Name: Thiophaeococcus mangrovi JA304
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2494

Type strain:

Species: Thiophaeococcus mangrovi

Strain Designation: JA304

Culture col. no.: DSM 19863, JCM 14889

Strain history: Ch. Sasikala JA304.

NCBI tax ID(s): 453581 (species)

Section

Thiophaeococcus mangrovi JA304 is an obligate anaerobe, Gram-negative, motile bacterium that was isolated from mud from brackish water in the Bhitarkanika mangrove forest .

coccus-shaped
Gram-negative
motile
obligate anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiophaeococcus*
	Species	**Thiophaeococcus mangrovi**
	Full Scientific Name (LPSN)	Thiophaeococcus mangrovi Anil Kumar et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32612]	Gram stain	negative

[Ref.: #32612]	Cell width	2-2.5 µm

[Ref.: #32612]	Cell shape	coccus-shaped

[Ref.: #32612]	Motility	yes

[Ref.: #32612]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32612]	growth	20-35 °C
[Ref.: #32612]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32612]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32612]			optimum	7.2
[Ref.: #32612]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8358]	Oxygen tolerance	obligate anaerobe
[Ref.: #32612]	Oxygen tolerance	anaerobe

[Ref.: #32612]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32612]		NaCl		growth	0.5-4	%
[Ref.: #32612]		NaCl		optimum	1	%

[Ref.: #32612]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32612]	fructose ChEBI	+	carbon source
[Ref.: #32612]	glucose ChEBI	+	carbon source
[Ref.: #32612]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8358]	Sample type/isolated from	mud from brackish water in the Bhitarkanika mangrove forest (20° 49' N 86° 47' E)
[Ref.: #8358]	Geographic location (country and/or sea, region)	Orissa
[Ref.: #8358]	Country	India
[Ref.: #8358]	Country ISO 3 Code	IND
[Ref.: #8358]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mud sample from Bhitarkanika mangrove forest of Orissa
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Forest

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM748925 (>99% sequence identity) for Thiophaeococcus mangrovi subclade from Microbeatlas

Aquatic Samples	193
Soil Samples	28
Animal Samples	16
Plant Samples	1
Total Samples	238

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8358]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8358]	Thiophaeococcus mangrovi partial 16S rRNA gene, type strain JA304T	AM748925	1440	ENA	453581 tax ID

[Ref.: #8358]	GC-content	68.1-68.9 mol%
[Ref.: #67770]	GC-content	68.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #8358]

Culture collection no.

DSM 19863, JCM 14889

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thiophaeococcus fuscus sp. nov., isolated from a lagoon.	Divyasree B, Lakshmi KVNS, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.062182-0	2014	*
Phylogeny	Thiophaeococcus mangrovi gen. nov., sp. nov., a photosynthetic, marine gammaproteobacterium isolated from the Bhitarkanika mangrove forest of India.	Anil Kumar P, Srinivas TN, Sasikala Ch, Ramana ChV, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65775-0	2008	*

References

#8358

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19863

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32612

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28825 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28825

IJSEM 2660 2008 ( DOI 10.1099/ijs.0.65775-0 , PubMed 18984710 )

* These data were automatically processed and therefore are not curated

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