Ardenticatena maritima (DSM 23922, ATCC BAA-2145, JCM 17282)

Name: Ardenticatena maritima (DSM 23922, ATCC BAA-2145, JCM 17282)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24797

Type strain

Strain Designation 110S

Culture col. no. DSM 23922 ATCC BAA-2145 JCM 17282 KCTC 23289 NBRC 107679 1 more

NCBI tax ID(s) 872965

Special Collections DSMZ JCM KCTC Literature strains

History <- N. Ito, Kyoto Univ., Japan; 110S <- N. Ito {2010} N. Ito 110S. <- Norihiro Ito, Kyoto Univ., Japan

Links

Ardenticatena maritima 110S is a facultative aerobe, Gram-negative bacterium that was isolated from iron-rich sediment from a coastal hydrothermal field.

Gram-negative facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405009

ATCC BAA-2145,KCTC 23289,JCM 17282,NBRC 107679,DSM 23922

@ref 20215

Last LPSN update 2026-02-09 11:24:04

Domain Bacteria

Phylum Chloroflexota

Class Ardenticatenia

Order Ardenticatenales

Family Ardenticatenaceae

Genus Ardenticatena

Species Ardenticatena maritima

Full scientific name Ardenticatena maritima Kawaichi et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Motility
30875	negative
67771	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21262	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21262	positive	growth	65
30875	positive	growth	30-75
30875	positive	optimum	62.5
67770	positive	growth	65
67771	positive	growth	65

Culture pH

@ref	Ability	Type	PH
30875	positive	optimum	6.75
30875	positive	growth	5.5-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30875	facultative aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
30875
125439		97

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30875	NaCl	positive	growth	0.0-6.0 %
30875	NaCl	positive	optimum	1.5 %

Observation

67770

Observationquinones: MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30875	30089 ChEBI	acetate	+	carbon source
30875	22653 ChEBI	asparagine	+	carbon source
30875	17234 ChEBI	glucose	+	carbon source
30875	29987 ChEBI	glutamate	+	carbon source
30875	25115 ChEBI	malate	+	carbon source
30875	17306 ChEBI	maltose	+	carbon source
30875	15361 ChEBI	pyruvate	+	carbon source
30875	16634 ChEBI	raffinose	+	carbon source
30875	30031 ChEBI	succinate	+	carbon source
30875	17992 ChEBI	sucrose	+	carbon source
30875	27082 ChEBI	trehalose	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	glycine betaine biosynthesis	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	pentose phosphate pathway	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	starch degradation	80	8 of 10
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	glycogen metabolism	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	chorismate metabolism	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	tyrosine metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	vitamin B1 metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	nitrate assimilation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	d-mannose degradation	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	methionine metabolism	65.38	17 of 26
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	non-pathway related	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	oxidative phosphorylation	58.24	53 of 91
66794	tryptophan metabolism	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	vitamin B12 metabolism	55.88	19 of 34
66794	serine metabolism	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	lipid metabolism	51.61	16 of 31
66794	degradation of pentoses	50	14 of 28
66794	coenzyme M biosynthesis	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	myo-inositol biosynthesis	50	5 of 10
66794	biotin biosynthesis	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	carotenoid biosynthesis	45.45	10 of 22
66794	degradation of hexoses	44.44	8 of 18
66794	mevalonate metabolism	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	ascorbate metabolism	40.91	9 of 22
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	cholesterol biosynthesis	36.36	4 of 11
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	vitamin B6 metabolism	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	methanogenesis from CO2	25	3 of 12
66794	vitamin E metabolism	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Sediment
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21262	iron-rich sediment from a coastal hydrothermal field	Yamagawa, Ibusuki, Kagoshima	Japan	JPN	Asia	31.1828	130.616 31.1828/130.616
67770	Iron-rich coastal hydrothermal field		Japan	JPN	Asia
67771	From ron-rich sediment from acostal hydrothermal field	Yamagawa, Ibusuki, Kagoshima	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB576167 (>99% sequence identity) for Ardenticatena maritima subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	2
Animal Samples	17
Plant Samples
Total Samples	29

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21262	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM130617v1 assembly for Ardenticatena maritima 110S	contig	GCA_001306175	872965.11	2651869644	872965	74.97
67770	ASM129354v1 assembly for Ardenticatena maritima 110S	scaffold	GCA_001293545	872965.10	2671180960	872965

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21262	Ardenticatena maritima gene for 16S rRNA, partial sequence	AB576167	1453		872965

GC content

@ref	GC-content (mol%)	Method
21262	51.5	high performance liquid chromatography (HPLC)
30875	51.5
67770	59.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ardenticatena maritima 110S
NCBI: GCA_001293545

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	no	61.50	no
125439	gram_stain	BacteriaNetⓘ	positive	68.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	77.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ardenticatena maritima strain 110S
PATRIC: 872965.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	50.94	no
125438	anaerobic	anaerobicⓘ	no	84.50	yes
125438	aerobic	aerobicⓘ	yes	69.38	no
125438	spore-forming	spore-formingⓘ	no	65.63	yes
125438	thermophilic	thermophileⓘ	yes	61.96	yes
125438	flagellated	motile2+ⓘ	no	75.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequence of Ardenticatena maritima 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia.	Hemp J, Ward LM, Pace LA, Fischer WW.	Genome Announc	10.1128/genomea.01347-15	2015
	Anodic and Cathodic Extracellular Electron Transfer by the Filamentous Bacterium Ardenticatena maritima 110S.	Kawaichi S, Yamada T, Umezawa A, McGlynn SE, Suzuki T, Dohmae N, Yoshida T, Sako Y, Matsushita N, Hashimoto K, Nakamura R.	Front Microbiol	10.3389/fmicb.2018.00068	2018
Phylogeny	Ardenticatena maritima gen. nov., sp. nov., a ferric iron- and nitrate-reducing bacterium of the phylum 'Chloroflexi' isolated from an iron-rich coastal hydrothermal field, and description of Ardenticatenia classis nov.	Kawaichi S, Ito N, Kamikawa R, Sugawara T, Yoshida T, Sako Y	Int J Syst Evol Microbiol	10.1099/ijs.0.046532-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21262	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23922
#27205	IJSEM 2992 2013 ( DOI 10.1099/ijs.0.046532-0 , PubMed 23378114 )
#30875	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27205
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ardenticatena maritima (DSM 23922, ATCC BAA-2145, JCM 17282)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001306175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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