microbiol Biotechnol	10.1007/s10295-019-02253-8	2019
	The significance of aspartate on NAD(H) biosynthesis and ABE fermentation in Clostridium acetobutylicum ATCC 824.	Liao Z, Yang X, Fu H, Wang J	AMB Express	10.1186/s13568-019-0874-6	2019
Biotechnology	Enhanced Biobutanol Production in Folic Acid-Induced Medium by Using Clostridium acetobutylicum NRRL B-527.	Nimbalkar PR, Khedkar MA, Chavan PV, Bankar SB	ACS Omega	10.1021/acsomega.9b00583	2019
Metabolism	Regulation of butanol biosynthesis in Clostridium acetobutylicum ATCC 824 under the influence of zinc supplementation and magnesium starvation.	Mukherjee M, Sarkar P, Goswami G, Das D	Enzyme Microb Technol	10.1016/j.enzmictec.2019.05.009	2019
	Kinetic modeling of Stickland reactions-coupled methanogenesis for a methanogenic culture.	Sangavai C, Bharathi M, Ganesh SP, Chellapandi P	AMB Express	10.1186/s13568-019-0803-8	2019
Enzymology	Strategic intensification in butanol production by exogenous amino acid supplementation: Fermentation kinetics and thermodynamic studies.	Nimbalkar PR, Khedkar MA, Kulkarni RK, Chavan PV, Bankar SB	Bioresour Technol	10.1016/j.biortech.2019.121521	2019
Biotechnology	Co-production of solvents and organic acids in butanol fermentation by Clostridium acetobutylicum in the presence of lignin-derived phenolics.	Luo H, Zheng P, Xie F, Yang R, Liu L, Han S, Zhao Y, Bilal M	RSC Adv	10.1039/c9ra00325h	2019
Metabolism	Improved n-Butanol Production from Clostridium cellulovorans by Integrated Metabolic and Evolutionary Engineering.	Wen Z, Ledesma-Amaro R, Lin J, Jiang Y, Yang S	Appl Environ Microbiol	10.1128/AEM.02560-18	2019
Metabolism	Clostridium strain selection for co-culture with Bacillus subtilis for butanol production from agave hydrolysates.	Oliva-Rodriguez AG, Quintero J, Medina-Morales MA, Morales-Martinez TK, Rodriguez-De la Garza JA, Moreno-Davila M, Aroca G, Rios Gonzalez LJ	Bioresour Technol	10.1016/j.biortech.2018.12.085	2018
Metabolism	Combining chemical flocculation and bacterial co-culture of Cupriavidus taiwanensis and Ureibacillus thermosphaericus to detoxify a hardwood hemicelluloses hydrolysate and enable acetone-butanol-ethanol fermentation leading to butanol.	Theiri M, Chadjaa H, Marinova M, Jolicoeur M	Biotechnol Prog	10.1002/btpr.2753	2018
Metabolism	The significance of proline on lignocellulose-derived inhibitors tolerance in Clostridium acetobutylicum ATCC 824.	Liao Z, Guo X, Hu J, Suo Y, Fu H, Wang J	Bioresour Technol	10.1016/j.biortech.2018.10.038	2018
	Arabinose-Induced Catabolite Repression as a Mechanism for Pentose Hierarchy Control in Clostridium acetobutylicum ATCC 824.	Servinsky MD, Renberg RL, Perisin MA, Gerlach ES, Liu S, Sund CJ	mSystems	10.1128/mSystems.00064-18	2018
Metabolism	Optimisation of Simultaneous Saccharification and Fermentation (SSF) for Biobutanol Production Using Pretreated Oil Palm Empty Fruit Bunch.	Md Razali NAA, Ibrahim MF, Kamal Bahrin E, Abd-Aziz S	Molecules	10.3390/molecules23081944	2018
Metabolism	Metabolic engineering of Clostridium acetobutylicum for the production of butyl butyrate.	Noh HJ, Woo JE, Lee SY, Jang YS	Appl Microbiol Biotechnol	10.1007/s00253-018-9267-z	2018
Metabolism	Improving the fermentation performance of Clostridium acetobutylicum ATCC 824 by strengthening the VB1 biosynthesis pathway.	Liao Z, Suo Y, Xue C, Fu H, Wang J	Appl Microbiol Biotechnol	10.1007/s00253-018-9208-x	2018
	Diauxic growth of Clostridium acetobutylicum ATCC 824 when grown on mixtures of glucose and cellobiose.	Buendia-Kandia F, Rondags E, Framboisier X, Mauviel G, Dufour A, Guedon E	AMB Express	10.1186/s13568-018-0615-2	2018
Metabolism	Comparative genomic analysis of Clostridium acetobutylicum for understanding the mutations contributing to enhanced butanol tolerance and production.	Xu M, Zhao J, Yu L, Yang ST	J Biotechnol	10.1016/j.jbiotec.2017.10.010	2017
Metabolism	A dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by-product.	Zhao X, Kasbi M, Chen J, Peres S, Jolicoeur M	Biotechnol Bioeng	10.1002/bit.26393	2017
Biotechnology	Metabolic engineering of Rhodopseudomonas palustris for the obligate reduction of n-butyrate to n-butanol.	Doud DFR, Holmes EC, Richter H, Molitor B, Jander G, Angenent LT	Biotechnol Biofuels	10.1186/s13068-017-0864-3	2017
Metabolism	A two-plasmid inducible CRISPR/Cas9 genome editing tool for Clostridium acetobutylicum.	Wasels F, Jean-Marie J, Collas F, Lopez-Contreras AM, Lopes Ferreira N	J Microbiol Methods	10.1016/j.mimet.2017.06.010	2017
Biotechnology	New Insight into Sugarcane Industry Waste Utilization (Press Mud) for Cleaner Biobutanol Production by Using C. acetobutylicum NRRL B-527.	Nimbalkar PR, Khedkar MA, Gaikwad SG, Chavan PV, Bankar SB	Appl Biochem Biotechnol	10.1007/s12010-017-2479-3	2017
Pathogenicity	Improving cellular robustness and butanol titers of Clostridium acetobutylicum ATCC824 by introducing heat shock proteins from an extremophilic bacterium.	Liao Z, Zhang Y, Luo S, Suo Y, Zhang S, Wang J	J Biotechnol	10.1016/j.jbiotec.2017.04.031	2017
Metabolism	Synergistic dark and photo-fermentation continuous system for hydrogen production from molasses by Clostridium acetobutylicum ATCC 824 and Rhodobacter capsulatus DSM 1710.	Morsy FM	J Photochem Photobiol B	10.1016/j.jphotobiol.2017.02.011	2017
Metabolism	Genome analysis of a hyper acetone-butanol-ethanol (ABE) producing Clostridium acetobutylicum BKM19.	Cho C, Choe D, Jang YS, Kim KJ, Kim WJ, Cho BK, Papoutsakis ET, Bennett GN, Seung DY, Lee SY	Biotechnol J	10.1002/biot.201600457	2017
Biotechnology	Hyper-thermal acid hydrolysis and adsorption treatment of red seaweed, Gelidium amansii for butyric acid production with pH control.	Ra CH, Jeong GT, Kim SK	Bioprocess Biosyst Eng	10.1007/s00449-016-1708-4	2016
Metabolism	Periodic peristalsis increasing acetone-butanol-ethanol productivity during simultaneous saccharification and fermentation of steam-exploded corn straw.	Li J, Wang L, Chen H	J Biosci Bioeng	10.1016/j.jbiosc.2016.04.009	2016
Metabolism	Extending CRISPR-Cas9 Technology from Genome Editing to Transcriptional Engineering in the Genus Clostridium.	Bruder MR, Pyne ME, Moo-Young M, Chung DA, Chou CP	Appl Environ Microbiol	10.1128/AEM.02128-16	2016
Metabolism	A quantitative metabolomics study of high sodium response in Clostridium acetobutylicum ATCC 824 acetone-butanol-ethanol (ABE) fermentation.	Zhao X, Condruz S, Chen J, Jolicoeur M	Sci Rep	10.1038/srep28307	2016
Biotechnology	Quantitative proteomic analysis of the influence of lignin on biofuel production by Clostridium acetobutylicum ATCC 824.	Raut MP, Couto N, Pham TK, Evans C, Noirel J, Wright PC	Biotechnol Biofuels	10.1186/s13068-016-0523-0	2016
Metabolism	Fermentation of residual glycerol by Clostridium acetobutylicum ATCC 824 in pure and mixed cultures.	Dams RI, Guilherme AA, Vale MS, Nunes VF, Leitao RC, Santaella ST	Environ Technol	10.1080/09593330.2016.1173114	2016
Biotechnology	Production of a functional cell wall-anchored minicellulosome by recombinant Clostridium acetobutylicum ATCC 824.	Willson BJ, Kovacs K, Wilding-Steele T, Markus R, Winzer K, Minton NP	Biotechnol Biofuels	10.1186/s13068-016-0526-x	2016
Biotechnology	CRISPR-based genome editing and expression control systems in Clostridium acetobutylicum and Clostridium beijerinckii.	Li Q, Chen J, Minton NP, Zhang Y, Wen Z, Liu J, Yang H, Zeng Z, Ren X, Yang J, Gu Y, Jiang W, Jiang Y, Yang S	Biotechnol J	10.1002/biot.201600053	2016
