Name: Anaerococcus pacaensis 9403502
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24764

Type strain:

Species: Anaerococcus pacaensis

Strain Designation: 9403502

Culture col. no.: DSM 26346, CSUR P122

Strain history: <- I. Pagnier, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France; 9403502 <- A. Martinez

NCBI tax ID(s): 1465826 (species)

SI-ID 407409

DSM 26346

Section

Anaerococcus pacaensis 9403502 is an obligate anaerobe, mesophilic human pathogen that was isolated from blood.

human pathogen
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Anaerococcus*
	Species	**Anaerococcus pacaensis**
	Full Scientific Name (LPSN)	Anaerococcus pacaensis Pagnier et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20307]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #20307]

Culture medium growth

[Ref.: #20307]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20307]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20307]			growth	37 °C

[Ref.: #20307]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20307]

Oxygen tolerance

obligate anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	+	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #20307]	12813	-	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	+/-	-	-	-	-	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20307]	Sample type/isolated from	blood
[Ref.: #20307]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #20307]	Country	France
[Ref.: #20307]	Country ISO 3 Code	FRA
[Ref.: #20307]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM587325 (>99% sequence identity) for Anaerococcus from Microbeatlas

Aquatic Samples	32
Soil Samples	25
Animal Samples	809
Plant Samples	4
Total Samples	870

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20307]	Pathogenicity (human)	yes, in single cases
[Ref.: #20307]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20307]	Anaerococcus pacaensis 9403502 16S ribosomal RNA gene, partial sequence	HM587325	1289	ENA	938294 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerococcus pacaensis 9403502	GCA_000308255	contig	GenBank	938294 tax ID	*
[Ref.: #66792]	Anaerococcus pacaensis 9403502	2915063958	draft	JGI IMG/M	938294 tax ID	*

[Ref.: #20307]

GC-content

35.05 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerococcus pacaensis 9403502 9403502 NCBI: GCA_000308255.3
[Ref.: #69480]	motile	no	93.47	no
[Ref.: #69480]	flagellated	no	97.423	no
[Ref.: #69480]	gram-positive	yes	93.615	no
[Ref.: #69480]	anaerobic	yes	98.17	no
[Ref.: #69480]	aerobic	no	96.348	yes
[Ref.: #69480]	halophile	no	62.62	no
[Ref.: #69480]	spore-forming	no	90.532	no
[Ref.: #69480]	glucose-util	yes	85.103	no
[Ref.: #69480]	thermophile	no	95.457	no
[Ref.: #69480]	glucose-ferment	yes	67.427	no

Availability in culture collections External links

[Ref.: #20307]

Culture collection no.

DSM 26346, CSUR P122

[Ref.: #88591]

SI-ID 407409

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium.	Pagnier I, Croce O, Robert C, Raoult D, La Scola B	Stand Genomic Sci	10.4056/sigs.4177252	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20307

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26346

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88591

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407409.1 )

* These data were automatically processed and therefore are not curated

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Anaerococcus pacaensis 9403502 9403502

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