Geodermatophilus poikilotrophus G18 | Type strain | DSM 44209, CCUG 63018 | BacDiveID:24846

Strain identifier

BacDive ID: 24846

Type strain:

Species: Geodermatophilus poikilotrophus

Strain Designation: G18

Culture col. no.: DSM 44209, CCUG 63018

Strain history: <- M. Eppard, isolate G18, ("Geodermatophilus obscurus ssp. dictyosporus")

NCBI tax ID(s): 1333667 (species)

SI-ID 405259

DSM 44209, CCUG 63018

Section

Geodermatophilus poikilotrophus G18 is an aerobe, spore-forming, mesophilic bacterium that was isolated from dolomitic marble outcrops.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Geodermatophilus*
	Species	**Geodermatophilus poikilotrophus**
	Full Scientific Name (LPSN)	Geodermatophilus poikilotrophus corrig. Montero-Calasanz et al. 2015

Synonym

Geodermatophilus poikilotrophi

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Incubation period

7-10 days

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

GEO-MEDIUM (DSMZ Medium 714)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20579]			growth	28 °C
[Ref.: #62931]			growth	30 °C

[Ref.: #20579]	Temperature range	mesophilic
[Ref.: #62931]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %95.173

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20579]	Sample type/isolated from	dolomitic marble outcrops
[Ref.: #20579]	Geographic location (country and/or sea, region)	Samara
[Ref.: #20579]	Country	Namibia
[Ref.: #20579]	Country ISO 3 Code	NAM
[Ref.: #20579]	Continent	Africa

[Ref.: #62931]	Sample type/isolated from	Dolomitic marble
[Ref.: #62931]	Sampling date	1993
[Ref.: #62931]	Geographic location (country and/or sea, region)	Samara
[Ref.: #62931]	Country	Namibia
[Ref.: #62931]	Country ISO 3 Code	NAM
[Ref.: #62931]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

Global distribution of 16S sequence HF970583 (>99% sequence identity) for Geodermatophilus from Microbeatlas

Aquatic Samples	84
Soil Samples	974
Animal Samples	84
Plant Samples	232
Total Samples	1374

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20579]	Geodermatophilus poikilotrophus partial 16S rRNA gene, type strain DSM 44209T	HF970583	1514	ENA	1333667 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Geodermatophilus poikilotrophus DSM 44209	GCA_900111455	scaffold	GenBank	1333667 tax ID	*
[Ref.: #66792]	Geodermatophilus poikilotrophus strain DSM 44209	1333667.3	wgs	PATRIC	1333667 tax ID	*
[Ref.: #66792]	Geodermatophilus poikilotrophi DSM 44209	2636416082	draft	JGI IMG/M	1333667 tax ID	*

GC-content

74.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Geodermatophilus poikilotrophus DSM 44209 NCBI: GCA_900111455.1
[Ref.: #69481]	spore-forming	yes	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geodermatophilus poikilotrophus DSM 44209 NCBI: GCA_900111455.1
[Ref.: #69480]	motile	yes	76.875	no
[Ref.: #69480]	flagellated	no	91.865	no
[Ref.: #69480]	gram-positive	yes	93.075	no
[Ref.: #69480]	anaerobic	no	98.239	yes
[Ref.: #69480]	aerobic	yes	90.076	yes
[Ref.: #69480]	halophile	no	84.974	no
[Ref.: #69480]	spore-forming	no	73.344	no
[Ref.: #69480]	glucose-ferment	no	90.346	no
[Ref.: #69480]	thermophile	no	95.493	no
[Ref.: #69480]	glucose-util	yes	87.506	no

Availability in culture collections External links

Culture collection no.

DSM 44209, CCUG 63018

SI-ID 405259

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geodermatophilus pulveris sp. nov., a gamma-radiation-resistant actinobacterium isolated from the Sahara desert.	Hezbri K, Ghodhbane-Gtari F, Montero-Calasanz MDC, Nouioui I, Rohde M, Sproer C, Schumann P, Klenk HP, Gtari M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001272	2016	*
Phylogeny	Geodermatophilus poikilotrophi sp. nov.: a multitolerant actinomycete isolated from dolomitic marble.	del Carmen Montero-Calasanz M, Hofner B, Goker M, Rohde M, Sproer C, Hezbri K, Gtari M, Schumann P, Klenk HP	Biomed Res Int	10.1155/2014/914767	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20579

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44209

#62931 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63018

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88662

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405259.1 )

* These data were automatically processed and therefore are not curated

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