Enzymology	Application to Photocatalytic H2 Production of a Whole-Cell Reaction by Recombinant Escherichia coli Cells Expressing [FeFe]-Hydrogenase and Maturases Genes.	Honda Y, Hagiwara H, Ida S, Ishihara T	Angew Chem Int Ed Engl	10.1002/anie.201600177	2016
Metabolism	Development of an inducible transposon system for efficient random mutagenesis in Clostridium acetobutylicum.	Zhang Y, Xu S, Chai C, Yang S, Jiang W, Minton NP, Gu Y	FEMS Microbiol Lett	10.1093/femsle/fnw065	2016
Biotechnology	Construction of a restriction-less, marker-less mutant useful for functional genomic and metabolic engineering of the biofuel producer Clostridium acetobutylicum.	Croux C, Nguyen NP, Lee J, Raynaud C, Saint-Prix F, Gonzalez-Pajuelo M, Meynial-Salles I, Soucaille P	Biotechnol Biofuels	10.1186/s13068-016-0432-2	2016
Enzymology	Raman spectroscopy detects phenotypic differences among Escherichia coli enriched for 1-butanol tolerance using a metagenomic DNA library.	Freedman BG, Zu TN, Wallace RS, Senger RS	Biotechnol J	10.1002/biot.201500144	2016
	Mutant generation by allelic exchange and genome resequencing of the biobutanol organism Clostridium acetobutylicum ATCC 824.	Ehsaan M, Kuit W, Zhang Y, Cartman ST, Heap JT, Winzer K, Minton NP	Biotechnol Biofuels	10.1186/s13068-015-0410-0	2016
	Periodic-peristole agitation for process enhancement of butanol fermentation.	Xia ML, Wang L, Yang ZX, Chen HZ	Biotechnol Biofuels	10.1186/s13068-015-0409-6	2015
Metabolism	In silico analysis of Clostridium acetobutylicum ATCC 824 metabolic response to an external electron supply.	Gallardo R, Acevedo A, Quintero J, Paredes I, Conejeros R, Aroca G	Bioprocess Biosyst Eng	10.1007/s00449-015-1513-5	2015
Metabolism	Feasibility of installing and maintaining anaerobiosis using Escherichia coli HD701 as a facultative anaerobe for hydrogen production by Clostridium acetobutylicum ATCC 824 from various carbohydrates.	Hassan SH, Morsy FM	Enzyme Microb Technol	10.1016/j.enzmictec.2015.08.002	2015
	Spontaneous large-scale autolysis in Clostridium acetobutylicum contributes to generation of more spores.	Liu Z, Qiao K, Tian L, Zhang Q, Liu ZY, Li FL	Front Microbiol	10.3389/fmicb.2015.00950	2015
Enzymology	Characterization of an acetoin reductase/2,3-butanediol dehydrogenase from Clostridium ljungdahlii DSM 13528.	Tan Y, Liu ZY, Liu Z, Li FL	Enzyme Microb Technol	10.1016/j.enzmictec.2015.06.011	2015
Enzymology	Structural analysis of Clostridium acetobutylicum ATCC 824 glycoside hydrolase from CAZy family GH105.	Germane KL, Servinsky MD, Gerlach ES, Sund CJ, Hurley MM	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X15012121	2015
Metabolism	Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.	Liao C, Seo SO, Celik V, Liu H, Kong W, Wang Y, Blaschek H, Jin YS, Lu T	Proc Natl Acad Sci U S A	10.1073/pnas.1423143112	2015
	Developing a mesophilic co-culture for direct conversion of cellulose to butanol in consolidated bioprocess.	Wang Z, Cao G, Zheng J, Fu D, Song J, Zhang J, Zhao L, Yang Q	Biotechnol Biofuels	10.1186/s13068-015-0266-3	2015
Metabolism	Butanol production from hexoses and pentoses by fermentation of Clostridium acetobutylicum.	Raganati F, Olivieri G, Gotz P, Marzocchella A, Salatino P	Anaerobe	10.1016/j.anaerobe.2015.05.008	2015
Metabolism	In situ hydrogen, acetone, butanol, ethanol and microdiesel production by Clostridium acetobutylicum ATCC 824 from oleaginous fungal biomass.	Hassan EA, Abd-Alla MH, Bagy MM, Morsy FM	Anaerobe	10.1016/j.anaerobe.2015.05.007	2015
Metabolism	Metabolic engineering of Clostridium tyrobutyricum for n-butanol production from maltose and soluble starch by overexpressing alpha-glucosidase.	Yu L, Xu M, Tang IC, Yang ST	Appl Microbiol Biotechnol	10.1007/s00253-015-6680-4	2015
Metabolism	Feasibility of biohydrogen production from industrial wastes using defined microbial co-culture.	Chen P, Wang Y, Yan L, Wang Y, Li S, Yan X, Wang N, Liang N, Li H	Biol Res	10.1186/s40659-015-0015-x	2015
Metabolism	Metabolic engineering of Clostridium tyrobutyricum for n-butanol production through co-utilization of glucose and xylose.	Yu L, Xu M, Tang IC, Yang ST	Biotechnol Bioeng	10.1002/bit.25613	2015
Genetics	Selectional versus mutational mechanism underlying genomic features of bacterial strand asymmetry: a case study in Clostridium acetobutylicum.	Zhao HL, Xia ZK, Hua ZG, Wei W	Genet Mol Res	10.4238/2015.March.20.1	2015
Metabolism	Metabolic engineering of Clostridium tyrobutyricum for n-butanol production: effects of CoA transferase.	Yu L, Zhao J, Xu M, Dong J, Varghese S, Yu M, Tang IC, Yang ST	Appl Microbiol Biotechnol	10.1007/s00253-015-6566-5	2015
Metabolism	Microencapsulation of Clostridium acetobutylicum ATCC 824 spores in gellan gum microspheres for the production of biobutanol.	Rathore S, Wan Sia Heng P, Chan LW	J Microencapsul	10.3109/02652048.2015.1017617	2015
Phylogeny	Acetone-butanol-ethanol production from substandard and surplus dates by Egyptian native Clostridium strains.	Abd-Alla MH, Zohri AA, El-Enany AE, Ali SM	Anaerobe	10.1016/j.anaerobe.2014.12.008	2014
Metabolism	Saccharification of rice straw by cellulase from a local Trichoderma harzianum SNRS3 for biobutanol production.	Rahnama N, Foo HL, Abdul Rahman NA, Ariff A, Md Shah UK	BMC Biotechnol	10.1186/s12896-014-0103-y	2014
Metabolism	Process development for biological production of butanol from Eastern redcedar.	Liu K, Atiyeh HK, Pardo-Planas O, Ramachandriya KD, Wilkins MR, Ezeji TC, Ujor V, Tanner RS	Bioresour Technol	10.1016/j.biortech.2014.10.148	2014
Stress	Capturing the response of Clostridium acetobutylicum to chemical stressors using a regulated genome-scale metabolic model.	Dash S, Mueller TJ, Venkataramanan KP, Papoutsakis ET, Maranas CD	Biotechnol Biofuels	10.1186/s13068-014-0144-4	2014
Metabolism	Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for (13)C metabolic flux analysis.	Au J, Choi J, Jones SW, Venkataramanan KP, Antoniewicz MR	Metab Eng	10.1016/j.ymben.2014.08.002	2014
Biotechnology	[Effect of non-ionic surfactants on butanol production with Clostridium acetobutylicum ATCC 824].	Hou T, Zhang Y, Chen X, Guan J, Mu X	Sheng Wu Gong Cheng Xue Bao		2014
Phylogeny	Engineering Clostridium acetobutylicum for production of kerosene and diesel blendstock precursors.	Bormann S, Baer ZC, Sreekumar S, Kuchenreuther JM, Dean Toste F, Blanch HW, Clark DS	Metab Eng	10.1016/j.ymben.2014.07.003	2014
Metabolism	Continuous xylose fermentation by Clostridium acetobutylicum--kinetics and energetics issues under acidogenesis conditions.	Procentese A, Raganati F, Olivieri G, Russo ME, Salatino P, Marzocchella A	Bioresour Technol	10.1016/j.biortech.2014.04.054	2014
Metabolism	Identification of PTS(Fru) as the major fructose uptake system of Clostridium acetobutylicum.	Voigt C, Bahl H, Fischer RJ	Appl Microbiol Biotechnol	10.1007/s00253-014-5809-1	2014
Metabolism	Proteomic analyses of the phase transition from acidogenesis to solventogenesis using solventogenic and non-solventogenic Clostridium acetobutylicum strains.	Jang YS, Han MJ, Lee J, Im JA, Lee YH, Papoutsakis ET, Bennett G, Lee SY	Appl Microbiol Biotechnol	10.1007/s00253-014-5738-z	2014
Metabolism	Feasibility study on microencapsulation of anaerobic Clostridium acetobutylicum ATCC 824 by emulsification method for application in biobutanol production.	Rathore S, Heng PW, Chan LW	J Microencapsul	10.3109/02652048.2013.879928	2014
