Name: Clostridium polyendosporum PS-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2499

Type strain:

Species: Clostridium polyendosporum

Strain Designation: PS-1

Culture col. no.: DSM 5272, JCM 30710, VKM B-1724

Strain history: DSM 5272 <-- VKM B-1724 <-- V. I. Duda PS-1.

NCBI tax ID(s): 69208 (species)

SI-ID 47915

DSM 5272, VKM B-1724

Section

Clostridium polyendosporum PS-1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from meadow-gley soil, rice field.

Gram-positive
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium polyendosporum**
	Full Scientific Name (LPSN)	Clostridium polyendosporum (Duda et al. 1996) Rainey et al. 2016

Synonym

Anaerobacter polyendosporus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1978]

Culture medium

ANAEROBACTER MEDIUM (DSMZ Medium 482)

[Ref.: #1978]

Culture medium growth

[Ref.: #1978]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1978]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1978]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #1978]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1978]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.667

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.329

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1978]	Sample type/isolated from	meadow-gley soil, rice field
[Ref.: #1978]	Country	Burma
[Ref.: #1978]	Country ISO 3 Code	MMR
[Ref.: #1978]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Meadow-gley soil under rice
[Ref.: #67770]	Country	Burma
[Ref.: #67770]	Country ISO 3 Code	MMR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1978]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1978]	Anaerobacter polyendosporus 16S rRNA gene, partial, strain DSM 5272	Y18189	1456	ENA	69208 tax ID
[Ref.: #67770]	Anaerobacter polyendosporus 16S ribosomal RNA, partial	AJ222546	1500	ENA	69208 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium polyendosporum JCM 30710	GCA_018332455	scaffold	GenBank	69208 tax ID	*
[Ref.: #66792]	Clostridium polyendosporum strain JCM 30710	69208.3	wgs	PATRIC	69208 tax ID	*

[Ref.: #1978]	GC-content	29.0 mol%
[Ref.: #67770]	GC-content	29 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium polyendosporum JCM 30710 NCBI: GCA_018332455.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium polyendosporum JCM 30710 NCBI: GCA_018332455.1
[Ref.: #69480]	flagellated	no	80.902	no
[Ref.: #69480]	gram-positive	yes	81.972	no
[Ref.: #69480]	anaerobic	yes	98.345	yes
[Ref.: #69480]	aerobic	no	98.353	yes
[Ref.: #69480]	halophile	no	93.231	no
[Ref.: #69480]	spore-forming	yes	92.528	no
[Ref.: #69480]	thermophile	no	92.292	yes
[Ref.: #69480]	glucose-util	yes	89.57	no
[Ref.: #69480]	motile	no	88.388	no
[Ref.: #69480]	glucose-ferment	yes	55.921	no

Availability in culture collections External links

[Ref.: #1978]

Culture collection no.

DSM 5272, JCM 30710, VKM B-1724

[Ref.: #72036]

SI-ID 47915

Literature:

	Title	Authors	Journal	DOI	Year
Metabolism	[transversion of cell polarity from Bi- to multipolarity is the mechanism determining multiple spore formation in Anaerobacter polyendosporus PS-1T].	Duda VI, Suzina NE, Polivtseva VN, Gafarov AB, Shorokhova AP, Machulin AV	Mikrobiologiia		2014	*
	[Mechanisms of Forespore Formation during Polysporogenesis of an Anaerobic Bacterium Anaerobacter polyendosporus PST(T)].	Duda VI, Suzina NE	Mikrobiologiia		2015	*

References

#1978

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5272

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72036

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47915.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium polyendosporum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Clostridium polyendosporum JCM 30710

Clostridium polyendosporum JCM 30710

Change proposal

Change proposal