Name: Borrelia garinii subsp. bavariensis PBi
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24806

Type strain:

Species: Borrelia garinii subsp. bavariensis

Strain Designation: PBi

Culture col. no.: DSM 23469, ATCC BAA-2496

Strain history: <- V. Fingerle, Nationales Referenzzentrum für Borrelien <- M. Bauer, Max von Pettenkofer-Inst., Munich; PBi

NCBI tax ID(s): 29519 (species)

SI-ID 397107

DSM 23469

Section

Borrelia garinii subsp. bavariensis PBi is a microaerophile, mesophilic bacterium that was isolated from human cerebrospinal fluid.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Borreliaceae*
	Genus	*Borrelia*
	Species	**Borrelia garinii subsp. bavariensis**
	Full Scientific Name (LPSN)	Borrelia garinii subsp. bavariensis (Margos et al. 2013) Hördt et al. 2020

	Synonym	Borrelia bavariensis
	Synonym	Borreliella bavariensis

Information on morphological and physiological properties Morphology

[Ref.: #20465]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20465]

Culture medium

BSK-MEDIUM (DSMZ Medium 403)

[Ref.: #20465]

Culture medium growth

[Ref.: #20465]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20465]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20465]			growth	32 °C

[Ref.: #20465]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20465]

Oxygen tolerance

microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20465]	Sample type/isolated from	human cerebrospinal fluid
[Ref.: #20465]	Geographic location (country and/or sea, region)	Ingoldstadt
[Ref.: #20465]	Country	Germany
[Ref.: #20465]	Country ISO 3 Code	DEU
[Ref.: #20465]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Cerebrospinal fluid
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X85199 (>99% sequence identity) for Borreliella from Microbeatlas

Aquatic Samples	378
Soil Samples	126
Animal Samples	1133
Plant Samples	40
Total Samples	1677

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20465]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20465]	Borrelia garinii PBi 16S rRNA gene, strain PBi	X85199	1488	ENA	290434 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Borreliella bavariensis PBi	GCA_003814425	complete	GenBank	290434 tax ID	*
[Ref.: #66792]	Borreliella bavariensis PBi	GCA_000196215	complete	GenBank	290434 tax ID	*
[Ref.: #66792]	Borrelia garinii PBi	290434.5	complete	PATRIC	290434 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Borrelia garinii subsp. bavariensis PBi PBi NCBI: GCA_003814425.1
[Ref.: #69480]	motile	yes	88.138	no
[Ref.: #69480]	flagellated	no	87.793	no
[Ref.: #69480]	gram-positive	no	93.234	no
[Ref.: #69480]	anaerobic	no	92.481	no
[Ref.: #69480]	aerobic	no	97.331	no
[Ref.: #69480]	halophile	yes	64.542	no
[Ref.: #69480]	spore-forming	no	97.557	no
[Ref.: #69480]	thermophile	no	87.473	no
[Ref.: #69480]	glucose-util	yes	78.548	no
[Ref.: #69480]	glucose-ferment	yes	67.915	no

Availability in culture collections External links

[Ref.: #20465]

Culture collection no.

DSM 23469, ATCC BAA-2496

[Ref.: #88628]

SI-ID 397107

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Borrelia bavariensis sp. nov. is widely distributed in Europe and Asia.	Margos G, Wilske B, Sing A, Hizo-Teufel C, Cao WC, Chu C, Scholz H, Straubinger RK, Fingerle V	Int J Syst Evol Microbiol	10.1099/ijs.0.052001-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20465

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23469

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88628

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397107.1 )

* These data were automatically processed and therefore are not curated

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Borrelia garinii subsp. bavariensis PBi PBi

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