Phylogeny	Evaluation of hydrogen production by clostridium strains on beet molasses.	Avci A, Kilic NK, Donmez G, Donmez S	Environ Technol	10.1080/09593330.2013.826251	2014
Metabolism	Promotion of the Clostridium acetobutylicum ATCC 824 growth and acetone-butanol-ethanol fermentation by flavonoids.	Wang L, Xia M, Zhang L, Chen H	World J Microbiol Biotechnol	10.1007/s11274-014-1619-y	2014
Metabolism	In situ butanol recovery from Clostridium acetobutylicum fermentations by expanded bed adsorption.	Wiehn M, Staggs K, Wang Y, Nielsen DR	Biotechnol Prog	10.1002/btpr.1841	2013
Metabolism	Acetone-butanol-ethanol production from corn stover pretreated by alkaline twin-screw extrusion pretreatment.	Zhang Y, Hou T, Li B, Liu C, Mu X, Wang H	Bioprocess Biosyst Eng	10.1007/s00449-013-1063-7	2013
Metabolism	Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light.	Kusakabe T, Tatsuke T, Tsuruno K, Hirokawa Y, Atsumi S, Liao JC, Hanai T	Metab Eng	10.1016/j.ymben.2013.09.007	2013
	Secretion and assembly of functional mini-cellulosomes from synthetic chromosomal operons in Clostridium acetobutylicum ATCC 824.	Kovacs K, Willson BJ, Schwarz K, Heap JT, Jackson A, Bolam DN, Winzer K, Minton NP	Biotechnol Biofuels	10.1186/1754-6834-6-117	2013
Metabolism	Enhanced butanol production in Clostridium acetobutylicum ATCC 824 by double overexpression of 6-phosphofructokinase and pyruvate kinase genes.	Ventura JR, Hu H, Jahng D	Appl Microbiol Biotechnol	10.1007/s00253-013-5075-7	2013
Metabolism	The two stage immobilized column reactor with an integrated solvent recovery module for enhanced ABE production.	Bankar SB, Survase SA, Ojamo H, Granstrom T	Bioresour Technol	10.1016/j.biortech.2013.04.046	2013
Biotechnology	Metabolic engineering of Candida utilis for isopropanol production.	Tamakawa H, Mita T, Yokoyama A, Ikushima S, Yoshida S	Appl Microbiol Biotechnol	10.1007/s00253-013-4964-0	2013
Metabolism	Butanol production by bioconversion of cheese whey in a continuous packed bed reactor.	Raganati F, Olivieri G, Procentese A, Russo ME, Salatino P, Marzocchella A	Bioresour Technol	10.1016/j.biortech.2013.03.180	2013
Metabolism	Metabolic engineering of Clostridium acetobutylicum ATCC 824 for the high-yield production of a biofuel composed of an isopropanol/butanol/ethanol mixture.	Dusseaux S, Croux C, Soucaille P, Meynial-Salles I	Metab Eng	10.1016/j.ymben.2013.03.003	2013
Metabolism	New options to engineer biofuel microbes: development and application of a high-throughput screening system.	Scheel M, Lutke-Eversloh T	Metab Eng	10.1016/j.ymben.2013.03.002	2013
Metabolism	Workflow for quantitative proteomic analysis of Clostridium acetobutylicum ATCC 824 using iTRAQ tags.	Hou S, Jones SW, Choe LH, Papoutsakis ET, Lee KH	Methods	10.1016/j.ymeth.2013.03.013	2013
Metabolism	Effects of nutritional enrichment on the production of acetone-butanol-ethanol (ABE) by Clostridium acetobutylicum.	Choi SJ, Lee J, Jang YS, Park JH, Lee SY, Kim IH	J Microbiol	10.1007/s12275-012-2373-1	2012
Metabolism	Thiolase engineering for enhanced butanol production in Clostridium acetobutylicum.	Mann MS, Lutke-Eversloh T	Biotechnol Bioeng	10.1002/bit.24758	2012
Metabolism	Improved efficiency of butanol production by absorbed lignocellulose fermentation.	He Q, Chen H	J Biosci Bioeng	10.1016/j.jbiosc.2012.09.017	2012
Metabolism	Characterization of a butanol-acetone-producing Clostridium strain and identification of its solventogenic genes.	Chua TK, Liang DW, Qi C, Yang KL, He J	Bioresour Technol	10.1016/j.biortech.2012.08.085	2012
Metabolism	Yeast extract promotes phase shift of bio-butanol fermentation by Clostridium acetobutylicum ATCC824 using cassava as substrate.	Li X, Li Z, Zheng J, Shi Z, Li L	Bioresour Technol	10.1016/j.biortech.2012.08.056	2012
Enzymology	Targeted mutagenesis of the Clostridium acetobutylicum acetone-butanol-ethanol fermentation pathway.	Cooksley CM, Zhang Y, Wang H, Redl S, Winzer K, Minton NP	Metab Eng	10.1016/j.ymben.2012.09.001	2012
Metabolism	Arabinose is metabolized via a phosphoketolase pathway in Clostridium acetobutylicum ATCC 824.	Servinsky MD, Germane KL, Liu S, Kiel JT, Clark AM, Shankar J, Sund CJ	J Ind Microbiol Biotechnol	10.1007/s10295-012-1186-x	2012
Biotechnology	Simultaneous production of isopropanol, butanol, ethanol and 2,3-butanediol by Clostridium acetobutylicum ATCC 824 engineered strains.	Collas F, Kuit W, Clement B, Marchal R, Lopez-Contreras AM, Monot F	AMB Express	10.1186/2191-0855-2-45	2012
Metabolism	Analysis of redox responses during TNT transformation by Clostridium acetobutylicum ATCC 824 and mutants exhibiting altered metabolism.	Cai X, Servinsky M, Kiel J, Sund C, Bennett GN	Appl Microbiol Biotechnol	10.1007/s00253-012-4253-3	2012
Enzymology	[Cloning and expression of key genes of butanol synthetic pathway in Escherichia coli].	Zhang Y, Zhou P, Wang P, Xie J, Ye Q	Wei Sheng Wu Xue Bao		2012
Metabolism	Engineering a homobutanol fermentation pathway in Escherichia coli EG03.	Garza E, Zhao J, Wang Y, Wang J, Iverson A, Manow R, Finan C, Zhou S	J Ind Microbiol Biotechnol	10.1007/s10295-012-1151-8	2012
Metabolism	Phosphoproteomic investigation of a solvent producing bacterium Clostridium acetobutylicum.	Bai X, Ji Z	Appl Microbiol Biotechnol	10.1007/s00253-012-4156-3	2012
Enzymology	Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico.	McAnulty MJ, Yen JY, Freedman BG, Senger RS	BMC Syst Biol	10.1186/1752-0509-6-42	2012
Metabolism	The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum.	Wietzke M, Bahl H	Appl Microbiol Biotechnol	10.1007/s00253-012-4112-2	2012
Genetics	Resonance assignments of cohesin and dockerin domains from Clostridium acetobutylicum ATCC824.	Cui Z, Li Y, Xiao Y, Feng Y, Cui Q	Biomol NMR Assign	10.1007/s12104-012-9381-2	2012
Cultivation	Integrated bioprocess for long-term continuous cultivation of Clostridium acetobutylicum coupled to pervaporation with PDMS composite membranes.	Van Hecke W, Vandezande P, Claes S, Vangeel S, Beckers H, Diels L, De Wever H	Bioresour Technol	10.1016/j.biortech.2012.02.043	2012
Metabolism	Shotgun proteomic monitoring of Clostridium acetobutylicum during stationary phase of butanol fermentation using xylose and comparison with the exponential phase.	Sivagnanam K, Raghavan VG, Shah M, Hettich RL, Verberkmoes NC, Lefsrud MG	J Ind Microbiol Biotechnol	10.1007/s10295-012-1094-0	2012
Metabolism	Novel and neglected issues of acetone-butanol-ethanol (ABE) fermentation by clostridia: Clostridium metabolic diversity, tools for process mapping and continuous fermentation systems.	Patakova P, Linhova M, Rychtera M, Paulova L, Melzoch K	Biotechnol Adv	10.1016/j.biotechadv.2012.01.010	2012
Metabolism	Continuous lactose fermentation by Clostridium acetobutylicum--assessment of energetics and product yields of the acidogenesis.	Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P	Enzyme Microb Technol	10.1016/j.enzmictec.2011.11.003	2011
Metabolism	Acetone-butanol fermentation of marine macroalgae.	Huesemann MH, Kuo LJ, Urquhart L, Gill GA, Roesijadi G	Bioresour Technol	10.1016/j.biortech.2011.12.148	2012
Metabolism	Modifying the product pattern of Clostridium acetobutylicum: physiological effects of disrupting the acetate and acetone formation pathways.	Lehmann D, Honicke D, Ehrenreich A, Schmidt M, Weuster-Botz D, Bahl H, Lutke-Eversloh T	Appl Microbiol Biotechnol	10.1007/s00253-011-3852-8	2012
Metabolism	Reaction engineering studies of acetone-butanol-ethanol fermentation with Clostridium acetobutylicum.	Schmidt M, Weuster-Botz D	Biotechnol J	10.1002/biot.201100418	2012
