Name: Mesoaciditoga lauensis cd-1655R
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24785

Type strain:

Species: Mesoaciditoga lauensis

Strain Designation: cd-1655R

Culture col. no.: DSM 25116, OCM 1212

Strain history: <- A.-L. Reysenbach, Dept. Biology, Portland State Univ., USA; cd-1655R <- Y. Liu

NCBI tax ID(s): 1150474 (strain), 1495039 (species)

SI-ID 405873

DSM 25116

Section

Mesoaciditoga lauensis cd-1655R is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from deep-sea hydrothermal vent deposit, 1925 m depth.

Gram-negative
motile
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Mesoaciditogales*
	Family	*Mesoaciditogaceae*
	Genus	*Mesoaciditoga*
	Species	**Mesoaciditoga lauensis**
	Full Scientific Name (LPSN)	Mesoaciditoga lauensis Reysenbach et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31043]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.806

[Ref.: #31043]	Cell length	0.9 µm

[Ref.: #31043]	Cell width	0.45 µm

[Ref.: #31043]	Cell shape	rod-shaped

[Ref.: #31043]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21296]

Culture medium

ACIDULIPROFUNDUM MEDIUM (DSMZ Medium 1083)

[Ref.: #21296]

Culture medium growth

[Ref.: #21296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21296]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21296]	growth	60 °C
[Ref.: #31043]	growth	45-65 °C
[Ref.: #31043]	optimum	58.5 °C

[Ref.: #21296]	Temperature range	thermophilic
[Ref.: #31043]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

	pH	Kind of pH		pH
[Ref.: #31043]			optimum	5.6
[Ref.: #31043]			growth	4.1-6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21296]	Oxygen tolerance	anaerobe
[Ref.: #31043]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #31043]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.841

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31043]		NaCl		growth	01-05	%
[Ref.: #31043]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31043]	fructose ChEBI	+	carbon source
[Ref.: #31043]	glucose ChEBI	+	carbon source
[Ref.: #31043]	maltose ChEBI	+	carbon source
[Ref.: #31043]	sucrose ChEBI	+	carbon source
[Ref.: #31043]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21296]	Sample type/isolated from	deep-sea hydrothermal vent deposit, 1925 m depth
[Ref.: #21296]	Geographic location (country and/or sea, region)	south-western Pacific Ocean, Eastern Lau Spreading Center
[Ref.: #21296]	Country	Tonga
[Ref.: #21296]	Country ISO 3 Code	TON
[Ref.: #21296]	Continent	Australia and Oceania
[Ref.: #21296]	Geographic location	-22.2708°/-176.9030°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ347593 (>99% sequence identity) for Mesoaciditoga lauensis subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	21
Animal Samples	291
Plant Samples	8
Total Samples	378

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21296]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21296]	Mesoaciditoga lauensis DSM 25116 16S ribosomal RNA gene, partial sequence	JQ347593	1462	ENA	1150474 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesoaciditoga lauensis cd-1655R = DSM 25116	GCA_000745455	scaffold	GenBank	1150474 tax ID	*
[Ref.: #66792]	Mesoaciditoga lauensis cd-1655R = DSM 25116	1150474.3	wgs	PATRIC	1150474 tax ID	*
[Ref.: #66792]	Mesoaciditoga lauensis cd-1655R, DSM 25116	2579779163	draft	JGI IMG/M	1150474 tax ID	*

[Ref.: #21296]	GC-content	45 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31043]	GC-content	45 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mesoaciditoga lauensis cd-1655R = DSM 25116 DSM 25116 NCBI: GCA_000745455.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesoaciditoga lauensis cd-1655R = DSM 25116 DSM 25116 NCBI: GCA_000745455.1
[Ref.: #69480]	motile	yes	85.151	no
[Ref.: #69480]	flagellated	no	93.401	no
[Ref.: #69480]	gram-positive	no	95.91	no
[Ref.: #69480]	anaerobic	yes	98.439	yes
[Ref.: #69480]	aerobic	no	98.346	yes
[Ref.: #69480]	halophile	no	89.337	no
[Ref.: #69480]	spore-forming	no	93.006	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	88.701	yes
[Ref.: #69480]	glucose-ferment	no	53.878	no

Availability in culture collections External links

[Ref.: #21296]

Culture collection no.

DSM 25116, OCM 1212

[Ref.: #88609]

SI-ID 405873

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesoaciditoga lauensis gen. nov., sp. nov., a moderately thermoacidophilic member of the order Thermotogales from a deep-sea hydrothermal vent.	Reysenbach AL, Liu Y, Lindgren AR, Wagner ID, Sislak CD, Mets A, Schouten S	Int J Syst Evol Microbiol	10.1099/ijs.0.050518-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21296

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25116

#31043

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27373 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88609

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405873.1 )

#27373

IJSEM 4724 2013 ( DOI 10.1099/ijs.0.050518-0 , PubMed 23959829 )

* These data were automatically processed and therefore are not curated

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Mesoaciditoga lauensis cd-1655R = DSM 25116 DSM 25116

Mesoaciditoga lauensis cd-1655R = DSM 25116 DSM 25116

Change proposal

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