Name: Tepidimicrobium ferriphilum SB91
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2514

Type strain:

Species: Tepidimicrobium ferriphilum

Strain Designation: SB91

Culture col. no.: DSM 16624, VKM B-2348

Strain history: <- A. I. Slobodkin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SB91 <- A. I. Slobodkin {2004}

NCBI tax ID(s): 285106 (species)

SI-ID 289985

DSM 16624, VKM B-2348

Section

Tepidimicrobium ferriphilum SB91 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from sediment of a freshwater hot spring.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Tissierellales*
	Family	*Tissierellaceae*
	Genus	*Tepidimicrobium*
	Species	**Tepidimicrobium ferriphilum**
	Full Scientific Name (LPSN)	Tepidimicrobium ferriphilum Slobodkin et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31501]	Gram stain	positive

[Ref.: #31501]	Cell length	03-07 µm

[Ref.: #31501]	Cell width	0.5-0.6 µm

[Ref.: #31501]	Cell shape	rod-shaped

[Ref.: #31501]	Motility	yes

[Ref.: #31501]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6531]

Culture medium

THERMOTERRABACTERIUM MEDIUM (DSMZ Medium 778)

[Ref.: #6531]

Culture medium growth

[Ref.: #6531]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6531]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6531]	growth	50 °C
[Ref.: #31501]	growth	26-62 °C
[Ref.: #31501]	optimum	50 °C

[Ref.: #6531]	Temperature range	thermophilic
[Ref.: #31501]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31501]			optimum	7.5-8
[Ref.: #31501]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6531]	Oxygen tolerance	anaerobe
[Ref.: #31501]	Oxygen tolerance	anaerobe

[Ref.: #31501]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31501]		NaCl		growth	0-3.5	%
[Ref.: #31501]		NaCl		optimum	0-3.5	%

[Ref.: #31501]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31501]	alanine ChEBI	+	carbon source
[Ref.: #31501]	glycine ChEBI	+	carbon source
[Ref.: #31501]	proline ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6531]	Sample type/isolated from	sediment of a freshwater hot spring
[Ref.: #6531]	Geographic location (country and/or sea, region)	Buryatiya, Barguzin Valley
[Ref.: #6531]	Country	Russia
[Ref.: #6531]	Country ISO 3 Code	RUS
[Ref.: #6531]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ461826 (>99% sequence identity) for Tepidimicrobium ferriphilum subclade from Microbeatlas

Aquatic Samples	371
Soil Samples	2025
Animal Samples	444
Plant Samples	799
Total Samples	3639

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6531]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6531]	Tepidimicrobium ferriphilum strain SB91 16S ribosomal RNA gene, partial sequence	AY656718	1493	ENA	285106 tax ID
[Ref.: #31501]	Tepidimicrobium ferriphilum strain SB91 16S ribosomal RNA gene, partial sequence	AY656718.	1493	GenBank	285106 tax ID
[Ref.: #20218]	Tepidimicrobium ferriphilum strain DSM 16624 16S ribosomal RNA gene, partial sequence	GQ461826	1473	ENA	285106 tax ID	*

[Ref.: #6531]

GC-content

33 mol%

Availability in culture collections External links

[Ref.: #6531]

Culture collection no.

DSM 16624, VKM B-2348

[Ref.: #72049]

SI-ID 289985

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately thermophilic, Fe(III)-reducing bacterium of the order Clostridiales.	Slobodkin AI, Tourova TP, Kostrikina NA, Lysenko AM, German KE, Bonch-Osmolovskaya EA, Birkeland NK	Int J Syst Evol Microbiol	10.1099/ijs.0.63694-0	2006	*

References

#6531

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16624

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31501

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27799 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72049

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289985.1 )

#27799

IJSEM 369 2006 ( DOI 10.1099/ijs.0.63694-0 , PubMed 16449442 )

* These data were automatically processed and therefore are not curated

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