Metabolism	Metabolic engineering of Clostridium acetobutylicum ATCC 824 for isopropanol-butanol-ethanol fermentation.	Lee J, Jang YS, Choi SJ, Im JA, Song H, Cho JH, Seung do Y, Papoutsakis ET, Bennett GN, Lee SY	Appl Environ Microbiol	10.1128/AEM.06382-11	2011
Metabolism	An agr quorum sensing system that regulates granulose formation and sporulation in Clostridium acetobutylicum.	Steiner E, Scott J, Minton NP, Winzer K	Appl Environ Microbiol	10.1128/AEM.06376-11	2011
Metabolism	Continuous bio-catalytic conversion of sugar mixture to acetone-butanol-ethanol by immobilized Clostridium acetobutylicum DSM 792.	Survase SA, van Heiningen A, Granstrom T	Appl Microbiol Biotechnol	10.1007/s00253-011-3761-x	2011
Metabolism	Improving fatty acid production in Escherichia coli through the overexpression of malonyl coA-acyl carrier protein transacylase.	Zhang X, Agrawal A, San KY	Biotechnol Prog	10.1002/btpr.716	2011
Metabolism	DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules.	Hendrix W, Rocha AM, Padmanabhan K, Choudhary A, Scott K, Mihelcic JR, Samatova NF	BMC Syst Biol	10.1186/1752-0509-5-172	2011
	Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose.	Sivagnanam K, Raghavan VG, Shah M, Hettich RL, Verberkmoes NC, Lefsrud MG	Proteome Sci	10.1186/1477-5956-9-66	2011
Biotechnology	Continuous acetone-butanol-ethanol fermentation using SO2-ethanol-water spent liquor from spruce.	Survase SA, Sklavounos E, Jurgens G, van Heiningen A, Granstrom T	Bioresour Technol	10.1016/j.biortech.2011.09.034	2011
Metabolism	Confirmation and elimination of xylose metabolism bottlenecks in glucose phosphoenolpyruvate-dependent phosphotransferase system-deficient Clostridium acetobutylicum for simultaneous utilization of glucose, xylose, and arabinose.	Xiao H, Gu Y, Ning Y, Yang Y, Mitchell WJ, Jiang W, Yang S	Appl Environ Microbiol	10.1128/AEM.00644-11	2011
Metabolism	Biotransformation of furfural and 5-hydroxymethyl furfural (HMF) by Clostridium acetobutylicum ATCC 824 during butanol fermentation.	Zhang Y, Han B, Ezeji TC	N Biotechnol	10.1016/j.nbt.2011.09.001	2011
Metabolism	SpoIIE is necessary for asymmetric division, sporulation, and expression of sigmaF, sigmaE, and sigmaG but does not control solvent production in Clostridium acetobutylicum ATCC 824.	Bi C, Jones SW, Hess DR, Tracy BP, Papoutsakis ET	J Bacteriol	10.1128/JB.05474-11	2011
Genetics	Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture.	Bao G, Wang R, Zhu Y, Dong H, Mao S, Zhang Y, Chen Z, Li Y, Ma Y	J Bacteriol	10.1128/JB.05596-11	2011
Metabolism	Metabolic engineering of Clostridium tyrobutyricum for n-butanol production.	Yu M, Zhang Y, Tang IC, Yang ST	Metab Eng	10.1016/j.ymben.2011.04.002	2011
Metabolism	Inactivation of sigmaF in Clostridium acetobutylicum ATCC 824 blocks sporulation prior to asymmetric division and abolishes sigmaE and sigmaG protein expression but does not block solvent formation.	Jones SW, Tracy BP, Gaida SM, Papoutsakis ET	J Bacteriol	10.1128/JB.00088-11	2011
Enzymology	The issue of secretion in heterologous expression of Clostridium cellulolyticum cellulase-encoding genes in Clostridium acetobutylicum ATCC 824.	Mingardon F, Chanal A, Tardif C, Fierobe HP	Appl Environ Microbiol	10.1128/AEM.03012-10	2011
Metabolism	Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis.	Crown SB, Indurthi DC, Ahn WS, Choi J, Papoutsakis ET, Antoniewicz MR	Biotechnol J	10.1002/biot.201000282	2010
Metabolism	D-2,3-butanediol production due to heterologous expression of an acetoin reductase in Clostridium acetobutylicum.	Siemerink MA, Kuit W, Lopez Contreras AM, Eggink G, van der Oost J, Kengen SW	Appl Environ Microbiol	10.1128/AEM.01616-10	2011
Metabolism	Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018.	Hu S, Zheng H, Gu Y, Zhao J, Zhang W, Yang Y, Wang S, Zhao G, Yang S, Jiang W	BMC Genomics	10.1186/1471-2164-12-93	2011
Biotechnology	Improving the Clostridium acetobutylicum butanol fermentation by engineering the strain for co-production of riboflavin.	Cai X, Bennett GN	J Ind Microbiol Biotechnol	10.1007/s10295-010-0875-6	2010
Enzymology	Continuous lactose fermentation by Clostridium acetobutylicum--assessment of acidogenesis kinetics.	Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P	Bioresour Technol	10.1016/j.biortech.2010.09.004	2010
Metabolism	Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum.	Ren C, Gu Y, Hu S, Wu Y, Wang P, Yang Y, Yang C, Yang S, Jiang W	Metab Eng	10.1016/j.ymben.2010.05.002	2010
Metabolism	A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing.	Borden JR, Jones SW, Indurthi D, Chen Y, Papoutsakis ET	Metab Eng	10.1016/j.ymben.2009.12.004	2010
Metabolism	Tertiary structure and characterization of a glycoside hydrolase family 44 endoglucanase from Clostridium acetobutylicum.	Warner CD, Hoy JA, Shilling TC, Linnen MJ, Ginder ND, Ford CF, Honzatko RB, Reilly PJ	Appl Environ Microbiol	10.1128/AEM.02026-09	2009
Metabolism	Metabolic engineering of Clostridium acetobutylicum M5 for highly selective butanol production.	Lee JY, Jang YS, Lee J, Papoutsakis ET, Lee SY	Biotechnol J	10.1002/biot.200900142	2009
Metabolism	Development of real-time PCR primer and probe sets for detecting degenerated and non-degenerated forms of the butanol-producing bacterium Clostridium acetobutylicum ATCC 824.	Lee SM, Cho MO, Um Y, Sang BI	Appl Biochem Biotechnol	10.1007/s12010-009-8788-4	2009
Metabolism	Improvement of xylose utilization in Clostridium acetobutylicum via expression of the talA gene encoding transaldolase from Escherichia coli.	Gu Y, Li J, Zhang L, Chen J, Niu L, Yang Y, Yang S, Jiang W	J Biotechnol	10.1016/j.jbiotec.2009.08.009	2009
Metabolism	In situ product recovery of n-butanol using polymeric resins.	Nielsen DR, Prather KJ	Biotechnol Bioeng	10.1002/bit.22109	2009
Metabolism	Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.	Senger RS, Papoutsakis ET	Biotechnol Bioeng	10.1002/bit.22010	2008
Metabolism	Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems.	Senger RS, Papoutsakis ET	Biotechnol Bioeng	10.1002/bit.22009	2008
Metabolism	Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network.	Lee J, Yun H, Feist AM, Palsson BO, Lee SY	Appl Microbiol Biotechnol	10.1007/s00253-008-1654-4	2008
Metabolism	The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation.	Fiedler T, Mix M, Meyer U, Mikkat S, Glocker MO, Bahl H, Fischer RJ	J Bacteriol	10.1128/JB.00574-08	2008
Metabolism	[Extracellular glycosyl hydrolase activity of the clostridia producing acetone, butanol, and ethanol].	Berezina OV, Sineokii SP, Velikodvorskaia GA, Schwarz W, Zverlov VV	Prikl Biokhim Mikrobiol		2008
Metabolism	Biosynthesis of enantiopure (S)-3-hydroxybutyric acid in metabolically engineered Escherichia coli.	Lee SH, Park SJ, Lee SY, Hong SH	Appl Microbiol Biotechnol	10.1007/s00253-008-1473-7	2008
Metabolism	Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli.	Inui M, Suda M, Kimura S, Yasuda K, Suzuki H, Toda H, Yamamoto S, Okino S, Suzuki N, Yukawa H	Appl Microbiol Biotechnol	10.1007/s00253-007-1257-5	2007
Metabolism	Production of isopropanol by metabolically engineered Escherichia coli.	Jojima T, Inui M, Yukawa H	Appl Microbiol Biotechnol	10.1007/s00253-007-1246-8	2007
Enzymology	Engineered synthetic pathway for isopropanol production in Escherichia coli.	Hanai T, Atsumi S, Liao JC	Appl Environ Microbiol	10.1128/AEM.01140-07	2007
