Name: Thiocapsa pendens 1314
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2476

Type strain:

Species: Thiocapsa pendens

Strain Designation: 1314

Culture col. no.: DSM 236

Strain history: <- N. Pfennig, 1314

NCBI tax ID(s): 12934 (species)

SI-ID 47104

DSM 236

Special Collections

DSMZ

Other strains from Thiocapsa pendens

Section

Thiocapsa pendens 1314 is an anaerobe bacterium that was isolated from sewage pond.

anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiocapsa*
	Species	**Thiocapsa pendens**
	Full Scientific Name (LPSN)	Thiocapsa pendens (Molisch 1906) Guyoneaud et al. 1998

	Synonym	"Rhodothece* pendens"*
	Synonym	Amoebobacter pendens

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #61]	Sample type/isolated from	sewage pond
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Wastewater
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ002797 (>99% sequence identity) for Thiocapsa pendens from Microbeatlas

Aquatic Samples	3
Soil Samples
Animal Samples	3
Plant Samples
Total Samples	6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #61]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thiocapsa pendens partial 16S rRNA gene, type strain DSM 236	AJ002797	1452	GenBank ENA	12934 tax ID	*

[Ref.: #61]

GC-content

65.3 mol%

Availability in culture collections External links

[Ref.: #61]

Culture collection no.

DSM 236

[Ref.: #72018]

SI-ID 47104

References

#61	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 236

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72018

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47104.1 )

* These data were automatically processed and therefore are not curated

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