Name: Marinifilum flexuosum M30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24786

Type strain:

Species: Marinifilum flexuosum

Strain Designation: M30

Culture col. no.: DSM 21950, CECT 7448

Strain history: <- M. J. Pujalte, Univ. València, Campus Burjassot, Spain; M30

NCBI tax ID(s): 1117708 (species)

SI-ID 390804

CECT 7448, DSM 21950

Section

Marinifilum flexuosum M30 is a Gram-negative bacterium that was isolated from surface seawater.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Marinifilaceae*
	Genus	*Marinifilum*
	Species	**Marinifilum flexuosum**
	Full Scientific Name (LPSN)	Marinifilum flexuosum Ruvira et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21199]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21199]

Culture medium growth

[Ref.: #21199]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21199]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21199]			growth	20-28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.97

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21199]	Sample type/isolated from	surface seawater
[Ref.: #21199]	Geographic location (country and/or sea, region)	Malvarrosa beach near Valencia (39°28'29''N; 0°19'23''W)
[Ref.: #21199]	Country	Spain
[Ref.: #21199]	Country ISO 3 Code	ESP
[Ref.: #21199]	Continent	Europe
[Ref.: #21199]	Geographic location	39.4747°/-0.3203°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21199]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21199]	Marinifilum flexuosum partial 16S rRNA gene, strain M30T	HE613737	1478	ENA	1117708 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinifilum flexuosum DSM 21950	GCA_003610555	scaffold	GenBank	1117708 tax ID	*
[Ref.: #66792]	Marinifilum flexuosum strain DSM 21950	1117708.3	wgs	PATRIC	1117708 tax ID	*
[Ref.: #66792]	Marinifilum flexuosum DSM 21950	2728369260	draft	JGI IMG/M	1117708 tax ID	*

[Ref.: #21199]	GC-content	35.7 mol%	sequence analysis
[Ref.: #21199]	GC-content	32.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinifilum flexuosum DSM 21950 NCBI: GCA_003610555.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinifilum flexuosum DSM 21950 NCBI: GCA_003610555.1
[Ref.: #69480]	motile	no	82.464	no
[Ref.: #69480]	flagellated	no	91.203	no
[Ref.: #69480]	gram-positive	no	97.598	no
[Ref.: #69480]	anaerobic	no	59.626	no
[Ref.: #69480]	aerobic	no	92.471	no
[Ref.: #69480]	halophile	no	57.982	no
[Ref.: #69480]	spore-forming	no	92.831	no
[Ref.: #69480]	glucose-util	yes	88.34	no
[Ref.: #69480]	thermophile	no	98.229	no
[Ref.: #69480]	glucose-ferment	no	63.275	no

Availability in culture collections External links

[Ref.: #21199]

Culture collection no.

DSM 21950, CECT 7448

[Ref.: #88610]

SI-ID 390804

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinifilum breve sp. nov., a marine bacterium isolated from the Yongle Blue Hole in the South China Sea and emended description of the genus Marinifilum.	Fu T, Jia C, Fu L, Zhou S, Yao P, Du R, Sun H, Yang Z, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003027	2018	*
Phylogeny	Marinifilum albidiflavum sp. nov., isolated from coastal sediment.	Xu ZX, Mu X, Zhang HX, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001395	2016	*
Phylogeny	Marinifilum flexuosum sp. nov., a new Bacteroidetes isolated from coastal Mediterranean Sea water and emended description of the genus Marinifilum Na et al., 2009.	Ruvira MA, Lucena T, Pujalte MJ, Arahal DR, Macian MC	Syst Appl Microbiol	10.1016/j.syapm.2012.12.003	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21199

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21950

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88610

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390804.1 )

* These data were automatically processed and therefore are not curated

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Marinifilum flexuosum DSM 21950

Marinifilum flexuosum DSM 21950

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