Phylogeny	A general framework for designing and validating oligomer-based DNA microarrays and its application to Clostridium acetobutylicum.	Paredes CJ, Senger RS, Spath IS, Borden JR, Sillers R, Papoutsakis ET	Appl Environ Microbiol	10.1128/AEM.00144-07	2007
Pathogenicity	Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum.	Borden JR, Papoutsakis ET	Appl Environ Microbiol	10.1128/AEM.02296-06	2007
Metabolism	Analysis of the mechanism and regulation of lactose transport and metabolism in Clostridium acetobutylicum ATCC 824.	Yu Y, Tangney M, Aass HC, Mitchell WJ	Appl Environ Microbiol	10.1128/AEM.02082-06	2007
Enzymology	A Standard Operating Procedure (SOP) for the preparation of intra- and extracellular proteins of Clostridium acetobutylicum for proteome analysis.	Schwarz K, Fiedler T, Fischer RJ, Bahl H	J Microbiol Methods	10.1016/j.mimet.2006.09.018	2006
Metabolism	Characterisation of a glucose phosphotransferase system in Clostridium acetobutylicum ATCC 824.	Tangney M, Mitchell WJ	Appl Microbiol Biotechnol	10.1007/s00253-006-0679-9	2006
Metabolism	Characterization of a novel ferredoxin with N-terminal extension from Clostridium acetobutylicum ATCC 824.	Kutty R, Bennett GN	Arch Microbiol	10.1007/s00203-006-0184-7	2006
	Characterisation of a transposon-induced pleiotropic mutant of Clostridium acetobutylicum P262.	Collett HJ, Woods DR, Reid SJ	Anaerobe	10.1006/anae.1997.0127	1997
Cultivation	Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH.	Fischer RJ, Oehmcke S, Meyer U, Mix M, Schwarz K, Fiedler T, Bahl H	J Bacteriol	10.1128/JB.00491-06	2006
Metabolism	Studies on inhibition of transformation of 2,4,6-trinitrotoluene catalyzed by Fe-only hydrogenase from Clostridium acetobutylicum.	Kutty R, Bennett GN	J Ind Microbiol Biotechnol	10.1007/s10295-005-0067-y	2006
Metabolism	Biological hydrogen production by Clostridium acetobutylicum in an unsaturated flow reactor.	Zhang H, Bruns MA, Logan BE	Water Res	10.1016/j.watres.2005.11.041	2006
Proteome	Proteome analysis and comparison of Clostridium acetobutylicum ATCC 824 and Spo0A strain variants.	Sullivan L, Bennett GN	J Ind Microbiol Biotechnol	10.1007/s10295-005-0050-7	2005
Enzymology	Biochemical characterization of trinitrotoluene transforming oxygen-insensitive nitroreductases from Clostridium acetobutylicum ATCC 824.	Kutty R, Bennett GN	Arch Microbiol	10.1007/s00203-005-0036-x	2005
Metabolism	Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.	Desvaux M, Khan A, Scott-Tucker A, Chaudhuri RR, Pallen MJ, Henderson IR	Biochim Biophys Acta	10.1016/j.bbamcr.2005.04.006	2005
Enzymology	Homologous and heterologous overexpression in Clostridium acetobutylicum and characterization of purified clostridial and algal Fe-only hydrogenases with high specific activities.	Girbal L, von Abendroth G, Winkler M, Benton PM, Meynial-Salles I, Croux C, Peters JW, Happe T, Soucaille P	Appl Environ Microbiol	10.1128/AEM.71.5.2777-2781.2005	2005
Biotechnology	Secretory production of biologically active rat interleukin-2 by Clostridium acetobutylicum DSM792 as a tool for anti-tumor treatment.	Barbe S, Van Mellaert L, Theys J, Geukens N, Lammertyn E, Lambin P, Anne J	FEMS Microbiol Lett	10.1016/j.femsle.2005.03.037	2005
Metabolism	Expression of abrB310 and SinR, and effects of decreased abrB310 expression on the transition from acidogenesis to solventogenesis, in Clostridium acetobutylicum ATCC 824.	Scotcher MC, Rudolph FB, Bennett GN	Appl Environ Microbiol	10.1128/AEM.71.4.1987-1995.2005	2005
Enzymology	Characterization of thermostable Xyn10A enzyme from mesophilic Clostridium acetobutylicum ATCC 824.	Ali MK, Rudolph FB, Bennett GN	J Ind Microbiol Biotechnol	10.1007/s10295-004-0192-z	2005
Metabolism	Heterologous production, assembly, and secretion of a minicellulosome by Clostridium acetobutylicum ATCC 824.	Mingardon F, Perret S, Belaich A, Tardif C, Belaich JP, Fierobe HP	Appl Environ Microbiol	10.1128/AEM.71.3.1215-1222.2005	2005
Genetics	SpoIIE regulates sporulation but does not directly affect solventogenesis in Clostridium acetobutylicum ATCC 824.	Scotcher MC, Bennett GN	J Bacteriol	10.1128/JB.187.6.1930-1936.2005	2005
Metabolism	Substrate-induced production and secretion of cellulases by Clostridium acetobutylicum.	Lopez-Contreras AM, Gabor K, Martens AA, Renckens BA, Claassen PA, Van Der Oost J, De Vos WM	Appl Environ Microbiol	10.1128/AEM.70.9.5238-5243.2004	2004
Enzymology	Identification of O2-induced peptides in an obligatory anaerobe, Clostridium acetobutylicum.	Kawasaki S, Ishikura J, Watamura Y, Niimura Y	FEBS Lett	10.1016/j.febslet.2004.06.047	2004
Enzymology	Thermostable xylanase10B from Clostridium acetobutylicum ATCC824.	Ali MK, Rudolph FB, Bennett GN	J Ind Microbiol Biotechnol	10.1007/s10295-004-0143-8	2004
Genetics	Transcriptional organization of the Clostridium acetobutylicum genome.	Paredes CJ, Rigoutsos I, Papoutsakis ET	Nucleic Acids Res	10.1093/nar/gkh509	2004
Metabolism	Production of heterologous and chimeric scaffoldins by Clostridium acetobutylicum ATCC 824.	Perret S, Casalot L, Fierobe HP, Tardif C, Sabathe F, Belaich JP, Belaich A	J Bacteriol	10.1128/JB.186.1.253-257.2004	2004
Metabolism	Analysis of the elements of catabolite repression in Clostridium acetobutylicum ATCC 824.	Tangney M, Galinier A, Deutscher J, Mitchell WJ	J Mol Microbiol Biotechnol	10.1159/000073403	2003
Enzymology	Genes malh and pagl of Clostridium acetobutylicum ATCC 824 encode NAD+- and Mn2+-dependent phospho-alpha-glucosidase(s).	Thompson J, Hess S, Pikis A	J Biol Chem	10.1074/jbc.M310733200	2003
Genetics	Development of a sensitive gene expression reporter system and an inducible promoter-repressor system for Clostridium acetobutylicum.	Girbal L, Mortier-Barriere I, Raynaud F, Rouanet C, Croux C, Soucaille P	Appl Environ Microbiol	10.1128/AEM.69.8.4985-4988.2003	2003
Metabolism	Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program.	Tomas CA, Welker NE, Papoutsakis ET	Appl Environ Microbiol	10.1128/AEM.69.8.4951-4965.2003	2003
Enzymology	Antisense RNA downregulation of coenzyme A transferase combined with alcohol-aldehyde dehydrogenase overexpression leads to predominantly alcohologenic Clostridium acetobutylicum fermentations.	Tummala SB, Junne SG, Papoutsakis ET	J Bacteriol	10.1128/JB.185.12.3644-3653.2003	2003
Metabolism	Expression of a cloned cyclopropane fatty acid synthase gene reduces solvent formation in Clostridium acetobutylicum ATCC 824.	Zhao Y, Hindorff LA, Chuang A, Monroe-Augustus M, Lyristis M, Harrison ML, Rudolph FB, Bennett GN	Appl Environ Microbiol	10.1128/AEM.69.5.2831-2841.2003	2003
Enzymology	Biodegradation pathways of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) by Clostridium acetobutylicum cell-free extract.	Zhang C, Hughes JB	Chemosphere	10.1016/s0045-6535(02)00639-2	2003
Metabolism	Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostridium acetobutylicum.	Tummala SB, Welker NE, Papoutsakis ET	J Bacteriol	10.1128/JB.185.6.1923-1934.2003	2003
Metabolism	Production by Clostridium acetobutylicum ATCC 824 of CelG, a cellulosomal glycoside hydrolase belonging to family 9.	Lopez-Contreras AM, Martens AA, Szijarto N, Mooibroek H, Claassen PA, van der Oost J, de Vos WM	Appl Environ Microbiol	10.1128/AEM.69.2.869-877.2003	2003
Phylogeny	Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum.	Sabathe F, Belaich A, Soucaille P	FEMS Microbiol Lett	10.1111/j.1574-6968.2002.tb11450.x	2002
