Name: Mesotoga infera meso xx
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24816

Type strain:

Species: Mesotoga infera

Strain Designation: meso xx, VNs100

Culture col. no.: DSM 25546, JCM 18154

Strain history: M.-L. Fardeau VNs100.

NCBI tax ID(s): 1236046 (species)

SI-ID 407060

DSM 25546

Section

Mesotoga infera meso xx is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from anoxic water of a deep gas storage aquifer.

Gram-negative
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Kosmotogales*
	Family	*Kosmotogaceae*
	Genus	*Mesotoga*
	Species	**Mesotoga infera**
	Full Scientific Name (LPSN)	Mesotoga infera Ben Hania et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30940]	Gram stain	negative

[Ref.: #30940]	Cell length	3 µm

[Ref.: #30940]	Cell width	1.5 µm

[Ref.: #30940]	Cell shape	rod-shaped

[Ref.: #30940]	Motility	no

[Ref.: #21238]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21238]

Culture medium

DEFLUVIITOGA MEDIUM (DSMZ Medium 1328)

[Ref.: #21238]

Culture medium growth

[Ref.: #21238]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21238]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21238]	growth	45 °C
[Ref.: #30940]	growth	30-50 °C
[Ref.: #30940]	optimum	45 °C
[Ref.: #67770]	growth	45 °C

[Ref.: #21238]	Temperature range	thermophilic
[Ref.: #30940]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30940]			optimum	7.4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21238]	Oxygen tolerance	anaerobe
[Ref.: #30940]	Oxygen tolerance	anaerobe

[Ref.: #30940]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30940]		NaCl		optimum	0.2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30940]	arabinose ChEBI	+	carbon source
[Ref.: #30940]	cellobiose ChEBI	+	carbon source
[Ref.: #30940]	fructose ChEBI	+	carbon source
[Ref.: #30940]	galactose ChEBI	+	carbon source
[Ref.: #30940]	glucose ChEBI	+	carbon source
[Ref.: #30940]	lactate ChEBI	+	carbon source
[Ref.: #30940]	lactose ChEBI	+	carbon source
[Ref.: #30940]	maltose ChEBI	+	carbon source
[Ref.: #30940]	mannose ChEBI	+	carbon source
[Ref.: #30940]	raffinose ChEBI	+	carbon source
[Ref.: #30940]	ribose ChEBI	+	carbon source
[Ref.: #30940]	sucrose ChEBI	+	carbon source
[Ref.: #30940]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21238]	Sample type/isolated from	anoxic water of a deep gas storage aquifer
[Ref.: #21238]	Geographic location (country and/or sea, region)	Parisien Basin at a depth of 830 m
[Ref.: #21238]	Country	France
[Ref.: #21238]	Country ISO 3 Code	FRA
[Ref.: #21238]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Anoxic water sample of a deep aquifer formation near Paris
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE818616 (>99% sequence identity) for Mesotoga infera subclade from Microbeatlas

Aquatic Samples	5318
Soil Samples	386
Animal Samples	805
Plant Samples	328
Total Samples	6837

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21238]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21238]	Mesotoga infera partial 16S rRNA gene, type strain VNs100T, copy 1	HE818616	1478	ENA	1236046 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesotoga infera VNs100	2590828825	draft	JGI IMG/M	1236046 tax ID	*

[Ref.: #21238]	GC-content	47.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30940]	GC-content	47.5 mol%

Availability in culture collections External links

[Ref.: #21238]

Culture collection no.

DSM 25546, JCM 18154

[Ref.: #88637]

SI-ID 407060

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer.	Ben Hania W, Postec A, Aullo T, Ranchou-Peyruse A, Erauso G, Brochier-Armanet C, Hamdi M, Ollivier B, Saint-Laurent S, Magot M, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijs.0.047993-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21238

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25546

#30940

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27270 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88637

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407060.1 )

#27270

IJSEM 3003 2013 ( DOI 10.1099/ijs.0.047993-0 , PubMed 23378116 )

* These data were automatically processed and therefore are not curated

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