Vallitalea guaymasensis (DSM 24848, JCM 17997, Ra 1766F)

Name: Vallitalea guaymasensis (DSM 24848, JCM 17997, Ra 1766F)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24770

Type strain

Strain Designation Ra 1766F, Ra1766G1

Culture col. no. DSM 24848 JCM 17997 Ra 1766F Ra1766G1

NCBI tax ID(s) 1185412

Special Collections DSMZ JCM Literature strains

History <- M.-L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; Ra1766G1 <- R. Lakhal {2011} M.-L. Fardeau Ra1766G1.

Links

Vallitalea guaymasensis Ra 1766F is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from deep sea sediments, 2002 m depth.

Gram-negative rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397699

JCM 17997,DSM 24848

@ref 20215

Last LPSN update 2026-02-09 11:24:04

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Vallitaleaceae

Genus Vallitalea

Species Vallitalea guaymasensis

Full scientific name Vallitalea guaymasensis Lakhal et al. 2013

Synonyms (1)

Abyssivirga alkaniphila

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30840	negative	6 µm	0.75 µm	rod-shaped
125439	positive					90.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21265	MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040)		Medium recipe at MediaDive	Name: MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040) Composition: Sea Salt 34.9301 g/l Na-DL-lactate 2.49501 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l FeSO4 x 7 H2O 0.000998004 g/l CaCl2 x 2 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l Pyridoxine hydrochloride 9.98004e-05 g/l CuSO4 x 5 H2O 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21265	positive	growth	30	mesophilic
30840	positive	growth	20-40
30840	positive	optimum	32.5	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
30840	positive	optimum	7
30840	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
21265	anaerobe
30840	anaerobe
125439	anaerobe	93.4

Spore formation

30840

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30840	NaCl	positive	growth	0.5-7.5 %
30840	NaCl	positive	optimum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30840	22599 ChEBI	arabinose	+	carbon source
30840	17057 ChEBI	cellobiose	+	carbon source
30840	28260 ChEBI	galactose	+	carbon source
30840	17234 ChEBI	glucose	+	carbon source
30840	17306 ChEBI	maltose	+	carbon source
30840	29864 ChEBI	mannitol	+	carbon source
30840	37684 ChEBI	mannose	+	carbon source
30840	15361 ChEBI	pyruvate	+	carbon source
30840	16634 ChEBI	raffinose	+	carbon source
30840	33942 ChEBI	ribose	+	carbon source
30840	17992 ChEBI	sucrose	+	carbon source
30840	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21265	deep sea sediments, 2002 m depth	Gulf of California, Guaymas Basin	Mexico	MEX	North America	27.0122	-111.415 27.0122/-111.415
67770	Sediment o Guaymas Basin

Taxonmaps

69479

Global distribution of 16S sequence NR_117645 (>99% sequence identity) for Eubacteriales from Microbeatlas

Aquatic Samples	115
Soil Samples	16
Animal Samples	85
Plant Samples
Total Samples	216

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21265	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1814142v1 assembly for Vallitalea guaymasensis Ra1766G1	complete	GCA_018141425	1185412.10	8063526702	1185412	94.87

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21265	Vallitalea guaymasensis strain Ra1766G1 16S ribosomal RNA, partial sequence	NR_117645	1444		1185412
67770	Vallitalea guaymasensis partial 16S rRNA gene, type strain Ra1766G1T	HE805640	1444		1185412

GC content

@ref	GC-content (mol%)	Method
21265	31.2	high performance liquid chromatography (HPLC)
30840	31.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vallitalea guaymasensis Ra1766G1
NCBI: GCA_018141425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	80.20	no
125439	motility	BacteriaNetⓘ	yes	75.00	no
125439	gram_stain	BacteriaNetⓘ	positive	90.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	93.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vallitalea guaymasensis Ra1766G1
NCBI: GCA_018141425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.55	yes
125438	anaerobic	anaerobicⓘ	yes	79.71	no
125438	aerobic	aerobicⓘ	no	90.53	yes
125438	spore-forming	spore-formingⓘ	yes	51.05	yes
125438	thermophilic	thermophileⓘ	no	91.07	yes
125438	flagellated	motile2+ⓘ	yes	75.61	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System.	Schouw A, Vulcano F, Roalkvam I, Hocking WP, Reeves E, Stokke R, Bodtker G, Steen IH.	Microorganisms	10.3390/microorganisms6030063	2018
Phylogeny	Vallitalea okinawensis sp. nov., isolated from Okinawa Trough sediment and emended description of the genus Vallitalea.	Sun YT, Zhou N, Wang BJ, Liu XD, Jiang CY, Ge X, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003158	2018
Phylogeny	Vallitalea guaymasensis gen. nov., sp. nov., isolated from marine sediment.	Lakhal R, Pradel N, Postec A, Hamdi M, Ollivier B, Godfroy A, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijs.0.045708-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21265	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24848
#27170	IJSEM 3019 2013 ( DOI 10.1099/ijs.0.045708-0 , PubMed 23396717 )
#30840	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27170
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vallitalea guaymasensis (DSM 24848, JCM 17997, Ra 1766F)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018141425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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