Genetics	Molecular characterization and utilization of the CAK1 filamentous viruslike particle derived from Clostridium beijerinckii.	Li Y, Blaschek HP, Tan D	J Ind Microbiol Biotechnol	10.1038/sj/jim/7000225	2002
Metabolism	Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824.	Harris LM, Welker NE, Papoutsakis ET	J Bacteriol	10.1128/JB.184.13.3586-3597.2002	2002
Phylogeny	amyP, a reporter gene to study strain degeneration in Clostridium acetobutylicum ATCC 824.	Sabathe F, Croux C, Cornillot E, Soucaille P	FEMS Microbiol Lett	10.1111/j.1574-6968.2002.tb11165.x	2002
Metabolism	Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824.	Fontaine L, Meynial-Salles I, Girbal L, Yang X, Croux C, Soucaille P	J Bacteriol	10.1128/JB.184.3.821-830.2002	2002
Metabolism	Degeneration of solventogenic Clostridium strains monitored by Fourier transform infrared spectroscopy of bacterial cells.	Schuster KC, Goodacre R, Gapes JR, Young M	J Ind Microbiol Biotechnol	10.1038/sj.jim.7000146	2001
Metabolism	Orf5/SolR: a transcriptional repressor of the sol operon of Clostridium acetobutylicum?	Thormann K, Durre P	J Ind Microbiol Biotechnol	10.1038/sj.jim.7000144	2001
Metabolism	Characterization of a maltose transport system in Clostridium acetobutylicum ATCC 824.	Tangney M, Winters GT, Mitchell WJ	J Ind Microbiol Biotechnol	10.1038/sj.jim.7000125	2001
Enzymology	Expression of the Klebsiella pneumoniae CG21 acetoin reductase gene in Clostridium acetobutylicum ATCC 824.	Wardwell SA, Yang YT, Chang HY, San KY, Rudolph FB, Bennett GN	J Ind Microbiol Biotechnol	10.1038/sj.jim.7000179	2001
Genetics	Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.	Nolling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q, Gibson R, Lee HM, Dubois J, Qiu D, Hitti J, Wolf YI, Tatusov RL, Sabathe F, Doucette-Stamm L, Soucaille P, Daly MJ, Bennett GN, Koonin EV, Smith DR	J Bacteriol	10.1128/JB.183.16.4823-4838.2001	2001
Metabolism	Molecular analysis of the mannitol operon of Clostridium acetobutylicum encoding a phosphotransferase system and a putative PTS-modulated regulator.	Behrens S, Mitchell W, Bahl H	Microbiology (Reading)	10.1099/00221287-147-1-75	2001
Enzymology	Differential regulation of two thiolase genes from Clostridium acetobutylicum DSM 792.	Winzer K, Lorenz K, Zickner B, Durre P	J Mol Microbiol Biotechnol		2000
Metabolism	Spo0A directly controls the switch from acid to solvent production in solvent-forming clostridia.	Ravagnani A, Jennert KC, Steiner E, Grunberg R, Jefferies JR, Wilkinson SR, Young DI, Tidswell EC, Brown DP, Youngman P, Morris JG, Young M	Mol Microbiol	10.1046/j.1365-2958.2000.02071.x	2000
Metabolism	Utilisation of saccharides in extruded domestic organic waste by Clostridium acetobutylicum ATCC 824 for production of acetone, butanol and ethanol.	Lopez-Contreras AM, Claassen PA, Mooibroek H, De Vos WM	Appl Microbiol Biotechnol	10.1007/s002530000374	2000
Metabolism	Analysis of a catabolic operon for sucrose transport and metabolism in Clostridium acetobutylicum ATCC 824.	Tangney M, Mitchell WJ	J Mol Microbiol Biotechnol		2000
Enzymology	Identification and characterization of a second butyrate kinase from Clostridium acetobutylicum ATCC 824.	Huang KX, Huang S, Rudolph FB, Bennett GN	J Mol Microbiol Biotechnol		2000
Enzymology	Identification of two genes encoding putative new members of the ECF subfamily of eubacterial RNA polymerase sigma factors in Clostridium acetobutylicum.	Behrens S, Meyer U, Schankin H, Lonetto MA, Fischer RJ, Bahl H	J Mol Microbiol Biotechnol		2000
Transcriptome	Sequence analysis of the atp operon of Clostridium acetobutylicum DSM 792 encoding the F0F1 ATP synthase.	Externbrink T, Hujer S, Winzer K, Durre P	DNA Seq	10.3109/10425170009033977	2000
Metabolism	Isolation of mesophilic solvent-producing clostridia from Colombian sources: physiological characterization, solvent production and polysaccharide hydrolysis.	Montoya D, Spitia S, Silva E, Schwarz WH	J Biotechnol	10.1016/s0168-1656(00)00218-2	2000
Cultivation	Electrotransformation of Clostridium acetobutylicum ATCC 824 using high-voltage radio frequency modulated square pulses.	Tyurin M, Padda R, Huang KX, Wardwell S, Caprette D, Bennett GN	J Appl Microbiol	10.1046/j.1365-2672.2000.00032.x	2000
Enzymology	The ald gene, encoding a coenzyme A-acylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum.	Toth J, Ismaiel AA, Chen JS	Appl Environ Microbiol	10.1128/AEM.65.11.4973-4980.1999	1999
	Stable Escherichia coli-Clostridium acetobutylicum shuttle vector for secretion of murine tumor necrosis factor alpha.	Theys J, Nuyts S, Landuyt W, Van Mellaert L, Dillen C, Bohringer M, Durre P, Lambin P, Anne J	Appl Environ Microbiol	10.1128/AEM.65.10.4295-4300.1999	1999
Enzymology	Development and characterization of a gene expression reporter system for Clostridium acetobutylicum ATCC 824.	Tummala SB, Welker NE, Papoutsakis ET	Appl Environ Microbiol	10.1128/AEM.65.9.3793-3799.1999	1999
Enzymology	The glyceraldehyde-3-phosphate dehydrogenase of Clostridium acetobutylicum: isolation and purification of the enzyme, and sequencing and localization of the gap gene within a cluster of other glycolytic genes.	Schreiber W, Durre P	Microbiology (Reading)	10.1099/13500872-145-8-1839	1999
Enzymology	Characterization of methylglyoxal synthase from Clostridium acetobutylicum ATCC 824 and its use in the formation of 1, 2-propanediol.	Huang K, Rudolph FB, Bennett GN	Appl Environ Microbiol	10.1128/AEM.65.7.3244-3247.1999	1999
	Genetic manipulation of acid and solvent formation in clostridium acetobutylicum ATCC 824	Green EM, Bennett GN	Biotechnol Bioeng	10.1002/(sici)1097-0290(19980420)58:2/3<215::aid-bit14>3.0.co;2-b	1998
Metabolism	Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum.	Desai RP, Papoutsakis ET	Appl Environ Microbiol	10.1128/AEM.65.3.936-945.1999	1999
Enzymology	Electroporation of, plasmid isolation from and plasmid conservation in Clostridium acetobutylicum DSM 792.	Nakotte S, Schaffer S, Bohringer M, Durre P	Appl Microbiol Biotechnol	10.1007/s002530051335	1998
Metabolism	Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor.	Nair RV, Green EM, Watson DE, Bennett GN, Papoutsakis ET	J Bacteriol	10.1128/JB.181.1.319-330.1999	1999
Enzymology	Cloning, sequence, and expression of the phosphofructokinase gene of Clostridium acetobutylicum ATCC 824 in Escherichia coli.	Belouski E, Watson DE, Bennett GN	Curr Microbiol	10.1007/s002849900330	1998
Enzymology	Complementation of an Escherichia coli polypeptide deformylase mutant with a gene from Clostridium acetobutylicum ATCC 824.	Belouski E, Gui L, Rudolph FB, Bennett GN	Curr Microbiol	10.1007/s002849900304	1998
Metabolism	Expression of Clostridium acetobutylicum ATCC 824 genes in Escherichia coli for acetone production and acetate detoxification.	Bermejo LL, Welker NE, Papoutsakis ET	Appl Environ Microbiol	10.1128/AEM.64.3.1079-1085.1998	1998
Genetics	Physical and genetic map of the Clostridium acetobutylicum ATCC 824 chromosome.	Cornillot E, Croux C, Soucaille P	J Bacteriol	10.1128/jb.179.23.7426-7434.1997	1997
Enzymology	Acetate kinase from Clostridium acetobutylicum: a highly specific enzyme that is actively transcribed during acidogenesis and solventogenesis.	Winzer K, Lorenz K, DUrre P	Microbiology (Reading)	10.1099/00221287-143-10-3279	1997
Metabolism	The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain.	Cornillot E, Nair RV, Papoutsakis ET, Soucaille P	J Bacteriol	10.1128/jb.179.17.5442-5447.1997	1997
Phylogeny	Cultures of "Clostridium acetobutylicum" from various collections comprise Clostridium acetobutylicum, Clostridium beijerinckii, and two other distinct types based on DNA-DNA reassociation.	Johnson JL, Toth J, Santiwatanakul S, Chen JS	Int J Syst Bacteriol	10.1099/00207713-47-2-420	1997
Metabolism	Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824.	Green EM, Boynton ZL, Harris LM, Rudolph FB, Papoutsakis ET, Bennett GN	Microbiology (Reading)	10.1099/13500872-142-8-2079	1996
Enzymology	Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824.	Boynton ZL, Bennett GN, Rudolph FB	Appl Environ Microbiol	10.1128/aem.62.8.2758-2766.1996	1996
Enzymology	Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824.	Boynton ZL, Bennet GN, Rudolph FB	J Bacteriol	10.1128/jb.178.11.3015-3024.1996	1996
Metabolism	Recombination-induced variants of Clostridium acetobutylicum ATCC 824 with increased solvent production.	Wong J, Bennett GN	Curr Microbiol	10.1007/s002849900062	1996
Enzymology	Molecular characterization and transcriptional analysis of the putative hydrogenase gene of Clostridium acetobutylicum ATCC 824.	Gorwa MF, Croux C, Soucaille P	J Bacteriol	10.1128/jb.178.9.2668-2675.1996	1996
Enzymology	Inactivation of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824.	Green EM, Bennett GN	Appl Biochem Biotechnol	10.1007/BF02941702	1996
Genetics	Molecular genetics and the initiation of solventogenesis in Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052.	Wilkinson SR, Young DI, Morris JG, Young M	FEMS Microbiol Rev	10.1111/j.1574-6976.1995.tb00211.x	1995
Enzymology	Alcohol dehydrogenase: multiplicity and relatedness in the solvent-producing clostridia.	Chen JS	FEMS Microbiol Rev	10.1111/j.1574-6976.1995.tb00210.x	1995
Phylogeny	Taxonomy and phylogeny of industrial solvent-producing clostridia.	Keis S, Bennett CF, Ward VK, Jones DT	Int J Syst Bacteriol	10.1099/00207713-45-4-693	1995
Enzymology	A Clostridium acetobutylicum regulator gene (regA) affecting amylase production in Bacillus subtilis.	Davison SP, Santangelo JD, Reid SJ, Woods DR	Microbiology (Reading)	10.1099/13500872-141-4-989	1995
Enzymology	Characterization of an acetyl-CoA C-acetyltransferase (thiolase) gene from Clostridium acetobutylicum ATCC 824.	Stim-Herndon KP, Petersen DJ, Bennett GN	Gene	10.1016/0378-1119(94)00838-j	1995
Genetics	Sequence and arrangement of genes encoding sigma factors in Clostridium acetobutylicum ATCC 824.	Wong J, Sass C, Bennett GN	Gene	10.1016/0378-1119(94)00818-d	1995
	Physical map of the Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052 chromosome.	Wilkinson SR, Young M	J Bacteriol	10.1128/jb.177.2.439-448.1995	1995
Metabolism	Cyclic AMP in ruminal and other anaerobic bacteria.	Cotta MA, Wheeler MB, Whitehead TR	FEMS Microbiol Lett	10.1111/j.1574-6968.1994.tb07308.x	1994
Enzymology	Sporulation and primary sigma factor homologous genes in Clostridium acetobutylicum.	Sauer U, Treuner A, Buchholz M, Santangelo JD, Durre P	J Bacteriol	10.1128/jb.176.21.6572-6582.1994	1994
Metabolism	Expression of plasmid-encoded aad in Clostridium acetobutylicum M5 restores vigorous butanol production.	Nair RV, Papoutsakis ET	J Bacteriol	10.1128/jb.176.18.5843-5846.1994	1994
Metabolism	Analysis of Tn916-induced mutants of Clostridium acetobutylicum altered in solventogenesis and sporulation.	Mattsson DM, Rogers P	J Ind Microbiol	10.1007/BF01569758	1994
Enzymology	Molecular characterization of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824.	Nair RV, Bennett GN, Papoutsakis ET	J Bacteriol	10.1128/jb.176.3.871-885.1994	1994
Enzymology	Intracellular Concentrations of Coenzyme A and Its Derivatives from Clostridium acetobutylicum ATCC 824 and Their Roles in Enzyme Regulation.	Boynton ZL, Bennett GN, Rudolph FB	Appl Environ Microbiol	10.1128/aem.60.1.39-44.1994	1994
Metabolism	Heterologous expression of endo-beta-1,4-D-glucanase from Clostridium cellulovorans in Clostridium acetobutylicum ATCC 824 following transformation of the engB gene.	Kim AY, Attwood GT, Holt SM, White BA, Blaschek HP	Appl Environ Microbiol	10.1128/aem.60.1.337-340.1994	1994
Enzymology	Role of the C-terminal domain of the lysozyme of Clostridium acetobutylicum ATCC 824 in a chimeric pneumococcal-clostridial cell wall lytic enzyme.	Croux C, Ronda C, Lopez R, Garcia JL	FEBS Lett	10.1016/0014-5793(93)81621-6	1993
Phylogeny	Isolation of a Degeneration-Resistant Mutant of Clostridium acetobutylicum NCIMB 8052.	Kashket ER, Cao ZY	Appl Environ Microbiol	10.1128/aem.59.12.4198-4202.1993	1993
Metabolism	Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824.	Walter KA, Nair RV, Cary JW, Bennett GN, Papoutsakis ET	Gene	10.1016/0378-1119(93)90182-3	1993
Biotechnology	Metabolic engineering of Clostridium acetobutylicum ATCC 824 for increased solvent production by enhancement of acetone formation enzyme activities using a synthetic acetone operon.	Mermelstein LD, Papoutsakis ET, Petersen DJ, Bennett GN	Biotechnol Bioeng	10.1002/bit.260420906	1993
Enzymology	Cloning and sequence analysis of the genes encoding phosphotransbutyrylase and butyrate kinase from Clostridium acetobutylicum NCIMB 8052.	Oultram JD, Burr ID, Elmore MJ, Minton NP	Gene	10.1016/0378-1119(93)90677-u	1993
Enzymology	Interchange of functional domains switches enzyme specificity: construction of a chimeric pneumococcal-clostridial cell wall lytic enzyme.	Croux C, Ronda C, Lopez R, Garcia JL	Mol Microbiol	10.1111/j.1365-2958.1993.tb01231.x	1993
Genetics	Construction and characterization of a phage-plasmid hybrid (phagemid), pCAK1, containing the replicative form of viruslike particle CAK1 isolated from Clostridium acetobutylicum NCIB 6444.	Kim AY, Blaschek HP	J Bacteriol	10.1128/jb.175.12.3838-3843.1993	1993
	Determination of plasmid copy number and stability in Clostridium acetobutylicum ATCC 824.	Lee SY, Mermelstein LD, Papoutsakis ET	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06122.x	1993
Enzymology	In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T I methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824.	Mermelstein LD, Papoutsakis ET	Appl Environ Microbiol	10.1128/aem.59.4.1077-1081.1993	1993
Metabolism	Sequence and arrangement of genes encoding enzymes of the acetone-production pathway of Clostridium acetobutylicum ATCC824.	Petersen DJ, Cary JW, Vanderleyden J, Bennett GN	Gene	10.1016/0378-1119(93)90545-e	1993
Enzymology	Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes.	Walter KA, Bennett GN, Papoutsakis ET	J Bacteriol	10.1128/jb.174.22.7149-7158.1992	1992
Enzymology	Vector construction, transformation, and gene amplification in Clostridium acetobutylicum ATCC 824.	Lee SY, Mermelstein LD, Bennett GN, Papoutsakis ET	Ann N Y Acad Sci	10.1111/j.1749-6632.1992.tb42572.x	1992
Enzymology	Reconstruction and expression of the autolytic gene from Clostridium acetobutylicum ATCC 824 in Escherichia coli.	Croux C, Garcia JL	FEMS Microbiol Lett	10.1016/0378-1097(92)90730-c	1992
Enzymology	Autolysis of Clostridium acetobutylicum ATCC 824.	Croux C, Canard B, Goma G, Soucaille P	J Gen Microbiol	10.1099/00221287-138-5-861	1992
Enzymology	Purification and characterization of an extracellular muramidase of Clostridium acetobutylicum ATCC 824 that acts on non-N-acetylated peptidoglycan.	Croux C, Canard B, Goma G, Soucaille P	Appl Environ Microbiol	10.1128/aem.58.4.1075-1081.1992	1992
Enzymology	Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824.	Mermelstein LD, Welker NE, Bennett GN, Papoutsakis ET	Biotechnology (N Y)	10.1038/nbt0292-190	1992
Phylogeny	Isolation and characterization of Clostridium acetobutylicum mutants with enhanced amylolytic activity.	Annous BA, Blaschek HP	Appl Environ Microbiol	10.1128/aem.57.9.2544-2548.1991	1991
Enzymology	Cloning of the Clostridium acetobutylicum ATCC 824 acetyl coenzyme A acetyltransferase (thiolase; EC 2.3.1.9) gene.	Petersen DJ, Bennett GN	Appl Environ Microbiol	10.1128/aem.57.9.2735-2741.1991	1991
Enzymology	Sequence of the lyc gene encoding the autolytic lysozyme of Clostridium acetobutylicum ATCC824: comparison with other lytic enzymes.	Croux C, Garcia JL	Gene	10.1016/0378-1119(91)90460-s	1991
Enzymology	Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824.	Petersen DJ, Welch RW, Rudolph FB, Bennett GN	J Bacteriol	10.1128/jb.173.5.1831-1834.1991	1991
Enzymology	Purification and characterization of the extracellular alpha-amylase from Clostridium acetobutylicum ATCC 824.	Paquet V, Croux C, Goma G, Soucaille P	Appl Environ Microbiol	10.1128/aem.57.1.212-218.1991	1991
Enzymology	Cloning, sequencing, and molecular analysis of the acetoacetate decarboxylase gene region from Clostridium acetobutylicum.	Gerischer U, Durre P	J Bacteriol	10.1128/jb.172.12.6907-6918.1990	1990
Enzymology	Purification and characterization of acidolysin, an acidic metalloprotease produced by Clostridium acetobutylicum ATCC 824.	Croux C, Paquet V, Goma G, Soucaille P	Appl Environ Microbiol	10.1128/aem.56.12.3634-3642.1990	1990
Enzymology	Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli.	Petersen DJ, Bennett GN	Appl Environ Microbiol	10.1128/aem.56.11.3491-3498.1990	1990
Enzymology	Regulation and localization of amylolytic enzymes in Clostridium acetobutylicum ATCC 824.	Annous BA, Blaschek HP	Appl Environ Microbiol	10.1128/aem.56.8.2559-2561.1990	1990
Enzymology	Cloning and expression of Clostridium acetobutylicum ATCC 824 acetoacetyl-coenzyme A:acetate/butyrate:coenzyme A-transferase in Escherichia coli.	Cary JW, Petersen DJ, Papoutsakis ET, Bennett GN	Appl Environ Microbiol	10.1128/aem.56.6.1576-1583.1990	1990
	Electron Spin Resonance Analysis of the Effect of Butanol on the Membrane Fluidity of Intact Cells of Clostridium acetobutylicum.	Baer SH, Bryant DL, Blaschek HP	Appl Environ Microbiol	10.1128/aem.55.10.2729-2731.1989	1989
Metabolism	Pyruvate fermentation by Clostridium acetobutylicum.	Janati-Idrissi R, Junelles AM, el Kanouni A, Petitdemange H, Gay R	Biochem Cell Biol	10.1139/o89-110	1989
	Effects of pH and added metabolites on bioconversions by immobilized non-growing Clostridium acetobutylicum.	Reardon KF, Bailey JE	Biotechnol Bioeng	10.1002/bit.260340612	1989
Enzymology	Purification and characterization of the NADH-dependent butanol dehydrogenase from Clostridium acetobutylicum (ATCC 824).	Welch RW, Rudolph FB, Papoutsakis ET	Arch Biochem Biophys	10.1016/0003-9861(89)90489-x	1989
	Acetone-butanol-ethanol (ABE) fermentation in an immobilized cell trickle bed reactor.	Park CH, Okos MR, Wankat PC	Biotechnol Bioeng	10.1002/bit.260340104	1989
Enzymology	Cloning and expression of a Clostridium acetobutylicum alpha-amylase gene in Escherichia coli.	Verhasselt P, Poncelet F, Vits K, Van Gool A, Vanderleyden J	FEMS Microbiol Lett	10.1111/j.1574-6968.1989.tb03097.x	1989
Enzymology	Isolation and Characterization of Mutants of Clostridium acetobutylicum ATCC 824 Deficient in Acetoacetyl-Coenzyme A:Acetate/Butyrate:Coenzyme A-Transferase (EC 2.8.3.9) and in Other Solvent Pathway Enzymes.	Clark SW, Bennett GN, Rudolph FB	Appl Environ Microbiol	10.1128/aem.55.4.970-976.1989	1989
Enzymology	Coenzyme A transferase from Clostridium acetobutylicum ATCC 824 and its role in the uptake of acids.	Wiesenborn DP, Rudolph FB, Papoutsakis ET	Appl Environ Microbiol	10.1128/aem.55.2.323-329.1989	1989
Enzymology	Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis.	Wiesenborn DP, Rudolph FB, Papoutsakis ET	Appl Environ Microbiol	10.1128/aem.55.2.317-322.1989	1989
Metabolism	Isolation and characterization of xylose- and xylan-utilizing anaerobic bacteria.	Murty MV, Chandra TS	Antonie Van Leeuwenhoek	10.1007/BF00404755	1989
	Thiolase from Clostridium acetobutylicum ATCC 824 and Its Role in the Synthesis of Acids and Solvents.	Wiesenborn DP, Rudolph FB, Papoutsakis ET	Appl Environ Microbiol	10.1128/aem.54.11.2717-2722.1988	1988
	Effect of Butanol Challenge and Temperature on Lipid Composition and Membrane Fluidity of Butanol-Tolerant Clostridium acetobutylicum.	Baer SH, Blaschek HP, Smith TL	Appl Environ Microbiol	10.1128/aem.53.12.2854-2861.1987	1987
Phylogeny	Isolation and Some Properties of a beta-d-Xylosidase from Clostridium acetobutylicum ATCC 824.	Lee SF, Forsberg CW	Appl Environ Microbiol	10.1128/aem.53.4.651-654.1987	1987
Enzymology	Purification and Characterization of Two Endoxylanases from Clostridium acetobutylicum ATCC 824.	Lee SF, Forsberg CW, Rattray JB	Appl Environ Microbiol	10.1128/aem.53.4.644-650.1987	1987
Physiology	Systems analysis of the culture physiology in acetone-butanol fermentation.	Yerushalmi L, Volesky B, Votruba J	Biotechnol Bioeng	10.1002/bit.260280908	1986
	Influence of External pH and Fermentation Products on Clostridium acetobutylicum Intracellular pH and Cellular Distribution of Fermentation Products.	Huang L, Forsberg CW, Gibbins LN	Appl Environ Microbiol	10.1128/aem.51.6.1230-1234.1986	1986
	Xylanolytic Activity of Clostridium acetobutylicum.	Lee SF, Forsberg CW, Gibbins LN	Appl Environ Microbiol	10.1128/aem.50.4.1068-1076.1985	1985
	Cellulolytic Activity of Clostridium acetobutylicum.	Lee SF, Forsberg CW, Gibbins LN	Appl Environ Microbiol	10.1128/aem.50.2.220-228.1985	1985
Biotechnology	Production of Solvents by Clostridium acetobutylicum Cultures Maintained at Neutral pH.	Holt RA, Stephens GM, Morris JG	Appl Environ Microbiol	10.1128/aem.48.6.1166-1170.1984	1984
Pathogenicity	Effect of butanol on lipid composition and fluidity of Clostridium acetobutylicum ATCC 824.	Vollherbst-Schneck K, Sands JA, Montenecourt BS	Appl Environ Microbiol	10.1128/aem.47.1.193-194.1984	1984
Biotechnology	Butanol Production by a Butanol-Tolerant Strain of Clostridium acetobutylicum in Extruded Corn Broth.	Lin YL, Blaschek HP	Appl Environ Microbiol	10.1128/aem.45.3.966-973.1983	1983
Enzymology	[Effect of growth phase and composition of the medium on the rate of biosynthesis of NADH: rubredoxin oxidoreductase in Clostridium acetobutylicum].	Marczak R, Petitdemange H, Alimi F, Ballongue J, Gay R	C R Seances Acad Sci III		1983
Biotechnology	Acetone and Butanol Production by Clostridium acetobutylicum in a Synthetic Medium.	Monot F, Martin JR, Petitdemange H, Gay R	Appl Environ Microbiol	10.1128/aem.44.6.1318-1324.1982	1982
Phylogeny	Clostridium guangxiense sp. nov. and Clostridium neuense sp. nov., two phylogenetically closely related hydrogen-producing species isolated from lake sediment.	Zhao X, Li D, Xu S, Guo Z, Zhang Y, Man L, Jiang B, Hu X.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001702	2017

References

#449	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 792
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#55354	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42182 C
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium acetobutylicum (DSM 792, ATCC 824, VKM B-1787)

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